RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 MRGBPQ9NV56 204 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 EURLQ9NYK6 297 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 PPP1R9AQ9ULJ8 1098 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 TMA7Q9Y2S6 64 aaKnown RBP6.3□□□□□ -1.4
SCN1A-216ENST00000637968 AKR1B10O60218 316 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 NQO1P15559 274 aaKnown RBP6.3□□□□□ -1.4
SCN1A-216ENST00000637968 ZFYVE27Q5T4F4 411 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 ERICH1Q86X53 443 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 RSPH1Q8WYR4 309 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 PAGR1Q9BTK6 254 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 BTBD7Q9P203 1132 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 THEGQ9P2T0 379 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 SLC4A7Q9Y6M7 1214 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 COMMD3-BMI1R4GMX3 469 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 EHBP1L1Q8N3D4 1523 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 AATKQ6ZMQ8 1374 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 GFPT2O94808 682 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 IDEP14735 1019 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 NFKBIAP25963 317 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 RASSF2P50749 326 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 ESCO1Q5FWF5 840 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 C1orf141Q5JVX7 400 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 CCDC122Q5T0U0 273 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 TMEM53Q6P2H8 277 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 CYP26C1Q6V0L0 522 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 NOA1Q8NC60 698 aaKnown RBP6.3□□□□□ -1.4
SCN1A-216ENST00000637968 PANX2Q96RD6 677 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 BPIFA3Q9BQP9 254 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 CNOT10Q9H9A5 744 aaKnown RBP6.3□□□□□ -1.4
SCN1A-216ENST00000637968 PALMDQ9NP74 551 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 SLC5A4Q9NY91 659 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 ZNF330Q9Y3S2 320 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-216ENST00000637968 PLXNC1O60486 1568 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 A0A1B0GVG6 124 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 TMEM247A6NEH6 219 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 A6NHS1 94 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 MRPS25P82663 173 aaKnown RBP6.3□□□□□ -1.4
SCN1A-216ENST00000637968 ATP8B2P98198 1209 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 PPARDQ03181 441 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 SPA17Q15506 151 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 HSP90AA4PQ58FG1 418 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 VSIG1Q86XK7 387 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 FNBP4Q8N3X1 1017 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-216ENST00000637968 FAM133AQ8N9E0 248 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 RUBCNQ92622 972 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 CCDC51Q96ER9 411 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 SH3GL2Q99962 352 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 ECT2Q9H8V3 914 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 ZNF510Q9Y2H8 683 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 N6AMT1Q9Y5N5 214 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 DISP3Q9P2K9 1392 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 ASXL2Q76L83 1435 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 ALDH1L1O75891 902 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 SUN1O94901 812 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 APOEP02649 317 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 NAT2P11245 290 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 KIF11P52732 1056 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 SF3A3Q12874 501 aaKnown RBP eCLIP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 TMEM259Q4ZIN3 620 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 SLC4A10Q6U841 1118 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 CAPN12Q6ZSI9 719 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 LENG1Q96BZ8 264 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 ZNF570Q96NI8 536 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 SCHIP1Q9P0W5 487 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 KDRP35968 1356 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 TMEM110-MUSTN1A8MSY1 372 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 E7ENQ6 273 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 MAP3K7O43318 606 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 SLC26A4O43511 780 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 ACTN4O43707 911 aaKnown RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 HOXD12P35452 270 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 CACNA2D1P54289 1103 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 OXCT1P55809 520 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 LARP1Q6PKG0 1096 aaKnown RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 ANKRD44Q8N8A2 993 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 KIFC2Q96AC6 838 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 DHTKD1Q96HY7 919 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 STMN4Q9H169 189 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 BHMT2Q9H2M3 363 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 TRPV5Q9NQA5 729 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 SEPT10Q9P0V9 454 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 SSX2IPQ9Y2D8 614 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 WDR62O43379 1518 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 FAM135BQ49AJ0 1406 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 PPIP5K1Q6PFW1 1433 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 SPDYE5A6NIY4 337 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 CTNND1O60716 968 aaKnown RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 TOM1O60784 492 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 LGR5O75473 907 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 S100BP04271 92 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 HSPA8P11142 646 aaKnown RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 EPB41P11171 864 aaKnown RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 CYLC1P35663 651 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 TRPC1P48995 793 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 SGSM1Q2NKQ1 1148 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 DPCR1Q3MIW9 517 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 LACTB2Q53H82 288 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 GJC2Q5T442 439 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-216ENST00000637968 DPY19L2Q6NUT2 758 aa6.29□□□□□ -1.4
SCN1A-216ENST00000637968 TTC30AQ86WT1 665 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms