RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 MAMDC4Q6UXC1 1216 aa22.62■■□□□ 1.21
CLN3-260ENST00000637578 ZNF467Q7Z7K2 595 aaPredicted RBP22.62■■□□□ 1.21
CLN3-260ENST00000637578 IQCA1Q86XH1 822 aa22.62■■□□□ 1.21
CLN3-260ENST00000637578 DDX11Q96FC9 970 aa22.62■■□□□ 1.21
CLN3-260ENST00000637578 ZKSCAN3Q9BRR0 538 aa22.62■■□□□ 1.21
CLN3-260ENST00000637578 CNNM2Q9H8M5 875 aa22.62■■□□□ 1.21
CLN3-260ENST00000637578 MTMR7Q9Y216 660 aa22.62■■□□□ 1.21
CLN3-260ENST00000637578 PFASO15067 1338 aa22.61■■□□□ 1.21
CLN3-260ENST00000637578 SLC4A3P48751 1232 aa22.61■■□□□ 1.21
CLN3-260ENST00000637578 ZSCAN10Q96SZ4 725 aaPredicted RBP22.61■■□□□ 1.21
CLN3-260ENST00000637578 RANBP17Q9H2T7 1088 aaKnown RBP22.61■■□□□ 1.21
CLN3-260ENST00000637578 SLC16A2P36021 539 aa22.6■■□□□ 1.21
CLN3-260ENST00000637578 ZNF543Q08ER8 600 aa22.6■■□□□ 1.21
CLN3-260ENST00000637578 ANKRD35Q8N283 1001 aa22.6■■□□□ 1.21
CLN3-260ENST00000637578 FGD4Q96M96 766 aa22.6■■□□□ 1.21
CLN3-260ENST00000637578 ACAD9Q9H845 621 aa22.6■■□□□ 1.21
CLN3-260ENST00000637578 NR2E3Q9Y5X4 410 aa22.6■■□□□ 1.21
CLN3-260ENST00000637578 SYNGAP1Q96PV0 1343 aa22.6■■□□□ 1.21
CLN3-260ENST00000637578 SNAP25P60880 206 aa22.59■■□□□ 1.21
CLN3-260ENST00000637578 SYDE2Q5VT97 1194 aa22.59■■□□□ 1.21
CLN3-260ENST00000637578 ENAHQ8N8S7 591 aaPredicted RBP22.59■■□□□ 1.21
CLN3-260ENST00000637578 HOMER2Q9NSB8 354 aa22.59■■□□□ 1.21
CLN3-260ENST00000637578 FRMPD2Q68DX3 1309 aaPredicted RBP22.59■■□□□ 1.21
CLN3-260ENST00000637578 PLXNA1Q9UIW2 1896 aa22.59■■□□□ 1.21
CLN3-260ENST00000637578 EVI5O60447 810 aa22.59■■□□□ 1.21
CLN3-260ENST00000637578 SNAI1O95863 264 aaPredicted RBP22.59■■□□□ 1.21
CLN3-260ENST00000637578 ICAM1P05362 532 aa22.59■■□□□ 1.21
CLN3-260ENST00000637578 CYP21A2P08686 494 aa22.59■■□□□ 1.21
CLN3-260ENST00000637578 ZNF865P0CJ78 1059 aaPredicted RBP22.59■■□□□ 1.21
CLN3-260ENST00000637578 CCDC174Q6PII3 467 aa22.59■■□□□ 1.21
CLN3-260ENST00000637578 MAP4K1Q92918 833 aa22.59■■□□□ 1.21
CLN3-260ENST00000637578 TRERF1Q96PN7 1200 aa22.59■■□□□ 1.21
CLN3-260ENST00000637578 GPCPD1Q9NPB8 672 aa22.59■■□□□ 1.21
CLN3-260ENST00000637578 RNF146Q9NTX7 359 aa22.59■■□□□ 1.21
CLN3-260ENST00000637578 U3KPZ7 1027 aaPredicted RBP22.59■■□□□ 1.21
CLN3-260ENST00000637578 FRMPD3Q5JV73 1810 aa22.58■■□□□ 1.21
CLN3-260ENST00000637578 CEP290O15078 2479 aa22.58■■□□□ 1.21
CLN3-260ENST00000637578 TAL1P17542 331 aaPredicted RBP22.58■■□□□ 1.2
CLN3-260ENST00000637578 BMP2KLQ5H9B9 411 aa22.58■■□□□ 1.2
CLN3-260ENST00000637578 GPATCH4Q5T3I0 446 aaKnown RBP22.58■■□□□ 1.2
CLN3-260ENST00000637578 FAM133AQ8N9E0 248 aa22.58■■□□□ 1.2
CLN3-260ENST00000637578 PNMA1Q8ND90 353 aa22.58■■□□□ 1.2
CLN3-260ENST00000637578 A1CFQ9NQ94 594 aaKnown RBP22.58■■□□□ 1.2
CLN3-260ENST00000637578 DNM1LO00429 736 aa22.57■■□□□ 1.2
CLN3-260ENST00000637578 ALAS1P13196 640 aa22.57■■□□□ 1.2
CLN3-260ENST00000637578 ARRDC4Q8NCT1 418 aa22.57■■□□□ 1.2
CLN3-260ENST00000637578 TNKSO95271 1327 aa22.57■■□□□ 1.2
CLN3-260ENST00000637578 MUM1L1Q5H9M0 696 aa22.56■■□□□ 1.2
CLN3-260ENST00000637578 CCPG1Q9ULG6 757 aa22.56■■□□□ 1.2
CLN3-260ENST00000637578 CNPY2Q9Y2B0 182 aa22.56■■□□□ 1.2
CLN3-260ENST00000637578 ALPK3Q96L96 1907 aa22.56■■□□□ 1.2
CLN3-260ENST00000637578 CNTN2Q02246 1040 aa22.55■■□□□ 1.2
CLN3-260ENST00000637578 SEC23AQ15436 765 aa22.55■■□□□ 1.2
CLN3-260ENST00000637578 KAT14Q9H8E8 782 aa22.55■■□□□ 1.2
CLN3-260ENST00000637578 ANO1Q5XXA6 986 aa22.55■■□□□ 1.2
CLN3-260ENST00000637578 CYB5R4Q7L1T6 521 aa22.55■■□□□ 1.2
CLN3-260ENST00000637578 UBAC1Q9BSL1 405 aa22.55■■□□□ 1.2
CLN3-260ENST00000637578 CYP39A1Q9NYL5 469 aa22.55■■□□□ 1.2
CLN3-260ENST00000637578 PNMA2Q9UL42 364 aa22.55■■□□□ 1.2
CLN3-260ENST00000637578 COLQQ9Y215 455 aaPredicted RBP22.55■■□□□ 1.2
CLN3-260ENST00000637578 TAF6LQ9Y6J9 622 aa22.55■■□□□ 1.2
CLN3-260ENST00000637578 POTEB2H3BUK9 544 aa22.54■■□□□ 1.2
CLN3-260ENST00000637578 SMCHD1A6NHR9 2005 aa22.53■■□□□ 1.2
CLN3-260ENST00000637578 SOWAHBA6NEL2 793 aa22.53■■□□□ 1.2
CLN3-260ENST00000637578 GOLGA8HP0CJ92 632 aa22.53■■□□□ 1.2
CLN3-260ENST00000637578 AKR1A1P14550 325 aa22.53■■□□□ 1.2
CLN3-260ENST00000637578 TRDNQ13061 729 aa22.53■■□□□ 1.2
CLN3-260ENST00000637578 HABP4Q5JVS0 413 aaKnown RBP22.53■■□□□ 1.2
CLN3-260ENST00000637578 GJC2Q5T442 439 aaPredicted RBP22.53■■□□□ 1.2
CLN3-260ENST00000637578 SENP6Q9GZR1 1112 aaPredicted RBP22.53■■□□□ 1.2
CLN3-260ENST00000637578 PRO3102Q9H379 93 aa22.53■■□□□ 1.2
CLN3-260ENST00000637578 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.53■■□□□ 1.2
CLN3-260ENST00000637578 WDR19Q8NEZ3 1342 aa22.53■■□□□ 1.2
CLN3-260ENST00000637578 E7EWF7 191 aa22.52■■□□□ 1.2
CLN3-260ENST00000637578 RARBP10826 455 aa22.52■■□□□ 1.2
CLN3-260ENST00000637578 LRRC41Q15345 812 aa22.52■■□□□ 1.2
CLN3-260ENST00000637578 LRRC26Q2I0M4 334 aa22.52■■□□□ 1.2
CLN3-260ENST00000637578 ASPRV1Q53RT3 343 aa22.52■■□□□ 1.2
CLN3-260ENST00000637578 ARMCX2Q7L311 632 aa22.52■■□□□ 1.2
CLN3-260ENST00000637578 ESYT1Q9BSJ8 1104 aa22.52■■□□□ 1.2
CLN3-260ENST00000637578 KATNBL1Q9H079 304 aa22.52■■□□□ 1.2
CLN3-260ENST00000637578 LSG1Q9H089 658 aaKnown RBP22.52■■□□□ 1.2
CLN3-260ENST00000637578 ABHD16BQ9H3Z7 469 aa22.52■■□□□ 1.2
CLN3-260ENST00000637578 ACVR2BQ13705 512 aa22.51■■□□□ 1.19
CLN3-260ENST00000637578 IFIT1BQ5T764 474 aaKnown RBP22.51■■□□□ 1.19
CLN3-260ENST00000637578 STOX1Q6ZVD7 989 aa22.51■■□□□ 1.19
CLN3-260ENST00000637578 CCDC144CPQ8IYA2 1237 aa22.51■■□□□ 1.19
CLN3-260ENST00000637578 CLEC4DQ8WXI8 215 aa22.51■■□□□ 1.19
CLN3-260ENST00000637578 FAM184BQ9ULE4 1060 aa22.51■■□□□ 1.19
CLN3-260ENST00000637578 RBM8AQ9Y5S9 174 aaKnown RBP22.51■■□□□ 1.19
CLN3-260ENST00000637578 ASTN1O14525 1302 aa22.51■■□□□ 1.19
CLN3-260ENST00000637578 C7orf61Q8IZ16 206 aa22.5■■□□□ 1.19
CLN3-260ENST00000637578 NCOA7Q8NI08 942 aa22.5■■□□□ 1.19
CLN3-260ENST00000637578 UBA5Q9GZZ9 404 aa22.5■■□□□ 1.19
CLN3-260ENST00000637578 XPNPEP3Q9NQH7 507 aa22.5■■□□□ 1.19
CLN3-260ENST00000637578 KBTBD13C9JR72 458 aa22.5■■□□□ 1.19
CLN3-260ENST00000637578 KIAA1211Q6ZU35 1233 aa22.5■■□□□ 1.19
CLN3-260ENST00000637578 CPVLQ9H3G5 476 aa22.5■■□□□ 1.19
CLN3-260ENST00000637578 ASB14A6NK59 587 aa22.49■■□□□ 1.19
CLN3-260ENST00000637578 NFIBO00712 420 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms