RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 ARIH1Q9Y4X5 557 aaPredicted RBP13.73□□□□□ -0.21
CLN3-257ENST00000637110 GREB1LQ9C091 1923 aaPredicted RBP13.72□□□□□ -0.21
CLN3-257ENST00000637110 BDP1A6H8Y1 2624 aa13.72□□□□□ -0.21
CLN3-257ENST00000637110 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.72□□□□□ -0.21
CLN3-257ENST00000637110 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.72□□□□□ -0.21
CLN3-257ENST00000637110 ORC4O43929 436 aa13.72□□□□□ -0.21
CLN3-257ENST00000637110 MCCP23508 829 aa13.72□□□□□ -0.21
CLN3-257ENST00000637110 SLC1A4P43007 532 aa13.72□□□□□ -0.21
CLN3-257ENST00000637110 KCTD2Q14681 263 aa13.72□□□□□ -0.21
CLN3-257ENST00000637110 SNX17Q15036 470 aa13.72□□□□□ -0.21
CLN3-257ENST00000637110 NPLOC4Q8TAT6 608 aa13.72□□□□□ -0.21
CLN3-257ENST00000637110 RNF41Q9H4P4 317 aaPredicted RBP13.72□□□□□ -0.21
CLN3-257ENST00000637110 ZNF576Q9H609 170 aa13.72□□□□□ -0.21
CLN3-257ENST00000637110 SYNPO2Q9UMS6 1093 aa13.72□□□□□ -0.21
CLN3-257ENST00000637110 MYO9BQ13459 2157 aa13.72□□□□□ -0.21
CLN3-257ENST00000637110 PLIN4Q96Q06 1357 aa13.71□□□□□ -0.21
CLN3-257ENST00000637110 TMEM232C9JQI7 657 aa13.71□□□□□ -0.21
CLN3-257ENST00000637110 COPB2P35606 906 aa13.71□□□□□ -0.21
CLN3-257ENST00000637110 CCDC96Q2M329 555 aa13.71□□□□□ -0.21
CLN3-257ENST00000637110 AKNAD1Q5T1N1 836 aa13.71□□□□□ -0.21
CLN3-257ENST00000637110 C1orf53Q5VUE5 145 aa13.71□□□□□ -0.21
CLN3-257ENST00000637110 SNRNP48Q6IEG0 339 aaKnown RBP13.71□□□□□ -0.21
CLN3-257ENST00000637110 RIOX2Q8IUF8 465 aa13.71□□□□□ -0.21
CLN3-257ENST00000637110 FLRT1Q9NZU1 646 aa13.71□□□□□ -0.21
CLN3-257ENST00000637110 ADAMTS5Q9UNA0 930 aa13.71□□□□□ -0.21
CLN3-257ENST00000637110 HCN4Q9Y3Q4 1203 aa13.71□□□□□ -0.21
CLN3-257ENST00000637110 TACC3Q9Y6A5 838 aa13.71□□□□□ -0.21
CLN3-257ENST00000637110 ZMYM6O95789 1325 aa13.7□□□□□ -0.22
CLN3-257ENST00000637110 TRIM43BA6NCK2 446 aa13.7□□□□□ -0.22
CLN3-257ENST00000637110 MYCNP04198 464 aaPredicted RBP13.7□□□□□ -0.22
CLN3-257ENST00000637110 HOXC6P09630 235 aa13.7□□□□□ -0.22
CLN3-257ENST00000637110 CYP2C19P33261 490 aa13.7□□□□□ -0.22
CLN3-257ENST00000637110 STAT2P52630 851 aa13.7□□□□□ -0.22
CLN3-257ENST00000637110 CHURC1Q8WUH1 139 aa13.7□□□□□ -0.22
CLN3-257ENST00000637110 RUFY2Q8WXA3 655 aa13.7□□□□□ -0.22
CLN3-257ENST00000637110 PPM1EQ8WY54 764 aa13.7□□□□□ -0.22
CLN3-257ENST00000637110 TRIM43Q96BQ3 446 aaPredicted RBP13.7□□□□□ -0.22
CLN3-257ENST00000637110 TIFAQ96CG3 184 aa13.7□□□□□ -0.22
CLN3-257ENST00000637110 DDX11Q96FC9 970 aa13.7□□□□□ -0.22
CLN3-257ENST00000637110 TEX13BQ9BXU2 312 aa13.7□□□□□ -0.22
CLN3-257ENST00000637110 RAVER2Q9HCJ3 691 aaKnown RBP13.7□□□□□ -0.22
CLN3-257ENST00000637110 IL17RBQ9NRM6 502 aa13.7□□□□□ -0.22
CLN3-257ENST00000637110 CTNNA3Q9UI47 895 aa13.7□□□□□ -0.22
CLN3-257ENST00000637110 SYNGAP1Q96PV0 1343 aa13.69□□□□□ -0.22
CLN3-257ENST00000637110 COBLO75128 1261 aa13.69□□□□□ -0.22
CLN3-257ENST00000637110 PGK2P07205 417 aa13.69□□□□□ -0.22
CLN3-257ENST00000637110 PCP11498 1178 aaKnown RBP13.69□□□□□ -0.22
CLN3-257ENST00000637110 GSPT1P15170 499 aaKnown RBP13.69□□□□□ -0.22
CLN3-257ENST00000637110 FPGSQ05932 587 aa13.69□□□□□ -0.22
CLN3-257ENST00000637110 IMMTQ16891 758 aaKnown RBP13.69□□□□□ -0.22
CLN3-257ENST00000637110 KCTD1Q719H9 257 aa13.69□□□□□ -0.22
CLN3-257ENST00000637110 SH3RF1Q7Z6J0 888 aa13.69□□□□□ -0.22
CLN3-257ENST00000637110 FAM160B2Q86V87 743 aa13.69□□□□□ -0.22
CLN3-257ENST00000637110 TBC1D10CQ8IV04 446 aa13.69□□□□□ -0.22
CLN3-257ENST00000637110 ABRAQ8N0Z2 381 aa13.69□□□□□ -0.22
CLN3-257ENST00000637110 STAG1Q8WVM7 1258 aa13.69□□□□□ -0.22
CLN3-257ENST00000637110 ESR2Q92731 530 aa13.69□□□□□ -0.22
CLN3-257ENST00000637110 GMCL1Q96IK5 515 aa13.69□□□□□ -0.22
CLN3-257ENST00000637110 ZNF214Q9UL59 606 aaPredicted RBP13.69□□□□□ -0.22
CLN3-257ENST00000637110 COL11A1P12107 1806 aaPredicted RBP13.69□□□□□ -0.22
CLN3-257ENST00000637110 A0A0G2JMZ2 1700 aa13.68□□□□□ -0.22
CLN3-257ENST00000637110 CLTBP09497 229 aa13.68□□□□□ -0.22
CLN3-257ENST00000637110 FGRP09769 529 aa13.68□□□□□ -0.22
CLN3-257ENST00000637110 TOP1P11387 765 aaKnown RBP13.68□□□□□ -0.22
CLN3-257ENST00000637110 CYBAP13498 195 aa13.68□□□□□ -0.22
CLN3-257ENST00000637110 RAG1P15918 1043 aa13.68□□□□□ -0.22
CLN3-257ENST00000637110 OLFML2BQ68BL8 750 aa13.68□□□□□ -0.22
CLN3-257ENST00000637110 RCSD1Q6JBY9 416 aa13.68□□□□□ -0.22
CLN3-257ENST00000637110 CCDC174Q6PII3 467 aa13.68□□□□□ -0.22
CLN3-257ENST00000637110 REPS2Q8NFH8 660 aa13.68□□□□□ -0.22
CLN3-257ENST00000637110 ZKSCAN3Q9BRR0 538 aa13.68□□□□□ -0.22
CLN3-257ENST00000637110 DSCC1Q9BVC3 393 aa13.68□□□□□ -0.22
CLN3-257ENST00000637110 TSPYL2Q9H2G4 693 aaPredicted RBP13.68□□□□□ -0.22
CLN3-257ENST00000637110 HOMER2Q9NSB8 354 aa13.68□□□□□ -0.22
CLN3-257ENST00000637110 PARP14Q460N5 1801 aa13.68□□□□□ -0.22
CLN3-257ENST00000637110 SEPT4O43236 478 aa13.67□□□□□ -0.22
CLN3-257ENST00000637110 FDX1P10109 184 aa13.67□□□□□ -0.22
CLN3-257ENST00000637110 ADCYAP1R1P41586 468 aa13.67□□□□□ -0.22
CLN3-257ENST00000637110 TLE2Q04725 743 aa13.67□□□□□ -0.22
CLN3-257ENST00000637110 ANKRD35Q8N283 1001 aa13.67□□□□□ -0.22
CLN3-257ENST00000637110 TRPV1Q8NER1 839 aa13.67□□□□□ -0.22
CLN3-257ENST00000637110 DCAF4Q8WV16 495 aa13.67□□□□□ -0.22
CLN3-257ENST00000637110 MAML3Q96JK9 1138 aa13.67□□□□□ -0.22
CLN3-257ENST00000637110 TMEM47Q9BQJ4 181 aa13.67□□□□□ -0.22
CLN3-257ENST00000637110 SLC38A10Q9HBR0 1119 aa13.67□□□□□ -0.22
CLN3-257ENST00000637110 TCP11L1Q9NUJ3 509 aa13.67□□□□□ -0.22
CLN3-257ENST00000637110 RIPK3Q9Y572 518 aa13.67□□□□□ -0.22
CLN3-257ENST00000637110 FRMPD2Q68DX3 1309 aaPredicted RBP13.66□□□□□ -0.22
CLN3-257ENST00000637110 KDM4AO75164 1064 aa13.66□□□□□ -0.22
CLN3-257ENST00000637110 OAZ1P54368 228 aa13.66□□□□□ -0.22
CLN3-257ENST00000637110 SNAP25P60880 206 aa13.66□□□□□ -0.22
CLN3-257ENST00000637110 PRAMEF19Q5SWL8 479 aa13.66□□□□□ -0.22
CLN3-257ENST00000637110 IQCA1Q86XH1 822 aa13.66□□□□□ -0.22
CLN3-257ENST00000637110 FERMT2Q96AC1 680 aa13.66□□□□□ -0.22
CLN3-257ENST00000637110 TTC14Q96N46 770 aa13.66□□□□□ -0.22
CLN3-257ENST00000637110 GPCPD1Q9NPB8 672 aa13.66□□□□□ -0.22
CLN3-257ENST00000637110 FBXO40Q9UH90 709 aa13.66□□□□□ -0.22
CLN3-257ENST00000637110 NEDD4P46934 1319 aa13.65□□□□□ -0.22
CLN3-257ENST00000637110 RAD50Q92878 1312 aa13.65□□□□□ -0.22
CLN3-257ENST00000637110 ZNF236Q9UL36 1845 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms