RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 ANKRD13BQ86YJ7 626 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 LMNTD2Q8IXW0 634 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 IFNL3Q8IZI9 196 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 NDUFAF2Q8N183 169 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 CHCHD4Q8N4Q1 142 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 HELQQ8TDG4 1101 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 FRS2Q8WU20 508 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 E2F7Q96AV8 911 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 ATP13A1Q9HD20 1204 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 PTPRHQ9HD43 1115 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 SEMA3GQ9NS98 782 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 RAI14Q9P0K7 980 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 PARP2Q9UGN5 583 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 SMC3Q9UQE7 1217 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 RABGAP1Q9Y3P9 1069 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 ADAMTS20P59510 1910 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 KAT6BQ8WYB5 2073 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 A0A1W2PRQ8 180 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 PABPN1LA6NDY0 278 aaKnown RBP3.63□□□□□ -1.83
VIM-210ENST00000637053 PRSS47A8MTI9 375 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 PSPNO60542 156 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 ICMTO60725 284 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 TRIM13O60858 407 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 CDC45O75419 566 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 RPN1P04843 607 aaKnown RBP3.63□□□□□ -1.83
VIM-210ENST00000637053 SLFN14P0C7P3 912 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 ITPKAP23677 461 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 ANP32AP39687 249 aaKnown RBP3.63□□□□□ -1.83
VIM-210ENST00000637053 GEMIN4P57678 1058 aaKnown RBP3.63□□□□□ -1.83
VIM-210ENST00000637053 EXOSC10Q01780 885 aaKnown RBP3.63□□□□□ -1.83
VIM-210ENST00000637053 AP3B2Q13367 1082 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 NFIXQ14938 502 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 ALFQ53S48 1182 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 BRDTQ58F21 947 aaPredicted RBP3.63□□□□□ -1.83
VIM-210ENST00000637053 UBE3DQ7Z6J8 389 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 PRRT2Q7Z6L0 340 aaPredicted RBP3.63□□□□□ -1.83
VIM-210ENST00000637053 RELL1Q8IUW5 271 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 GLYCTKQ8IVS8 523 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 CDHR1Q96JP9 859 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 DNAJC25Q9H1X3 360 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 MRS2Q9HD23 443 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 ANO2Q9NQ90 1003 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 FANCLQ9NW38 375 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 EVLQ9UI08 416 aaPredicted RBP3.63□□□□□ -1.83
VIM-210ENST00000637053 FBXO2Q9UK22 296 aaPredicted RBP3.63□□□□□ -1.83
VIM-210ENST00000637053 PPP2R3BQ9Y5P8 575 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 MRVI1Q9Y6F6 885 aa3.63□□□□□ -1.83
VIM-210ENST00000637053 PRRT4C9JH25 899 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 VAMP4O75379 141 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 RAPGEF3O95398 923 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 EOMESO95936 686 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 ATF3P18847 181 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 TNNT2P45379 298 aaPredicted RBP3.62□□□□□ -1.83
VIM-210ENST00000637053 MASP1P48740 699 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 CDKN1CP49918 316 aaPredicted RBP3.62□□□□□ -1.83
VIM-210ENST00000637053 ZNF157P51786 506 aaPredicted RBP3.62□□□□□ -1.83
VIM-210ENST00000637053 CLCN7P51798 805 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 ERVFC1P60507 584 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 GPSM2P81274 684 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 MTMR3Q13615 1198 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 HLTFQ14527 1009 aaKnown RBP eCLIP3.62□□□□□ -1.83
VIM-210ENST00000637053 SEPT2Q15019 361 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 LRRC41Q15345 812 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 TOMM20Q15388 145 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 SLC4A8Q2Y0W8 1093 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 ZC3H12AQ5D1E8 599 aaKnown RBP3.62□□□□□ -1.83
VIM-210ENST00000637053 ARSHQ5FYA8 562 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 ARMC3Q5W041 872 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 ERAP2Q6P179 960 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 UBE2Q1Q7Z7E8 422 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 PHF6Q8IWS0 365 aaKnown RBP eCLIP3.62□□□□□ -1.83
VIM-210ENST00000637053 GALNT12Q8IXK2 581 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 CKAP2LQ8IYA6 745 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 MARCH10Q8NA82 808 aaPredicted RBP3.62□□□□□ -1.83
VIM-210ENST00000637053 DDX54Q8TDD1 881 aaKnown RBP3.62□□□□□ -1.83
VIM-210ENST00000637053 HSPA12BQ96MM6 686 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.62□□□□□ -1.83
VIM-210ENST00000637053 TMEM51Q9NW97 253 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 RTEL1Q9NZ71 1219 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 GTF2IRD1Q9UHL9 959 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 TAGLN3Q9UI15 199 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 TMCC3Q9ULS5 477 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 CNTNAP4Q9C0A0 1308 aa3.62□□□□□ -1.83
VIM-210ENST00000637053 GOLGA6L6A8MZA4 724 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 PRR33A8MZF0 331 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 IPO8O15397 1037 aaKnown RBP3.61□□□□□ -1.83
VIM-210ENST00000637053 SORBS3O60504 671 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 SCGB1D2O95969 90 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 SRFP11831 508 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 KCNA2P16389 499 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 EPHB1P54762 984 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 EIF5P55010 431 aaKnown RBP3.61□□□□□ -1.83
VIM-210ENST00000637053 ZBED6P86452 979 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 FAAP100Q0VG06 881 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 MORC3Q14149 939 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 TAF11Q15544 211 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 USPL1Q5W0Q7 1092 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 IQCEQ6IPM2 695 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 KSR2Q6VAB6 950 aa3.61□□□□□ -1.83
VIM-210ENST00000637053 TMC4Q7Z404 712 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms