RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 PDXDC2PQ6P474 469 aa17.74■□□□□ 0.43
CLN3-251ENST00000636853 TMC6Q7Z403 805 aa17.74■□□□□ 0.43
CLN3-251ENST00000636853 ADGRF4Q8IZF3 695 aa17.74■□□□□ 0.43
CLN3-251ENST00000636853 PRMT6Q96LA8 375 aaPredicted RBP17.74■□□□□ 0.43
CLN3-251ENST00000636853 BLZF1Q9H2G9 400 aa17.74■□□□□ 0.43
CLN3-251ENST00000636853 JMJD4Q9H9V9 463 aa17.74■□□□□ 0.43
CLN3-251ENST00000636853 DACH1Q9UI36 760 aa17.74■□□□□ 0.43
CLN3-251ENST00000636853 RAD21O60216 631 aa17.74■□□□□ 0.43
CLN3-251ENST00000636853 CCNT1O60563 726 aaKnown RBP17.74■□□□□ 0.43
CLN3-251ENST00000636853 KARSQ15046 597 aaKnown RBP17.74■□□□□ 0.43
CLN3-251ENST00000636853 MED15Q96RN5 788 aa17.74■□□□□ 0.43
CLN3-251ENST00000636853 MTRQ99707 1265 aa17.74■□□□□ 0.43
CLN3-251ENST00000636853 UBASH3AP57075 661 aa17.73■□□□□ 0.43
CLN3-251ENST00000636853 REXO1Q8N1G1 1221 aaKnown RBP17.73■□□□□ 0.43
CLN3-251ENST00000636853 TTLL6Q8N841 843 aa17.73■□□□□ 0.43
CLN3-251ENST00000636853 TBCKQ8TEA7 893 aa17.73■□□□□ 0.43
CLN3-251ENST00000636853 TRIM34Q9BYJ4 488 aa17.73■□□□□ 0.43
CLN3-251ENST00000636853 EEF2P13639 858 aaKnown RBP17.73■□□□□ 0.43
CLN3-251ENST00000636853 SMYD4Q8IYR2 804 aaPredicted RBP17.73■□□□□ 0.43
CLN3-251ENST00000636853 NFE2L3Q9Y4A8 694 aa17.73■□□□□ 0.43
CLN3-251ENST00000636853 ESYT2A0FGR8 921 aa17.72■□□□□ 0.43
CLN3-251ENST00000636853 PPP1R11O60927 126 aaPredicted RBP17.72■□□□□ 0.43
CLN3-251ENST00000636853 CD44P16070 742 aaKnown RBP17.72■□□□□ 0.43
CLN3-251ENST00000636853 TXLNAP40222 546 aa17.72■□□□□ 0.43
CLN3-251ENST00000636853 CUL4BQ13620 913 aa17.72■□□□□ 0.43
CLN3-251ENST00000636853 C10orf71Q711Q0 1435 aa17.72■□□□□ 0.43
CLN3-251ENST00000636853 NEK8Q86SG6 692 aa17.72■□□□□ 0.43
CLN3-251ENST00000636853 USP17L10C9JJH3 530 aa17.72■□□□□ 0.43
CLN3-251ENST00000636853 SF3B2Q13435 895 aaKnown RBP17.72■□□□□ 0.43
CLN3-251ENST00000636853 SEPT2Q15019 361 aa17.72■□□□□ 0.43
CLN3-251ENST00000636853 KLHL10Q6JEL2 608 aa17.72■□□□□ 0.43
CLN3-251ENST00000636853 ENOX1Q8TC92 643 aaKnown RBP17.72■□□□□ 0.43
CLN3-251ENST00000636853 GSDMAQ96QA5 445 aa17.72■□□□□ 0.43
CLN3-251ENST00000636853 IMPACTQ9P2X3 320 aa17.72■□□□□ 0.43
CLN3-251ENST00000636853 PNMA6FA0A0J9YX94 578 aa17.71■□□□□ 0.43
CLN3-251ENST00000636853 hCG_1984214I3L0E3 225 aa17.71■□□□□ 0.43
CLN3-251ENST00000636853 RAD17O75943 681 aa17.71■□□□□ 0.43
CLN3-251ENST00000636853 GDF11O95390 407 aa17.71■□□□□ 0.43
CLN3-251ENST00000636853 DPEP1P16444 411 aa17.71■□□□□ 0.43
CLN3-251ENST00000636853 STAT6P42226 847 aa17.71■□□□□ 0.43
CLN3-251ENST00000636853 BAG6P46379 1132 aa17.71■□□□□ 0.43
CLN3-251ENST00000636853 ADCY7P51828 1080 aa17.71■□□□□ 0.43
CLN3-251ENST00000636853 PTPN21Q16825 1174 aa17.71■□□□□ 0.43
CLN3-251ENST00000636853 CCDC93Q567U6 631 aa17.71■□□□□ 0.43
CLN3-251ENST00000636853 GPATCH4Q5T3I0 446 aaKnown RBP17.71■□□□□ 0.43
CLN3-251ENST00000636853 ZNF713Q8N859 430 aaPredicted RBP17.71■□□□□ 0.43
CLN3-251ENST00000636853 PLIN2Q99541 437 aa17.71■□□□□ 0.43
CLN3-251ENST00000636853 PYM1Q9BRP8 204 aaKnown RBP17.71■□□□□ 0.43
CLN3-251ENST00000636853 ZNF277Q9NRM2 450 aaPredicted RBP17.71■□□□□ 0.43
CLN3-251ENST00000636853 LAD1O00515 517 aa17.7■□□□□ 0.42
CLN3-251ENST00000636853 NEMFO60524 1076 aa17.7■□□□□ 0.42
CLN3-251ENST00000636853 NPM3O75607 178 aaKnown RBP17.7■□□□□ 0.42
CLN3-251ENST00000636853 TATDN1Q6P1N9 297 aa17.7■□□□□ 0.42
CLN3-251ENST00000636853 RASSF8Q8NHQ8 419 aa17.7■□□□□ 0.42
CLN3-251ENST00000636853 DISC1Q9NRI5 854 aa17.7■□□□□ 0.42
CLN3-251ENST00000636853 TMEM232C9JQI7 657 aa17.7■□□□□ 0.42
CLN3-251ENST00000636853 OR52Z1P0C646 297 aa17.7■□□□□ 0.42
CLN3-251ENST00000636853 SKILP12757 684 aa17.7■□□□□ 0.42
CLN3-251ENST00000636853 KCNA3P22001 575 aa17.7■□□□□ 0.42
CLN3-251ENST00000636853 PRPHP41219 470 aa17.7■□□□□ 0.42
CLN3-251ENST00000636853 UBA7P41226 1012 aa17.7■□□□□ 0.42
CLN3-251ENST00000636853 STX17P56962 302 aa17.7■□□□□ 0.42
CLN3-251ENST00000636853 GSDMDP57764 484 aa17.7■□□□□ 0.42
CLN3-251ENST00000636853 CCZ1BP86790 482 aa17.7■□□□□ 0.42
CLN3-251ENST00000636853 CCZ1P86791 482 aaPredicted RBP17.7■□□□□ 0.42
CLN3-251ENST00000636853 SIAH1Q8IUQ4 282 aa17.7■□□□□ 0.42
CLN3-251ENST00000636853 KANSL2Q9H9L4 492 aa17.7■□□□□ 0.42
CLN3-251ENST00000636853 SAMSN1Q9NSI8 373 aaKnown RBP17.7■□□□□ 0.42
CLN3-251ENST00000636853 UQCRHLA0A096LP55 91 aa17.69■□□□□ 0.42
CLN3-251ENST00000636853 CBFA2T2O43439 604 aa17.69■□□□□ 0.42
CLN3-251ENST00000636853 GTPBP6O43824 516 aaPredicted RBP17.69■□□□□ 0.42
CLN3-251ENST00000636853 UQCRHP07919 91 aa17.69■□□□□ 0.42
CLN3-251ENST00000636853 LARGE2Q8N3Y3 721 aa17.69■□□□□ 0.42
CLN3-251ENST00000636853 PSMD14O00487 310 aa17.69■□□□□ 0.42
CLN3-251ENST00000636853 ZNF18P17022 549 aa17.69■□□□□ 0.42
CLN3-251ENST00000636853 CDK11BP21127 795 aaKnown RBP17.69■□□□□ 0.42
CLN3-251ENST00000636853 ERCC5P28715 1186 aaPredicted RBP17.69■□□□□ 0.42
CLN3-251ENST00000636853 UBE2SQ16763 222 aa17.69■□□□□ 0.42
CLN3-251ENST00000636853 NAALADL2Q58DX5 795 aa17.69■□□□□ 0.42
CLN3-251ENST00000636853 PPP4R3BQ5MIZ7 849 aa17.69■□□□□ 0.42
CLN3-251ENST00000636853 RRAGBQ5VZM2 374 aa17.69■□□□□ 0.42
CLN3-251ENST00000636853 SLFN13Q68D06 897 aa17.69■□□□□ 0.42
CLN3-251ENST00000636853 ARMCX5Q6P1M9 558 aa17.69■□□□□ 0.42
CLN3-251ENST00000636853 RSBN1LQ6PCB5 846 aaPredicted RBP17.69■□□□□ 0.42
CLN3-251ENST00000636853 POTEDQ86YR6 584 aa17.69■□□□□ 0.42
CLN3-251ENST00000636853 RTKN2Q8IZC4 609 aa17.69■□□□□ 0.42
CLN3-251ENST00000636853 MKL1Q969V6 931 aa17.69■□□□□ 0.42
CLN3-251ENST00000636853 NYAP2Q9P242 653 aa17.69■□□□□ 0.42
CLN3-251ENST00000636853 CLRN2A0PK11 232 aa17.68■□□□□ 0.42
CLN3-251ENST00000636853 PPP1R3GB7ZBB8 358 aa17.68■□□□□ 0.42
CLN3-251ENST00000636853 TCP10L2B9ZVM9 353 aa17.68■□□□□ 0.42
CLN3-251ENST00000636853 ZBTB5O15062 677 aa17.68■□□□□ 0.42
CLN3-251ENST00000636853 MYO1BO43795 1136 aa17.68■□□□□ 0.42
CLN3-251ENST00000636853 ENTPD3O75355 529 aa17.68■□□□□ 0.42
CLN3-251ENST00000636853 SLC1A4P43007 532 aa17.68■□□□□ 0.42
CLN3-251ENST00000636853 JAG1P78504 1218 aa17.68■□□□□ 0.42
CLN3-251ENST00000636853 ICA1Q05084 483 aa17.68■□□□□ 0.42
CLN3-251ENST00000636853 ABCB5Q2M3G0 1257 aa17.68■□□□□ 0.42
CLN3-251ENST00000636853 CCSER1Q9C0I3 900 aa17.68■□□□□ 0.42
CLN3-251ENST00000636853 INTS13Q9NVM9 706 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms