RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 NOL8Q76FK4 1167 aaKnown RBP17.59■□□□□ 0.41
PNKP-218ENST00000625299 ARMCX2Q7L311 632 aa17.59■□□□□ 0.41
PNKP-218ENST00000625299 ZNF467Q7Z7K2 595 aaPredicted RBP17.59■□□□□ 0.41
PNKP-218ENST00000625299 PRPF38AQ8NAV1 312 aaKnown RBP17.59■□□□□ 0.41
PNKP-218ENST00000625299 HAUS7Q99871 368 aa17.59■□□□□ 0.41
PNKP-218ENST00000625299 PUS7LQ9H0K6 701 aaKnown RBP17.59■□□□□ 0.41
PNKP-218ENST00000625299 NKX2-4Q9H2Z4 354 aa17.59■□□□□ 0.41
PNKP-218ENST00000625299 ABHD16BQ9H3Z7 469 aa17.59■□□□□ 0.41
PNKP-218ENST00000625299 HOMER2Q9NSB8 354 aa17.59■□□□□ 0.41
PNKP-218ENST00000625299 ISY1Q9ULR0 285 aaKnown RBP17.59■□□□□ 0.41
PNKP-218ENST00000625299 MINDY4BA8MYZ0 360 aa17.58■□□□□ 0.4
PNKP-218ENST00000625299 HMMRO75330 724 aa17.58■□□□□ 0.4
PNKP-218ENST00000625299 ATP5JP18859 108 aa17.58■□□□□ 0.4
PNKP-218ENST00000625299 RASA1P20936 1047 aa17.58■□□□□ 0.4
PNKP-218ENST00000625299 BEX3Q00994 111 aa17.58■□□□□ 0.4
PNKP-218ENST00000625299 RAB30Q15771 203 aa17.58■□□□□ 0.4
PNKP-218ENST00000625299 FGD4Q96M96 766 aa17.58■□□□□ 0.4
PNKP-218ENST00000625299 UPF3AQ9H1J1 476 aaKnown RBP17.58■□□□□ 0.4
PNKP-218ENST00000625299 CXXC1Q9P0U4 656 aaPredicted RBP17.58■□□□□ 0.4
PNKP-218ENST00000625299 CLIP2Q9UDT6 1046 aa17.58■□□□□ 0.4
PNKP-218ENST00000625299 CHD9Q3L8U1 2897 aa17.57■□□□□ 0.4
PNKP-218ENST00000625299 MRPS5P82675 430 aaKnown RBP17.57■□□□□ 0.4
PNKP-218ENST00000625299 HNRNPUQ00839 825 aaKnown RBP eCLIP17.57■□□□□ 0.4
PNKP-218ENST00000625299 ZSCAN25Q6NSZ9 544 aa17.57■□□□□ 0.4
PNKP-218ENST00000625299 CCDC144CPQ8IYA2 1237 aa17.57■□□□□ 0.4
PNKP-218ENST00000625299 MICALL1Q8N3F8 863 aa17.57■□□□□ 0.4
PNKP-218ENST00000625299 UHRF1Q96T88 793 aaPredicted RBP17.57■□□□□ 0.4
PNKP-218ENST00000625299 MTIF3Q9H2K0 278 aaKnown RBP17.57■□□□□ 0.4
PNKP-218ENST00000625299 IL23AQ9NPF7 189 aa17.57■□□□□ 0.4
PNKP-218ENST00000625299 NYAP2Q9P242 653 aa17.57■□□□□ 0.4
PNKP-218ENST00000625299 ATP2A1O14983 1001 aa17.56■□□□□ 0.4
PNKP-218ENST00000625299 RAB11FIP3O75154 756 aa17.56■□□□□ 0.4
PNKP-218ENST00000625299 CXCL17Q6UXB2 119 aa17.56■□□□□ 0.4
PNKP-218ENST00000625299 OTOP2Q7RTS6 562 aa17.56■□□□□ 0.4
PNKP-218ENST00000625299 HERVK_113Q902F9 699 aa17.56■□□□□ 0.4
PNKP-218ENST00000625299 HIPK3Q9H422 1215 aa17.56■□□□□ 0.4
PNKP-218ENST00000625299 SLC28A3Q9HAS3 691 aa17.56■□□□□ 0.4
PNKP-218ENST00000625299 SLC38A10Q9HBR0 1119 aa17.56■□□□□ 0.4
PNKP-218ENST00000625299 FBXO40Q9UH90 709 aa17.56■□□□□ 0.4
PNKP-218ENST00000625299 UMODL1Q5DID0 1318 aa17.55■□□□□ 0.4
PNKP-218ENST00000625299 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.55■□□□□ 0.4
PNKP-218ENST00000625299 FGBP02675 491 aa17.55■□□□□ 0.4
PNKP-218ENST00000625299 CCL23P55773 120 aa17.55■□□□□ 0.4
PNKP-218ENST00000625299 CNTN2Q02246 1040 aa17.55■□□□□ 0.4
PNKP-218ENST00000625299 SIRT2Q8IXJ6 389 aa17.55■□□□□ 0.4
PNKP-218ENST00000625299 RPAP2Q8IXW5 612 aaPredicted RBP17.55■□□□□ 0.4
PNKP-218ENST00000625299 LRRC47Q8N1G4 583 aaKnown RBP17.55■□□□□ 0.4
PNKP-218ENST00000625299 CHST13Q8NET6 341 aa17.55■□□□□ 0.4
PNKP-218ENST00000625299 CHMP4CQ96CF2 233 aa17.55■□□□□ 0.4
PNKP-218ENST00000625299 YBX2Q9Y2T7 364 aaKnown RBP17.55■□□□□ 0.4
PNKP-218ENST00000625299 TCF20Q9UGU0 1960 aaKnown RBP17.55■□□□□ 0.4
PNKP-218ENST00000625299 CTAGE5O15320 804 aa17.54■□□□□ 0.4
PNKP-218ENST00000625299 PRDM1O75626 825 aa17.54■□□□□ 0.4
PNKP-218ENST00000625299 CD4P01730 458 aa17.54■□□□□ 0.4
PNKP-218ENST00000625299 RABGGTBP53611 331 aa17.54■□□□□ 0.4
PNKP-218ENST00000625299 TNFAIP2Q03169 654 aa17.54■□□□□ 0.4
PNKP-218ENST00000625299 STRBPQ96SI9 672 aaKnown RBP17.54■□□□□ 0.4
PNKP-218ENST00000625299 KATNBL1Q9H079 304 aa17.54■□□□□ 0.4
PNKP-218ENST00000625299 FEM1BQ9UK73 627 aa17.54■□□□□ 0.4
PNKP-218ENST00000625299 NCOR1O75376 2440 aa17.53■□□□□ 0.4
PNKP-218ENST00000625299 PTGS1P23219 599 aa17.53■□□□□ 0.4
PNKP-218ENST00000625299 SBK1Q52WX2 424 aa17.53■□□□□ 0.4
PNKP-218ENST00000625299 TLK2Q86UE8 772 aa17.53■□□□□ 0.4
PNKP-218ENST00000625299 CEP95Q96GE4 821 aa17.53■□□□□ 0.4
PNKP-218ENST00000625299 TSPYL2Q9H2G4 693 aaPredicted RBP17.53■□□□□ 0.4
PNKP-218ENST00000625299 ACAD9Q9H845 621 aa17.53■□□□□ 0.4
PNKP-218ENST00000625299 CHD7Q9P2D1 2997 aa17.52■□□□□ 0.4
PNKP-218ENST00000625299 ASTN1O14525 1302 aa17.52■□□□□ 0.4
PNKP-218ENST00000625299 ZBBXA8MT70 800 aa17.52■□□□□ 0.4
PNKP-218ENST00000625299 GSG1L2A8MUP6 293 aa17.52■□□□□ 0.4
PNKP-218ENST00000625299 TDO2P48775 406 aa17.52■□□□□ 0.4
PNKP-218ENST00000625299 OAZ1P54368 228 aa17.52■□□□□ 0.4
PNKP-218ENST00000625299 IKQ13123 557 aaPredicted RBP17.52■□□□□ 0.4
PNKP-218ENST00000625299 ITGA7Q13683 1181 aa17.52■□□□□ 0.4
PNKP-218ENST00000625299 FSCN1Q16658 493 aaKnown RBP17.52■□□□□ 0.4
PNKP-218ENST00000625299 PPP2R2DQ66LE6 453 aa17.52■□□□□ 0.4
PNKP-218ENST00000625299 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.52■□□□□ 0.4
PNKP-218ENST00000625299 ZNF444Q8N0Y2 327 aaPredicted RBP17.52■□□□□ 0.4
PNKP-218ENST00000625299 NECAB3Q96P71 396 aaPredicted RBP17.52■□□□□ 0.4
PNKP-218ENST00000625299 AP5M1Q9H0R1 490 aa17.52■□□□□ 0.4
PNKP-218ENST00000625299 TRPV6Q9H1D0 765 aa17.52■□□□□ 0.4
PNKP-218ENST00000625299 COG6Q9Y2V7 657 aa17.52■□□□□ 0.4
PNKP-218ENST00000625299 DDX49Q9Y6V7 483 aaKnown RBP17.52■□□□□ 0.4
PNKP-218ENST00000625299 LRRC37A2A6NM11 1700 aa17.52■□□□□ 0.39
PNKP-218ENST00000625299 IGKV6D-41A0A0C4DH26 115 aa17.51■□□□□ 0.39
PNKP-218ENST00000625299 DYNC1LI2O43237 492 aaPredicted RBP17.51■□□□□ 0.39
PNKP-218ENST00000625299 SMARCA5O60264 1052 aaPredicted RBP17.51■□□□□ 0.39
PNKP-218ENST00000625299 CABYRO75952 493 aa17.51■□□□□ 0.39
PNKP-218ENST00000625299 APPP05067 770 aa17.51■□□□□ 0.39
PNKP-218ENST00000625299 BMP3P12645 472 aa17.51■□□□□ 0.39
PNKP-218ENST00000625299 MYOGP15173 224 aa17.51■□□□□ 0.39
PNKP-218ENST00000625299 PSMC6P62333 389 aa17.51■□□□□ 0.39
PNKP-218ENST00000625299 SKIV2LQ15477 1246 aaKnown RBP17.51■□□□□ 0.39
PNKP-218ENST00000625299 SLFN13Q68D06 897 aa17.51■□□□□ 0.39
PNKP-218ENST00000625299 EEPD1Q7L9B9 569 aa17.51■□□□□ 0.39
PNKP-218ENST00000625299 NOC4LQ9BVI4 516 aaKnown RBP17.51■□□□□ 0.39
PNKP-218ENST00000625299 A1CFQ9NQ94 594 aaKnown RBP17.51■□□□□ 0.39
PNKP-218ENST00000625299 RNF146Q9NTX7 359 aa17.51■□□□□ 0.39
PNKP-218ENST00000625299 SLC4A7Q9Y6M7 1214 aa17.51■□□□□ 0.39
PNKP-218ENST00000625299 TMEM232C9JQI7 657 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms