RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 NEK8Q86SG6 692 aa15.41■□□□□ 0.06
NEK3-205ENST00000610828 TBCKQ8TEA7 893 aa15.41■□□□□ 0.06
NEK3-205ENST00000610828 COA7Q96BR5 231 aa15.41■□□□□ 0.06
NEK3-205ENST00000610828 CCAR2Q8N163 923 aaKnown RBP15.41■□□□□ 0.06
NEK3-205ENST00000610828 FAM196BA6NMK8 535 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 PPP1R3GB7ZBB8 358 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 hCG_1984214I3L0E3 225 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 PRPHP41219 470 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 ZNF543Q08ER8 600 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 AOC3Q16853 763 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 SPATA1Q5VX52 437 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 RRAGBQ5VZM2 374 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 ZSCAN29Q8IWY8 852 aaPredicted RBP15.4■□□□□ 0.06
NEK3-205ENST00000610828 ZNF713Q8N859 430 aaPredicted RBP15.4■□□□□ 0.06
NEK3-205ENST00000610828 SCN9AQ15858 1988 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 TNS1Q9HBL0 1735 aaKnown RBP15.4■□□□□ 0.06
NEK3-205ENST00000610828 ESYT2A0FGR8 921 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 RIOK3O14730 519 aaKnown RBP15.4■□□□□ 0.06
NEK3-205ENST00000610828 OR52Z1P0C646 297 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 SLC15A2Q16348 729 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 CCDC96Q2M329 555 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 CNKSR1Q969H4 720 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 PLIN2Q99541 437 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 EHD4Q9H223 541 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 DNAJC18Q9H819 358 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 TMEM260Q9NX78 707 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 CTNND2Q9UQB3 1225 aa15.4■□□□□ 0.06
NEK3-205ENST00000610828 DDTLA6NHG4 134 aaPredicted RBP15.39■□□□□ 0.05
NEK3-205ENST00000610828 RPN1P04843 607 aaKnown RBP15.39■□□□□ 0.05
NEK3-205ENST00000610828 RBM10P98175 930 aaKnown RBP15.39■□□□□ 0.05
NEK3-205ENST00000610828 GOLGA8FQ08AF8 430 aa15.39■□□□□ 0.05
NEK3-205ENST00000610828 GOLGA8DPQ0D2H9 430 aa15.39■□□□□ 0.05
NEK3-205ENST00000610828 PTPN14Q15678 1187 aa15.39■□□□□ 0.05
NEK3-205ENST00000610828 NAALADL2Q58DX5 795 aa15.39■□□□□ 0.05
NEK3-205ENST00000610828 ADGRF4Q8IZF3 695 aa15.39■□□□□ 0.05
NEK3-205ENST00000610828 ZNF592Q92610 1267 aa15.39■□□□□ 0.05
NEK3-205ENST00000610828 DHX36Q9H2U1 1008 aaKnown RBP15.39■□□□□ 0.05
NEK3-205ENST00000610828 RAD21O60216 631 aa15.39■□□□□ 0.05
NEK3-205ENST00000610828 GTF2F1P35269 517 aaKnown RBP eCLIP15.39■□□□□ 0.05
NEK3-205ENST00000610828 ADCY7P51828 1080 aa15.39■□□□□ 0.05
NEK3-205ENST00000610828 FKBP1AP62942 108 aaKnown RBP15.39■□□□□ 0.05
NEK3-205ENST00000610828 EZH2Q15910 746 aaKnown RBP15.39■□□□□ 0.05
NEK3-205ENST00000610828 CEP135Q66GS9 1140 aa15.39■□□□□ 0.05
NEK3-205ENST00000610828 E4F1Q66K89 784 aaPredicted RBP15.39■□□□□ 0.05
NEK3-205ENST00000610828 TTBK2Q6IQ55 1244 aa15.39■□□□□ 0.05
NEK3-205ENST00000610828 KCTD1Q719H9 257 aa15.39■□□□□ 0.05
NEK3-205ENST00000610828 CCDC17Q96LX7 622 aa15.39■□□□□ 0.05
NEK3-205ENST00000610828 MRIQ9BWK5 157 aa15.39■□□□□ 0.05
NEK3-205ENST00000610828 CCSER1Q9C0I3 900 aa15.39■□□□□ 0.05
NEK3-205ENST00000610828 JMJD4Q9H9V9 463 aa15.39■□□□□ 0.05
NEK3-205ENST00000610828 RMND1Q9NWS8 449 aa15.39■□□□□ 0.05
NEK3-205ENST00000610828 SLC16A2P36021 539 aa15.38■□□□□ 0.05
NEK3-205ENST00000610828 HSP90AA2PQ14568 343 aaPredicted RBP15.38■□□□□ 0.05
NEK3-205ENST00000610828 NYAP1Q6ZVC0 841 aa15.38■□□□□ 0.05
NEK3-205ENST00000610828 FAM198AQ9UFP1 575 aa15.38■□□□□ 0.05
NEK3-205ENST00000610828 MYH4Q9Y623 1939 aa15.38■□□□□ 0.05
NEK3-205ENST00000610828 PNMA6FA0A0J9YX94 578 aa15.38■□□□□ 0.05
NEK3-205ENST00000610828 COBLO75128 1261 aa15.38■□□□□ 0.05
NEK3-205ENST00000610828 HDLBPQ00341 1268 aaKnown RBP15.38■□□□□ 0.05
NEK3-205ENST00000610828 EN1Q05925 392 aaPredicted RBP15.38■□□□□ 0.05
NEK3-205ENST00000610828 GPATCH4Q5T3I0 446 aaKnown RBP15.38■□□□□ 0.05
NEK3-205ENST00000610828 ZNF658Q5TYW1 1059 aaPredicted RBP15.38■□□□□ 0.05
NEK3-205ENST00000610828 SPECC1LQ69YQ0 1117 aa15.38■□□□□ 0.05
NEK3-205ENST00000610828 CCDC112Q8NEF3 446 aa15.38■□□□□ 0.05
NEK3-205ENST00000610828 TSC1Q92574 1164 aa15.38■□□□□ 0.05
NEK3-205ENST00000610828 AK8Q96MA6 479 aa15.38■□□□□ 0.05
NEK3-205ENST00000610828 TRIM34Q9BYJ4 488 aa15.38■□□□□ 0.05
NEK3-205ENST00000610828 KCND1Q9NSA2 647 aa15.38■□□□□ 0.05
NEK3-205ENST00000610828 PI4KBQ9UBF8 816 aa15.38■□□□□ 0.05
NEK3-205ENST00000610828 TECP42680 631 aa15.37■□□□□ 0.05
NEK3-205ENST00000610828 SHROOM1Q2M3G4 852 aaPredicted RBP15.37■□□□□ 0.05
NEK3-205ENST00000610828 CERKLQ49MI3 558 aaPredicted RBP15.37■□□□□ 0.05
NEK3-205ENST00000610828 CABP7Q86V35 215 aa15.37■□□□□ 0.05
NEK3-205ENST00000610828 POTEDQ86YR6 584 aa15.37■□□□□ 0.05
NEK3-205ENST00000610828 IDI2Q9BXS1 227 aa15.37■□□□□ 0.05
NEK3-205ENST00000610828 C10orf71Q711Q0 1435 aa15.37■□□□□ 0.05
NEK3-205ENST00000610828 A0A1B0GTH6 734 aa15.36■□□□□ 0.05
NEK3-205ENST00000610828 NR1I3Q14994 352 aa15.36■□□□□ 0.05
NEK3-205ENST00000610828 PPP4R3BQ5MIZ7 849 aa15.36■□□□□ 0.05
NEK3-205ENST00000610828 C7orf43Q8WVR3 580 aa15.36■□□□□ 0.05
NEK3-205ENST00000610828 STK32BQ9NY57 414 aa15.36■□□□□ 0.05
NEK3-205ENST00000610828 SERPINA10Q9UK55 444 aa15.36■□□□□ 0.05
NEK3-205ENST00000610828 MAPK8IP1Q9UQF2 711 aa15.36■□□□□ 0.05
NEK3-205ENST00000610828 PAXBP1Q9Y5B6 917 aa15.36■□□□□ 0.05
NEK3-205ENST00000610828 PPP1R11O60927 126 aaPredicted RBP15.36■□□□□ 0.05
NEK3-205ENST00000610828 KCNJ6P48051 423 aa15.36■□□□□ 0.05
NEK3-205ENST00000610828 PAK1Q13153 545 aa15.36■□□□□ 0.05
NEK3-205ENST00000610828 CDKAL1Q5VV42 579 aa15.36■□□□□ 0.05
NEK3-205ENST00000610828 SH3BP5LQ7L8J4 393 aa15.36■□□□□ 0.05
NEK3-205ENST00000610828 GDAQ9Y2T3 454 aa15.36■□□□□ 0.05
NEK3-205ENST00000610828 GREB1LQ9C091 1923 aaPredicted RBP15.36■□□□□ 0.05
NEK3-205ENST00000610828 PSDA5PKW4 1024 aaPredicted RBP15.35■□□□□ 0.05
NEK3-205ENST00000610828 USP17L10C9JJH3 530 aa15.35■□□□□ 0.05
NEK3-205ENST00000610828 TEX33O43247 280 aa15.35■□□□□ 0.05
NEK3-205ENST00000610828 EEF2P13639 858 aaKnown RBP15.35■□□□□ 0.05
NEK3-205ENST00000610828 PLCG1P19174 1290 aa15.35■□□□□ 0.05
NEK3-205ENST00000610828 TXKP42681 527 aa15.35■□□□□ 0.05
NEK3-205ENST00000610828 TBX2Q13207 712 aaPredicted RBP15.35■□□□□ 0.05
NEK3-205ENST00000610828 APTXQ7Z2E3 356 aaKnown RBP15.35■□□□□ 0.05
NEK3-205ENST00000610828 LRRC15Q8TF66 581 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms