RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 A0A0D9SFI3 127 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 A0A1W2PQ45 241 aaPredicted RBP9.02□□□□□ -0.97
CUX1-219ENST00000606749 A0A1W2PQY0 241 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 TRIM43BA6NCK2 446 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 ADAMTS4O75173 837 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 DUSP11O75319 330 aaKnown RBP9.02□□□□□ -0.97
CUX1-219ENST00000606749 IGHDP01880 384 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 HSPD1P10809 573 aaKnown RBP9.02□□□□□ -0.97
CUX1-219ENST00000606749 SNAP25P60880 206 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 CNTN2Q02246 1040 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 TLE2Q04725 743 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 IKQ13123 557 aaPredicted RBP9.02□□□□□ -0.97
CUX1-219ENST00000606749 ACVR2BQ13705 512 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 KCNA10Q16322 511 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 CCSAPQ6IQ19 270 aaPredicted RBP9.02□□□□□ -0.97
CUX1-219ENST00000606749 KCTD1Q719H9 257 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 Q7L0L9 218 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 SMC5Q8IY18 1101 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 KLHDC9Q8NEP7 349 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 BADQ92934 168 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 TRIM43Q96BQ3 446 aaPredicted RBP9.02□□□□□ -0.97
CUX1-219ENST00000606749 ABHD16BQ9H3Z7 469 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 RWDD1Q9H446 243 aaPredicted RBP9.02□□□□□ -0.97
CUX1-219ENST00000606749 PRDM5Q9NQX1 630 aaPredicted RBP9.02□□□□□ -0.97
CUX1-219ENST00000606749 PDLIM7Q9NR12 457 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 HOMER2Q9NSB8 354 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.02□□□□□ -0.97
CUX1-219ENST00000606749 ISY1Q9ULR0 285 aaKnown RBP9.02□□□□□ -0.97
CUX1-219ENST00000606749 PLXNA1Q9UIW2 1896 aa9.02□□□□□ -0.97
CUX1-219ENST00000606749 TRIM6-TRIM34B2RNG4 842 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 POTEB2H3BUK9 544 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 ADCY6O43306 1168 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 ITGB8P26012 769 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 ACLYP53396 1101 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 NMIQ13287 307 aaPredicted RBP9.01□□□□□ -0.97
CUX1-219ENST00000606749 SHHQ15465 462 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 TKFCQ3LXA3 575 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 CCDC144BQ3MJ40 725 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 B4GALNT3Q6L9W6 998 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 ARMCX2Q7L311 632 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 ZNF589Q86UQ0 364 aaPredicted RBP9.01□□□□□ -0.97
CUX1-219ENST00000606749 CCDC144CPQ8IYA2 1237 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 FAM133AQ8N9E0 248 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 NUP133Q8WUM0 1156 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 RILPL2Q969X0 211 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 YTHDC1Q96MU7 727 aaKnown RBP9.01□□□□□ -0.97
CUX1-219ENST00000606749 TRERF1Q96PN7 1200 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 ACAD9Q9H845 621 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 A1CFQ9NQ94 594 aaKnown RBP9.01□□□□□ -0.97
CUX1-219ENST00000606749 TCP11L1Q9NUJ3 509 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 MTMR10Q9NXD2 777 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 ZHX1Q9UKY1 873 aaPredicted RBP9.01□□□□□ -0.97
CUX1-219ENST00000606749 PRR12Q9ULL5 1215 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 SYNRGQ9UMZ2 1314 aa9.01□□□□□ -0.97
CUX1-219ENST00000606749 MYADML2A6NDP7 307 aa9□□□□□ -0.97
CUX1-219ENST00000606749 SOWAHBA6NEL2 793 aa9□□□□□ -0.97
CUX1-219ENST00000606749 MOXD2PA6NHM9 499 aa9□□□□□ -0.97
CUX1-219ENST00000606749 KIAA0355O15063 1070 aa9□□□□□ -0.97
CUX1-219ENST00000606749 CLTBP09497 229 aa9□□□□□ -0.97
CUX1-219ENST00000606749 ALAS1P13196 640 aa9□□□□□ -0.97
CUX1-219ENST00000606749 SDSP20132 328 aa9□□□□□ -0.97
CUX1-219ENST00000606749 GJA9P57773 515 aa9□□□□□ -0.97
CUX1-219ENST00000606749 IRX5P78411 483 aaPredicted RBP9□□□□□ -0.97
CUX1-219ENST00000606749 NUCB1Q02818 461 aa9□□□□□ -0.97
CUX1-219ENST00000606749 FAAP100Q0VG06 881 aa9□□□□□ -0.97
CUX1-219ENST00000606749 MUM1L1Q5H9M0 696 aa9□□□□□ -0.97
CUX1-219ENST00000606749 RRP12Q5JTH9 1297 aaKnown RBP9□□□□□ -0.97
CUX1-219ENST00000606749 FAM109BQ6ICB4 259 aaPredicted RBP9□□□□□ -0.97
CUX1-219ENST00000606749 TTBK2Q6IQ55 1244 aa9□□□□□ -0.97
CUX1-219ENST00000606749 CCDC174Q6PII3 467 aa9□□□□□ -0.97
CUX1-219ENST00000606749 BTNL9Q6UXG8 535 aa9□□□□□ -0.97
CUX1-219ENST00000606749 RASGRP2Q7LDG7 609 aa9□□□□□ -0.97
CUX1-219ENST00000606749 ANKRD33Q7Z3H0 272 aa9□□□□□ -0.97
CUX1-219ENST00000606749 CHD1LQ86WJ1 897 aa9□□□□□ -0.97
CUX1-219ENST00000606749 PLEKHM2Q8IWE5 1019 aa9□□□□□ -0.97
CUX1-219ENST00000606749 SLC17A8Q8NDX2 589 aa9□□□□□ -0.97
CUX1-219ENST00000606749 DCAF4Q8WV16 495 aa9□□□□□ -0.97
CUX1-219ENST00000606749 TOX2Q96NM4 488 aa9□□□□□ -0.97
CUX1-219ENST00000606749 TMEM47Q9BQJ4 181 aa9□□□□□ -0.97
CUX1-219ENST00000606749 KATNBL1Q9H079 304 aa9□□□□□ -0.97
CUX1-219ENST00000606749 OSBPL3Q9H4L5 887 aa9□□□□□ -0.97
CUX1-219ENST00000606749 TOMM22Q9NS69 142 aa9□□□□□ -0.97
CUX1-219ENST00000606749 RNF146Q9NTX7 359 aa9□□□□□ -0.97
CUX1-219ENST00000606749 MTMR7Q9Y216 660 aa9□□□□□ -0.97
CUX1-219ENST00000606749 ASB14A6NK59 587 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 DCDC2CA8MYV0 355 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 PQBP1O60828 265 aaKnown RBP8.99□□□□□ -0.97
CUX1-219ENST00000606749 C6orf222P0C671 652 aaPredicted RBP8.99□□□□□ -0.97
CUX1-219ENST00000606749 TOP1P11387 765 aaKnown RBP8.99□□□□□ -0.97
CUX1-219ENST00000606749 PCP11498 1178 aaKnown RBP8.99□□□□□ -0.97
CUX1-219ENST00000606749 CST5P28325 142 aaPredicted RBP8.99□□□□□ -0.97
CUX1-219ENST00000606749 SLC16A2P36021 539 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 CDK7P50613 346 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 HAND2P61296 217 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 NKX3-2P78367 333 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 CCDC96Q2M329 555 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 GNASQ5JWF2 1037 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 C9orf50Q5SZB4 431 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 AKNAD1Q5T1N1 836 aa8.99□□□□□ -0.97
CUX1-219ENST00000606749 MFSD6Q6ZSS7 791 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms