RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 DDX20Q9UHI6 824 aaKnown RBP10.32□□□□□ -0.76
TRIM28-214ENST00000600840 ZNF214Q9UL59 606 aaPredicted RBP10.32□□□□□ -0.76
TRIM28-214ENST00000600840 SNX14Q9Y5W7 946 aa10.32□□□□□ -0.76
TRIM28-214ENST00000600840 TRIM43BA6NCK2 446 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 E7EWF7 191 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 VWA5AO00534 786 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 STRNO43815 780 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 PGK2P07205 417 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 TAL1P17542 331 aaPredicted RBP10.31□□□□□ -0.76
TRIM28-214ENST00000600840 ITGB8P26012 769 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 IMMTQ16891 758 aaKnown RBP10.31□□□□□ -0.76
TRIM28-214ENST00000600840 OLFML2BQ68BL8 750 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 AMOTL1Q8IY63 956 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 MB21D1Q8N884 522 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 ADAMTS19Q8TE59 1207 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 TRIM43Q96BQ3 446 aaPredicted RBP10.31□□□□□ -0.76
TRIM28-214ENST00000600840 DDRGK1Q96HY6 314 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 MAML3Q96JK9 1138 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 SH2D4AQ9H788 454 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 MKNK2Q9HBH9 465 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 PDLIM7Q9NR12 457 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 NYAP2Q9P242 653 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 CLIP2Q9UDT6 1046 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 PPP1R9AQ9ULJ8 1098 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 RIPK3Q9Y572 518 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 TCF20Q9UGU0 1960 aaKnown RBP10.31□□□□□ -0.76
TRIM28-214ENST00000600840 NEDD4P46934 1319 aa10.31□□□□□ -0.76
TRIM28-214ENST00000600840 TTC28Q96AY4 2481 aa10.3□□□□□ -0.76
TRIM28-214ENST00000600840 F5H6K3 240 aa10.3□□□□□ -0.76
TRIM28-214ENST00000600840 DNM1LO00429 736 aa10.3□□□□□ -0.76
TRIM28-214ENST00000600840 NDUFB10O96000 172 aa10.3□□□□□ -0.76
TRIM28-214ENST00000600840 PCP11498 1178 aaKnown RBP10.3□□□□□ -0.76
TRIM28-214ENST00000600840 ANTXR2P58335 489 aa10.3□□□□□ -0.76
TRIM28-214ENST00000600840 EXOSC10Q01780 885 aaKnown RBP10.3□□□□□ -0.76
TRIM28-214ENST00000600840 KLRC3Q07444 240 aa10.3□□□□□ -0.76
TRIM28-214ENST00000600840 FAM47AQ5JRC9 791 aa10.3□□□□□ -0.76
TRIM28-214ENST00000600840 SLC39A5Q6ZMH5 540 aa10.3□□□□□ -0.76
TRIM28-214ENST00000600840 RIOX2Q8IUF8 465 aa10.3□□□□□ -0.76
TRIM28-214ENST00000600840 MB21D2Q8IYB1 491 aaPredicted RBP10.3□□□□□ -0.76
TRIM28-214ENST00000600840 NEDD1Q8NHV4 660 aa10.3□□□□□ -0.76
TRIM28-214ENST00000600840 CHMP4CQ96CF2 233 aa10.3□□□□□ -0.76
TRIM28-214ENST00000600840 CEP95Q96GE4 821 aa10.3□□□□□ -0.76
TRIM28-214ENST00000600840 RNPC3Q96LT9 517 aaKnown RBP10.3□□□□□ -0.76
TRIM28-214ENST00000600840 NECAB3Q96P71 396 aaPredicted RBP10.3□□□□□ -0.76
TRIM28-214ENST00000600840 MROH8Q9H579 483 aa10.3□□□□□ -0.76
TRIM28-214ENST00000600840 IL17RBQ9NRM6 502 aa10.3□□□□□ -0.76
TRIM28-214ENST00000600840 RBM19Q9Y4C8 960 aaKnown RBP10.3□□□□□ -0.76
TRIM28-214ENST00000600840 CDH23Q9H251 3354 aa10.3□□□□□ -0.76
TRIM28-214ENST00000600840 EIF5BO60841 1220 aaKnown RBP10.29□□□□□ -0.76
TRIM28-214ENST00000600840 MYCNP04198 464 aaPredicted RBP10.29□□□□□ -0.76
TRIM28-214ENST00000600840 FCER1AP12319 257 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 DNAJB2P25686 324 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 STAT3P40763 770 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 NT5C2P49902 561 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 ANAPC15P60006 121 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 ZNF792Q3KQV3 632 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 RCSD1Q6JBY9 416 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 CYB5R4Q7L1T6 521 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 RASGRP2Q7LDG7 609 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 ABRAQ8N0Z2 381 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 LRRC47Q8N1G4 583 aaKnown RBP10.29□□□□□ -0.76
TRIM28-214ENST00000600840 MKL1Q969V6 931 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 TBC1D32Q96NH3 1257 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 ASB2Q96Q27 587 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 MMP19Q99542 508 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 TM6SF1Q9BZW5 370 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 GOPCQ9HD26 462 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 TCP11L1Q9NUJ3 509 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 MTMR4Q9NYA4 1195 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 ZSWIM5Q9P217 1185 aa10.29□□□□□ -0.76
TRIM28-214ENST00000600840 MCM3APO60318 1980 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 LAMA4Q16363 1823 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 PLIN4Q96Q06 1357 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 SEPT4O43236 478 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 NMT2O60551 498 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 SLC25A27O95847 323 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 SLC4A3P48751 1232 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 IRX5P78411 483 aaPredicted RBP10.28□□□□□ -0.76
TRIM28-214ENST00000600840 TFAP4Q01664 338 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 PDE4BQ07343 736 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 MFSD6Q6ZSS7 791 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 ZNF444Q8N0Y2 327 aaPredicted RBP10.28□□□□□ -0.76
TRIM28-214ENST00000600840 FBXL16Q8N461 479 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 IGDCC4Q8TDY8 1250 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 ANKS1AQ92625 1134 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 FERMT2Q96AC1 680 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 LENG1Q96BZ8 264 aaPredicted RBP10.28□□□□□ -0.76
TRIM28-214ENST00000600840 UHRF1Q96T88 793 aaPredicted RBP10.28□□□□□ -0.76
TRIM28-214ENST00000600840 SLF1Q9BQI6 1058 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 C22orf23Q9BZE7 217 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 RNF41Q9H4P4 317 aaPredicted RBP10.28□□□□□ -0.76
TRIM28-214ENST00000600840 ZNF576Q9H609 170 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 RAVER2Q9HCJ3 691 aaKnown RBP10.28□□□□□ -0.76
TRIM28-214ENST00000600840 ZSWIM6Q9HCJ5 1215 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 THEGQ9P2T0 379 aa10.28□□□□□ -0.76
TRIM28-214ENST00000600840 B4E1Z4 1266 aa10.27□□□□□ -0.77
TRIM28-214ENST00000600840 MSCO60682 206 aa10.27□□□□□ -0.77
TRIM28-214ENST00000600840 KDM4AO75164 1064 aa10.27□□□□□ -0.77
TRIM28-214ENST00000600840 SLC3A2P08195 630 aaKnown RBP10.27□□□□□ -0.77
TRIM28-214ENST00000600840 ZNF865P0CJ78 1059 aaPredicted RBP10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms