RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 STAG1Q8WVM7 1258 aa20.83■□□□□ 0.93
SHKBP1-223ENST00000600552 STARD7Q9NQZ5 370 aa20.83■□□□□ 0.93
SHKBP1-223ENST00000600552 RNF146Q9NTX7 359 aa20.83■□□□□ 0.93
SHKBP1-223ENST00000600552 TMEM39AQ9NV64 488 aa20.83■□□□□ 0.93
SHKBP1-223ENST00000600552 MYADML2A6NDP7 307 aa20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 TRIM6-TRIM34B2RNG4 842 aa20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 FOXP2O15409 715 aa20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 ADAMTS4O75173 837 aa20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 CLTBP09497 229 aa20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 C6orf222P0C671 652 aaPredicted RBP20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 PDE1AP54750 535 aa20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 CCDC144BQ3MJ40 725 aa20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 B4GALNT3Q6L9W6 998 aa20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 MAMDC4Q6UXC1 1216 aa20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 ARMCX2Q7L311 632 aa20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 FAM160B2Q86V87 743 aa20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 FAM227BQ96M60 508 aa20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 ACAD9Q9H845 621 aa20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 IL17RBQ9NRM6 502 aa20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 TACC3Q9Y6A5 838 aa20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 LTBP2Q14767 1821 aa20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 PLIN4Q96Q06 1357 aa20.82■□□□□ 0.92
SHKBP1-223ENST00000600552 RAG1P15918 1043 aa20.81■□□□□ 0.92
SHKBP1-223ENST00000600552 OAZ1P54368 228 aa20.81■□□□□ 0.92
SHKBP1-223ENST00000600552 RCSD1Q6JBY9 416 aa20.81■□□□□ 0.92
SHKBP1-223ENST00000600552 CCDC144CPQ8IYA2 1237 aa20.81■□□□□ 0.92
SHKBP1-223ENST00000600552 RILPL2Q969X0 211 aa20.81■□□□□ 0.92
SHKBP1-223ENST00000600552 GMCL1Q96IK5 515 aa20.81■□□□□ 0.92
SHKBP1-223ENST00000600552 TRERF1Q96PN7 1200 aa20.81■□□□□ 0.92
SHKBP1-223ENST00000600552 LNPKQ9C0E8 428 aa20.81■□□□□ 0.92
SHKBP1-223ENST00000600552 SPC25Q9HBM1 224 aa20.81■□□□□ 0.92
SHKBP1-223ENST00000600552 SYNPO2Q9UMS6 1093 aa20.81■□□□□ 0.92
SHKBP1-223ENST00000600552 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.81■□□□□ 0.92
SHKBP1-223ENST00000600552 SALL3Q9BXA9 1300 aa20.8■□□□□ 0.92
SHKBP1-223ENST00000600552 DLL1O00548 723 aa20.8■□□□□ 0.92
SHKBP1-223ENST00000600552 DUSP11O75319 330 aaKnown RBP20.8■□□□□ 0.92
SHKBP1-223ENST00000600552 ITGB8P26012 769 aa20.8■□□□□ 0.92
SHKBP1-223ENST00000600552 PPP4R3BQ5MIZ7 849 aa20.8■□□□□ 0.92
SHKBP1-223ENST00000600552 ZNF467Q7Z7K2 595 aaPredicted RBP20.8■□□□□ 0.92
SHKBP1-223ENST00000600552 NUP133Q8WUM0 1156 aa20.8■□□□□ 0.92
SHKBP1-223ENST00000600552 FGD4Q96M96 766 aa20.8■□□□□ 0.92
SHKBP1-223ENST00000600552 TSEN34Q9BSV6 310 aaKnown RBP20.8■□□□□ 0.92
SHKBP1-223ENST00000600552 ABHD16BQ9H3Z7 469 aa20.8■□□□□ 0.92
SHKBP1-223ENST00000600552 HELLSQ9NRZ9 838 aa20.8■□□□□ 0.92
SHKBP1-223ENST00000600552 STXBP5LQ9Y2K9 1186 aa20.8■□□□□ 0.92
SHKBP1-223ENST00000600552 DDX49Q9Y6V7 483 aaKnown RBP20.8■□□□□ 0.92
SHKBP1-223ENST00000600552 A0A0D9SFI3 127 aa20.79■□□□□ 0.92
SHKBP1-223ENST00000600552 DCDC2CA8MYV0 355 aa20.79■□□□□ 0.92
SHKBP1-223ENST00000600552 ADCY6O43306 1168 aa20.79■□□□□ 0.92
SHKBP1-223ENST00000600552 FDX1P10109 184 aa20.79■□□□□ 0.92
SHKBP1-223ENST00000600552 HAND2P61296 217 aa20.79■□□□□ 0.92
SHKBP1-223ENST00000600552 GNASQ5JWF2 1037 aa20.79■□□□□ 0.92
SHKBP1-223ENST00000600552 C1orf53Q5VUE5 145 aa20.79■□□□□ 0.92
SHKBP1-223ENST00000600552 GPCPD1Q9NPB8 672 aa20.79■□□□□ 0.92
SHKBP1-223ENST00000600552 PRR12Q9ULL5 1215 aa20.79■□□□□ 0.92
SHKBP1-223ENST00000600552 SLC16A2P36021 539 aa20.78■□□□□ 0.92
SHKBP1-223ENST00000600552 NMIQ13287 307 aaPredicted RBP20.78■□□□□ 0.92
SHKBP1-223ENST00000600552 MCMDC2Q4G0Z9 681 aa20.78■□□□□ 0.92
SHKBP1-223ENST00000600552 ZNF697Q5TEC3 545 aa20.78■□□□□ 0.92
SHKBP1-223ENST00000600552 TTBK2Q6IQ55 1244 aa20.78■□□□□ 0.92
SHKBP1-223ENST00000600552 NSMFQ6X4W1 530 aa20.78■□□□□ 0.92
SHKBP1-223ENST00000600552 EEPD1Q7L9B9 569 aa20.78■□□□□ 0.92
SHKBP1-223ENST00000600552 KLHDC9Q8NEP7 349 aa20.78■□□□□ 0.92
SHKBP1-223ENST00000600552 GLT1D1Q96MS3 346 aa20.78■□□□□ 0.92
SHKBP1-223ENST00000600552 A1CFQ9NQ94 594 aaKnown RBP20.78■□□□□ 0.92
SHKBP1-223ENST00000600552 CCPG1Q9ULG6 757 aa20.78■□□□□ 0.92
SHKBP1-223ENST00000600552 ZNF536O15090 1300 aa20.78■□□□□ 0.92
SHKBP1-223ENST00000600552 FRMPD2Q68DX3 1309 aaPredicted RBP20.78■□□□□ 0.92
SHKBP1-223ENST00000600552 SOWAHBA6NEL2 793 aa20.77■□□□□ 0.92
SHKBP1-223ENST00000600552 FGAP02671 866 aa20.77■□□□□ 0.92
SHKBP1-223ENST00000600552 ASGR1P07306 291 aa20.77■□□□□ 0.92
SHKBP1-223ENST00000600552 EPHB4P54760 987 aa20.77■□□□□ 0.92
SHKBP1-223ENST00000600552 BEX3Q00994 111 aa20.77■□□□□ 0.92
SHKBP1-223ENST00000600552 HDAC1Q13547 482 aaPredicted RBP20.77■□□□□ 0.92
SHKBP1-223ENST00000600552 MUM1L1Q5H9M0 696 aa20.77■□□□□ 0.92
SHKBP1-223ENST00000600552 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.76■□□□□ 0.91
SHKBP1-223ENST00000600552 MOXD2PA6NHM9 499 aa20.76■□□□□ 0.91
SHKBP1-223ENST00000600552 KIAA0355O15063 1070 aa20.76■□□□□ 0.91
SHKBP1-223ENST00000600552 TNFAIP2Q03169 654 aa20.76■□□□□ 0.91
SHKBP1-223ENST00000600552 FAAP100Q0VG06 881 aa20.76■□□□□ 0.91
SHKBP1-223ENST00000600552 TKFCQ3LXA3 575 aa20.76■□□□□ 0.91
SHKBP1-223ENST00000600552 FAM133AQ8N9E0 248 aa20.76■□□□□ 0.91
SHKBP1-223ENST00000600552 PCSK9Q8NBP7 692 aaKnown RBP20.76■□□□□ 0.91
SHKBP1-223ENST00000600552 RNPC3Q96LT9 517 aaKnown RBP20.76■□□□□ 0.91
SHKBP1-223ENST00000600552 GUCD1Q96NT3 240 aa20.76■□□□□ 0.91
SHKBP1-223ENST00000600552 PURBQ96QR8 312 aaKnown RBP20.76■□□□□ 0.91
SHKBP1-223ENST00000600552 ANAPC4Q9UJX5 808 aa20.76■□□□□ 0.91
SHKBP1-223ENST00000600552 ORC4O43929 436 aa20.75■□□□□ 0.91
SHKBP1-223ENST00000600552 PTGS1P23219 599 aa20.75■□□□□ 0.91
SHKBP1-223ENST00000600552 FPGSQ05932 587 aa20.75■□□□□ 0.91
SHKBP1-223ENST00000600552 ALX1Q15699 326 aa20.75■□□□□ 0.91
SHKBP1-223ENST00000600552 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.75■□□□□ 0.91
SHKBP1-223ENST00000600552 ZNF589Q86UQ0 364 aaPredicted RBP20.75■□□□□ 0.91
SHKBP1-223ENST00000600552 DCAF4Q8WV16 495 aa20.75■□□□□ 0.91
SHKBP1-223ENST00000600552 TMEM47Q9BQJ4 181 aa20.75■□□□□ 0.91
SHKBP1-223ENST00000600552 ASB14A6NK59 587 aa20.74■□□□□ 0.91
SHKBP1-223ENST00000600552 HSPD1P10809 573 aaKnown RBP20.74■□□□□ 0.91
SHKBP1-223ENST00000600552 GJA9P57773 515 aa20.74■□□□□ 0.91
SHKBP1-223ENST00000600552 FAM109BQ6ICB4 259 aaPredicted RBP20.74■□□□□ 0.91
SHKBP1-223ENST00000600552 CCSAPQ6IQ19 270 aaPredicted RBP20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms