RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 STAT2P52630 851 aa12.61□□□□□ -0.39
VRK3-214ENST00000598553 LRRC41Q15345 812 aa12.61□□□□□ -0.39
VRK3-214ENST00000598553 CCDC96Q2M329 555 aa12.61□□□□□ -0.39
VRK3-214ENST00000598553 AKNAD1Q5T1N1 836 aa12.61□□□□□ -0.39
VRK3-214ENST00000598553 TTC22Q5TAA0 569 aa12.61□□□□□ -0.39
VRK3-214ENST00000598553 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.61□□□□□ -0.39
VRK3-214ENST00000598553 STAG1Q8WVM7 1258 aa12.61□□□□□ -0.39
VRK3-214ENST00000598553 FERMT2Q96AC1 680 aa12.61□□□□□ -0.39
VRK3-214ENST00000598553 KATNBL1Q9H079 304 aa12.61□□□□□ -0.39
VRK3-214ENST00000598553 GPCPD1Q9NPB8 672 aa12.61□□□□□ -0.39
VRK3-214ENST00000598553 A1CFQ9NQ94 594 aaKnown RBP12.61□□□□□ -0.39
VRK3-214ENST00000598553 RNF146Q9NTX7 359 aa12.61□□□□□ -0.39
VRK3-214ENST00000598553 SYNPO2Q9UMS6 1093 aa12.61□□□□□ -0.39
VRK3-214ENST00000598553 SOWAHBA6NEL2 793 aa12.6□□□□□ -0.39
VRK3-214ENST00000598553 B4E1Z4 1266 aa12.6□□□□□ -0.39
VRK3-214ENST00000598553 ADAMTS4O75173 837 aa12.6□□□□□ -0.39
VRK3-214ENST00000598553 PDHBP11177 359 aa12.6□□□□□ -0.39
VRK3-214ENST00000598553 RTP1P59025 263 aa12.6□□□□□ -0.39
VRK3-214ENST00000598553 MDM2Q00987 491 aaPredicted RBP12.6□□□□□ -0.39
VRK3-214ENST00000598553 FAM133AQ8N9E0 248 aa12.6□□□□□ -0.39
VRK3-214ENST00000598553 DIS3Q9Y2L1 958 aaKnown RBP12.6□□□□□ -0.39
VRK3-214ENST00000598553 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.59□□□□□ -0.39
VRK3-214ENST00000598553 RBAK-RBAKDNI3L0D1 243 aa12.59□□□□□ -0.39
VRK3-214ENST00000598553 MSCO60682 206 aa12.59□□□□□ -0.39
VRK3-214ENST00000598553 GOLGA8HP0CJ92 632 aa12.59□□□□□ -0.39
VRK3-214ENST00000598553 ALAS1P13196 640 aa12.59□□□□□ -0.39
VRK3-214ENST00000598553 ADCYAP1R1P41586 468 aa12.59□□□□□ -0.39
VRK3-214ENST00000598553 IKQ13123 557 aaPredicted RBP12.59□□□□□ -0.39
VRK3-214ENST00000598553 COL9A3Q14050 684 aaPredicted RBP12.59□□□□□ -0.39
VRK3-214ENST00000598553 TRIM60Q495X7 471 aa12.59□□□□□ -0.39
VRK3-214ENST00000598553 MAMDC4Q6UXC1 1216 aa12.59□□□□□ -0.39
VRK3-214ENST00000598553 ARMCX2Q7L311 632 aa12.59□□□□□ -0.39
VRK3-214ENST00000598553 SH3RF1Q7Z6J0 888 aa12.59□□□□□ -0.39
VRK3-214ENST00000598553 DDX11Q96FC9 970 aa12.59□□□□□ -0.39
VRK3-214ENST00000598553 DIAPH3Q9NSV4 1193 aa12.59□□□□□ -0.39
VRK3-214ENST00000598553 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.59□□□□□ -0.39
VRK3-214ENST00000598553 ZHX1Q9UKY1 873 aaPredicted RBP12.59□□□□□ -0.39
VRK3-214ENST00000598553 RANBP2P49792 3224 aaKnown RBP12.59□□□□□ -0.39
VRK3-214ENST00000598553 SYNRGQ9UMZ2 1314 aa12.59□□□□□ -0.39
VRK3-214ENST00000598553 NFIBO00712 420 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 CTAGE5O15320 804 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 PLA2G6O60733 806 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 KDM4AO75164 1064 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 TOP1P11387 765 aaKnown RBP12.58□□□□□ -0.4
VRK3-214ENST00000598553 ITGB8P26012 769 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 COPB2P35606 906 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 OAZ1P54368 228 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 PTH1RQ03431 593 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 SNX17Q15036 470 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 SLC39A5Q6ZMH5 540 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 MFSD6Q6ZSS7 791 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 FAM160B2Q86V87 743 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 CCDC144CPQ8IYA2 1237 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 ANKRD35Q8N283 1001 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 CHST13Q8NET6 341 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 TRERF1Q96PN7 1200 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 RANBP17Q9H2T7 1088 aaKnown RBP12.58□□□□□ -0.4
VRK3-214ENST00000598553 ACAD9Q9H845 621 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 XPNPEP3Q9NQH7 507 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 TCP11L1Q9NUJ3 509 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 SLC5A4Q9NY91 659 aa12.58□□□□□ -0.4
VRK3-214ENST00000598553 BAZ2BQ9UIF8 2168 aaKnown RBP12.58□□□□□ -0.4
VRK3-214ENST00000598553 SNHG28P0DPA3 235 aa12.57□□□□□ -0.4
VRK3-214ENST00000598553 ZNF543Q08ER8 600 aa12.57□□□□□ -0.4
VRK3-214ENST00000598553 SYDE2Q5VT97 1194 aa12.57□□□□□ -0.4
VRK3-214ENST00000598553 CCSAPQ6IQ19 270 aaPredicted RBP12.57□□□□□ -0.4
VRK3-214ENST00000598553 BTNL9Q6UXG8 535 aa12.57□□□□□ -0.4
VRK3-214ENST00000598553 SLC30A10Q6XR72 485 aa12.57□□□□□ -0.4
VRK3-214ENST00000598553 CYB5R4Q7L1T6 521 aa12.57□□□□□ -0.4
VRK3-214ENST00000598553 TICAM2Q86XR7 235 aa12.57□□□□□ -0.4
VRK3-214ENST00000598553 DCAF4Q8WV16 495 aa12.57□□□□□ -0.4
VRK3-214ENST00000598553 SENP2Q9HC62 589 aa12.57□□□□□ -0.4
VRK3-214ENST00000598553 PDGFCQ9NRA1 345 aa12.57□□□□□ -0.4
VRK3-214ENST00000598553 CCPG1Q9ULG6 757 aa12.57□□□□□ -0.4
VRK3-214ENST00000598553 PHF24Q9UPV7 400 aa12.57□□□□□ -0.4
VRK3-214ENST00000598553 ATP11BQ9Y2G3 1177 aa12.57□□□□□ -0.4
VRK3-214ENST00000598553 CTDP1Q9Y5B0 961 aaPredicted RBP12.57□□□□□ -0.4
VRK3-214ENST00000598553 SYNGAP1Q96PV0 1343 aa12.57□□□□□ -0.4
VRK3-214ENST00000598553 KIAA1217Q5T5P2 1943 aa12.56□□□□□ -0.4
VRK3-214ENST00000598553 A0A1W2PQ45 241 aaPredicted RBP12.56□□□□□ -0.4
VRK3-214ENST00000598553 A0A1W2PQY0 241 aa12.56□□□□□ -0.4
VRK3-214ENST00000598553 RARBP10826 455 aa12.56□□□□□ -0.4
VRK3-214ENST00000598553 AKR1A1P14550 325 aa12.56□□□□□ -0.4
VRK3-214ENST00000598553 ACVR2BQ13705 512 aa12.56□□□□□ -0.4
VRK3-214ENST00000598553 SLC35G1Q2M3R5 365 aa12.56□□□□□ -0.4
VRK3-214ENST00000598553 STOX1Q6ZVD7 989 aa12.56□□□□□ -0.4
VRK3-214ENST00000598553 EEPD1Q7L9B9 569 aa12.56□□□□□ -0.4
VRK3-214ENST00000598553 KLHDC9Q8NEP7 349 aa12.56□□□□□ -0.4
VRK3-214ENST00000598553 CHURC1Q8WUH1 139 aa12.56□□□□□ -0.4
VRK3-214ENST00000598553 CLEC4DQ8WXI8 215 aa12.56□□□□□ -0.4
VRK3-214ENST00000598553 DSCC1Q9BVC3 393 aa12.56□□□□□ -0.4
VRK3-214ENST00000598553 UBA5Q9GZZ9 404 aa12.56□□□□□ -0.4
VRK3-214ENST00000598553 PDLIM7Q9NR12 457 aa12.56□□□□□ -0.4
VRK3-214ENST00000598553 DNAH12Q6ZR08 3092 aa12.56□□□□□ -0.4
VRK3-214ENST00000598553 TRIM43BA6NCK2 446 aa12.55□□□□□ -0.4
VRK3-214ENST00000598553 KBTBD13C9JR72 458 aa12.55□□□□□ -0.4
VRK3-214ENST00000598553 POTEB2H3BUK9 544 aa12.55□□□□□ -0.4
VRK3-214ENST00000598553 ZNF213O14771 459 aa12.55□□□□□ -0.4
VRK3-214ENST00000598553 ICAM1P05362 532 aa12.55□□□□□ -0.4
VRK3-214ENST00000598553 CHMLP26374 656 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms