RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 TRERF1Q96PN7 1200 aa17.75■□□□□ 0.43
LIG1-215ENST00000597901 ZKSCAN3Q9BRR0 538 aa17.75■□□□□ 0.43
LIG1-215ENST00000597901 GPCPD1Q9NPB8 672 aa17.75■□□□□ 0.43
LIG1-215ENST00000597901 CNPY2Q9Y2B0 182 aa17.75■□□□□ 0.43
LIG1-215ENST00000597901 MYCNP04198 464 aaPredicted RBP17.74■□□□□ 0.43
LIG1-215ENST00000597901 RARBP10826 455 aa17.74■□□□□ 0.43
LIG1-215ENST00000597901 ALAS1P13196 640 aa17.74■□□□□ 0.43
LIG1-215ENST00000597901 SYN1P17600 705 aa17.74■□□□□ 0.43
LIG1-215ENST00000597901 LRRC41Q15345 812 aa17.74■□□□□ 0.43
LIG1-215ENST00000597901 IMMTQ16891 758 aaKnown RBP17.74■□□□□ 0.43
LIG1-215ENST00000597901 DGKHQ86XP1 1220 aa17.74■□□□□ 0.43
LIG1-215ENST00000597901 IL25Q9H293 177 aa17.74■□□□□ 0.43
LIG1-215ENST00000597901 ACAD9Q9H845 621 aa17.74■□□□□ 0.43
LIG1-215ENST00000597901 RNF146Q9NTX7 359 aa17.74■□□□□ 0.43
LIG1-215ENST00000597901 ZNF236Q9UL36 1845 aa17.74■□□□□ 0.43
LIG1-215ENST00000597901 NEDD4P46934 1319 aa17.73■□□□□ 0.43
LIG1-215ENST00000597901 SYNGAP1Q96PV0 1343 aa17.73■□□□□ 0.43
LIG1-215ENST00000597901 KBTBD13C9JR72 458 aa17.73■□□□□ 0.43
LIG1-215ENST00000597901 KDM4AO75164 1064 aa17.73■□□□□ 0.43
LIG1-215ENST00000597901 PDHBP11177 359 aa17.73■□□□□ 0.43
LIG1-215ENST00000597901 NT5C2P49902 561 aa17.73■□□□□ 0.43
LIG1-215ENST00000597901 ATN1P54259 1190 aaPredicted RBP17.73■□□□□ 0.43
LIG1-215ENST00000597901 CNTN2Q02246 1040 aa17.73■□□□□ 0.43
LIG1-215ENST00000597901 CCDC178Q5BJE1 867 aa17.73■□□□□ 0.43
LIG1-215ENST00000597901 SYDE2Q5VT97 1194 aa17.73■□□□□ 0.43
LIG1-215ENST00000597901 FGD4Q96M96 766 aa17.73■□□□□ 0.43
LIG1-215ENST00000597901 GDF15Q99988 308 aa17.73■□□□□ 0.43
LIG1-215ENST00000597901 XPNPEP3Q9NQH7 507 aa17.73■□□□□ 0.43
LIG1-215ENST00000597901 ZSWIM5Q9P217 1185 aa17.73■□□□□ 0.43
LIG1-215ENST00000597901 FAM184BQ9ULE4 1060 aa17.73■□□□□ 0.43
LIG1-215ENST00000597901 FRMPD2Q68DX3 1309 aaPredicted RBP17.72■□□□□ 0.43
LIG1-215ENST00000597901 PARP14Q460N5 1801 aa17.72■□□□□ 0.43
LIG1-215ENST00000597901 A0A1W2PPC1 479 aa17.72■□□□□ 0.43
LIG1-215ENST00000597901 B4E1Z4 1266 aa17.72■□□□□ 0.43
LIG1-215ENST00000597901 POTEB2H3BUK9 544 aa17.72■□□□□ 0.43
LIG1-215ENST00000597901 SNHG28P0DPA3 235 aa17.72■□□□□ 0.43
LIG1-215ENST00000597901 AKR1A1P14550 325 aa17.72■□□□□ 0.43
LIG1-215ENST00000597901 CHMLP26374 656 aa17.72■□□□□ 0.43
LIG1-215ENST00000597901 ADCYAP1R1P41586 468 aa17.72■□□□□ 0.43
LIG1-215ENST00000597901 ACVR2BQ13705 512 aa17.72■□□□□ 0.43
LIG1-215ENST00000597901 SLC39A5Q6ZMH5 540 aa17.72■□□□□ 0.43
LIG1-215ENST00000597901 IQCA1Q86XH1 822 aa17.72■□□□□ 0.43
LIG1-215ENST00000597901 FAM133AQ8N9E0 248 aa17.72■□□□□ 0.43
LIG1-215ENST00000597901 ANKS1AQ92625 1134 aa17.72■□□□□ 0.43
LIG1-215ENST00000597901 RANBP17Q9H2T7 1088 aaKnown RBP17.72■□□□□ 0.43
LIG1-215ENST00000597901 A1CFQ9NQ94 594 aaKnown RBP17.72■□□□□ 0.43
LIG1-215ENST00000597901 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.72■□□□□ 0.43
LIG1-215ENST00000597901 SOWAHBA6NEL2 793 aa17.71■□□□□ 0.43
LIG1-215ENST00000597901 PGK1P00558 417 aa17.71■□□□□ 0.43
LIG1-215ENST00000597901 ICAM1P05362 532 aa17.71■□□□□ 0.43
LIG1-215ENST00000597901 BMP8BP34820 402 aa17.71■□□□□ 0.43
LIG1-215ENST00000597901 ZNF543Q08ER8 600 aa17.71■□□□□ 0.43
LIG1-215ENST00000597901 MUM1L1Q5H9M0 696 aa17.71■□□□□ 0.43
LIG1-215ENST00000597901 RUFY2Q8WXA3 655 aa17.71■□□□□ 0.43
LIG1-215ENST00000597901 FERMT2Q96AC1 680 aa17.71■□□□□ 0.43
LIG1-215ENST00000597901 ZSCAN10Q96SZ4 725 aaPredicted RBP17.71■□□□□ 0.43
LIG1-215ENST00000597901 ABHD16BQ9H3Z7 469 aa17.71■□□□□ 0.43
LIG1-215ENST00000597901 ZHX1Q9UKY1 873 aaPredicted RBP17.71■□□□□ 0.43
LIG1-215ENST00000597901 CCPG1Q9ULG6 757 aa17.71■□□□□ 0.43
LIG1-215ENST00000597901 COL11A1P12107 1806 aaPredicted RBP17.7■□□□□ 0.42
LIG1-215ENST00000597901 ARMCX2Q7L311 632 aa17.7■□□□□ 0.42
LIG1-215ENST00000597901 RNF180Q86T96 592 aa17.7■□□□□ 0.42
LIG1-215ENST00000597901 CCDC144CPQ8IYA2 1237 aa17.7■□□□□ 0.42
LIG1-215ENST00000597901 KRT23Q9C075 422 aa17.7■□□□□ 0.42
LIG1-215ENST00000597901 MYH4Q9Y623 1939 aa17.7■□□□□ 0.42
LIG1-215ENST00000597901 MAGEA10P43363 369 aaPredicted RBP17.69■□□□□ 0.42
LIG1-215ENST00000597901 RTP1P59025 263 aa17.69■□□□□ 0.42
LIG1-215ENST00000597901 PTH1RQ03431 593 aa17.69■□□□□ 0.42
LIG1-215ENST00000597901 LENG1Q96BZ8 264 aaPredicted RBP17.69■□□□□ 0.42
LIG1-215ENST00000597901 CNNM2Q9H8M5 875 aa17.69■□□□□ 0.42
LIG1-215ENST00000597901 CYP39A1Q9NYL5 469 aa17.69■□□□□ 0.42
LIG1-215ENST00000597901 PHF24Q9UPV7 400 aa17.69■□□□□ 0.42
LIG1-215ENST00000597901 ASB14A6NK59 587 aa17.68■□□□□ 0.42
LIG1-215ENST00000597901 ADAMTS4O75173 837 aa17.68■□□□□ 0.42
LIG1-215ENST00000597901 DUSP11O75319 330 aaKnown RBP17.68■□□□□ 0.42
LIG1-215ENST00000597901 GOLGA8HP0CJ92 632 aa17.68■□□□□ 0.42
LIG1-215ENST00000597901 CCDC144BQ3MJ40 725 aa17.68■□□□□ 0.42
LIG1-215ENST00000597901 GPATCH4Q5T3I0 446 aaKnown RBP17.68■□□□□ 0.42
LIG1-215ENST00000597901 NSMFQ6X4W1 530 aa17.68■□□□□ 0.42
LIG1-215ENST00000597901 PNMA1Q8ND90 353 aa17.68■□□□□ 0.42
LIG1-215ENST00000597901 KLHDC9Q8NEP7 349 aa17.68■□□□□ 0.42
LIG1-215ENST00000597901 UBA5Q9GZZ9 404 aa17.68■□□□□ 0.42
LIG1-215ENST00000597901 KATNBL1Q9H079 304 aa17.68■□□□□ 0.42
LIG1-215ENST00000597901 KAT14Q9H8E8 782 aa17.68■□□□□ 0.42
LIG1-215ENST00000597901 ZNFX1Q9P2E3 1918 aaKnown RBP17.68■□□□□ 0.42
LIG1-215ENST00000597901 RAD50Q92878 1312 aa17.68■□□□□ 0.42
LIG1-215ENST00000597901 CEP290O15078 2479 aa17.67■□□□□ 0.42
LIG1-215ENST00000597901 BAATQ14032 418 aaPredicted RBP17.67■□□□□ 0.42
LIG1-215ENST00000597901 ENAHQ8N8S7 591 aaPredicted RBP17.67■□□□□ 0.42
LIG1-215ENST00000597901 PURBQ96QR8 312 aaKnown RBP17.67■□□□□ 0.42
LIG1-215ENST00000597901 TSEN34Q9BSV6 310 aaKnown RBP17.67■□□□□ 0.42
LIG1-215ENST00000597901 PNMA2Q9UL42 364 aa17.67■□□□□ 0.42
LIG1-215ENST00000597901 ATP11BQ9Y2G3 1177 aa17.67■□□□□ 0.42
LIG1-215ENST00000597901 SGSM2O43147 1006 aa17.66■□□□□ 0.42
LIG1-215ENST00000597901 SNX17Q15036 470 aa17.66■□□□□ 0.42
LIG1-215ENST00000597901 C1orf53Q5VUE5 145 aa17.66■□□□□ 0.42
LIG1-215ENST00000597901 CLEC4DQ8WXI8 215 aa17.66■□□□□ 0.42
LIG1-215ENST00000597901 CPVLQ9H3G5 476 aa17.66■□□□□ 0.42
LIG1-215ENST00000597901 U3KPZ7 1027 aaPredicted RBP17.66■□□□□ 0.42
LIG1-215ENST00000597901 NFIBO00712 420 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms