RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 PI4K2BG5E9Z4 385 aa11.05□□□□□ -0.64
TRIM28-208ENST00000597172 GDF11O95390 407 aa11.05□□□□□ -0.64
TRIM28-208ENST00000597172 LIFRP42702 1097 aa11.05□□□□□ -0.64
TRIM28-208ENST00000597172 APOBRQ0VD83 1088 aa11.05□□□□□ -0.64
TRIM28-208ENST00000597172 ABCB5Q2M3G0 1257 aa11.05□□□□□ -0.64
TRIM28-208ENST00000597172 TMEM67Q5HYA8 995 aa11.05□□□□□ -0.64
TRIM28-208ENST00000597172 NOL8Q76FK4 1167 aaKnown RBP11.05□□□□□ -0.64
TRIM28-208ENST00000597172 IQCA1Q86XH1 822 aa11.05□□□□□ -0.64
TRIM28-208ENST00000597172 SIAH1Q8IUQ4 282 aa11.05□□□□□ -0.64
TRIM28-208ENST00000597172 CEP95Q96GE4 821 aa11.05□□□□□ -0.64
TRIM28-208ENST00000597172 MTMR4Q9NYA4 1195 aa11.05□□□□□ -0.64
TRIM28-208ENST00000597172 ZHX2Q9Y6X8 837 aa11.05□□□□□ -0.64
TRIM28-208ENST00000597172 CACNA1HO95180 2353 aa11.05□□□□□ -0.64
TRIM28-208ENST00000597172 TNKSO95271 1327 aa11.05□□□□□ -0.64
TRIM28-208ENST00000597172 PLIN4Q96Q06 1357 aa11.04□□□□□ -0.64
TRIM28-208ENST00000597172 CHD9Q3L8U1 2897 aa11.04□□□□□ -0.64
TRIM28-208ENST00000597172 MPHOSPH10O00566 681 aaKnown RBP11.04□□□□□ -0.64
TRIM28-208ENST00000597172 CTNND1O60716 968 aaKnown RBP11.04□□□□□ -0.64
TRIM28-208ENST00000597172 LARGE1O95461 756 aa11.04□□□□□ -0.64
TRIM28-208ENST00000597172 GH2P01242 217 aa11.04□□□□□ -0.64
TRIM28-208ENST00000597172 XRCC5P13010 732 aaKnown RBP11.04□□□□□ -0.64
TRIM28-208ENST00000597172 CAP2P40123 477 aa11.04□□□□□ -0.64
TRIM28-208ENST00000597172 EPHB4P54760 987 aa11.04□□□□□ -0.64
TRIM28-208ENST00000597172 WTAPQ15007 396 aa11.04□□□□□ -0.64
TRIM28-208ENST00000597172 SEPT2Q15019 361 aa11.04□□□□□ -0.64
TRIM28-208ENST00000597172 ANKRD1Q15327 319 aa11.04□□□□□ -0.64
TRIM28-208ENST00000597172 ME3Q16798 604 aa11.04□□□□□ -0.64
TRIM28-208ENST00000597172 SGMS1Q86VZ5 419 aa11.04□□□□□ -0.64
TRIM28-208ENST00000597172 DGKHQ86XP1 1220 aa11.04□□□□□ -0.64
TRIM28-208ENST00000597172 TRMT44Q8IYL2 757 aaKnown RBP11.04□□□□□ -0.64
TRIM28-208ENST00000597172 FBXL18Q96ME1 805 aa11.04□□□□□ -0.64
TRIM28-208ENST00000597172 UIMC1Q96RL1 719 aa11.04□□□□□ -0.64
TRIM28-208ENST00000597172 UBAC1Q9BSL1 405 aa11.04□□□□□ -0.64
TRIM28-208ENST00000597172 LIMCH1Q9UPQ0 1083 aa11.04□□□□□ -0.64
TRIM28-208ENST00000597172 WDFY4Q6ZS81 3184 aa11.04□□□□□ -0.64
TRIM28-208ENST00000597172 BAHCC1Q9P281 2608 aa11.03□□□□□ -0.64
TRIM28-208ENST00000597172 TRIM43BA6NCK2 446 aa11.03□□□□□ -0.64
TRIM28-208ENST00000597172 PDIA3P30101 505 aaKnown RBP11.03□□□□□ -0.64
TRIM28-208ENST00000597172 ANP32AP39687 249 aaKnown RBP11.03□□□□□ -0.64
TRIM28-208ENST00000597172 MCM2P49736 904 aa11.03□□□□□ -0.64
TRIM28-208ENST00000597172 FGD1P98174 961 aa11.03□□□□□ -0.64
TRIM28-208ENST00000597172 SART3Q15020 963 aaKnown RBP11.03□□□□□ -0.64
TRIM28-208ENST00000597172 CCDC178Q5BJE1 867 aa11.03□□□□□ -0.64
TRIM28-208ENST00000597172 TMEM179Q6ZVK1 233 aa11.03□□□□□ -0.64
TRIM28-208ENST00000597172 SH3RF1Q7Z6J0 888 aa11.03□□□□□ -0.64
TRIM28-208ENST00000597172 CLEC10AQ8IUN9 316 aa11.03□□□□□ -0.64
TRIM28-208ENST00000597172 TMTC2Q8N394 836 aa11.03□□□□□ -0.64
TRIM28-208ENST00000597172 MKL1Q969V6 931 aa11.03□□□□□ -0.64
TRIM28-208ENST00000597172 TRIM43Q96BQ3 446 aaPredicted RBP11.03□□□□□ -0.64
TRIM28-208ENST00000597172 ZNF274Q96GC6 653 aaPredicted RBP11.03□□□□□ -0.64
TRIM28-208ENST00000597172 TMX3Q96JJ7 454 aa11.03□□□□□ -0.64
TRIM28-208ENST00000597172 TMEM47Q9BQJ4 181 aa11.03□□□□□ -0.64
TRIM28-208ENST00000597172 PDLIM7Q9NR12 457 aa11.03□□□□□ -0.64
TRIM28-208ENST00000597172 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.03□□□□□ -0.64
TRIM28-208ENST00000597172 PNMA3Q9UL41 463 aa11.03□□□□□ -0.64
TRIM28-208ENST00000597172 ZNF318Q5VUA4 2279 aa11.02□□□□□ -0.64
TRIM28-208ENST00000597172 KLF18A0A0U1RQI7 1052 aa11.02□□□□□ -0.65
TRIM28-208ENST00000597172 ERICH2A1L162 156 aa11.02□□□□□ -0.65
TRIM28-208ENST00000597172 K7ELQ4 463 aaPredicted RBP11.02□□□□□ -0.65
TRIM28-208ENST00000597172 EEF2P13639 858 aaKnown RBP11.02□□□□□ -0.65
TRIM28-208ENST00000597172 GCLCP48506 637 aaPredicted RBP11.02□□□□□ -0.65
TRIM28-208ENST00000597172 SLC4A3P48751 1232 aa11.02□□□□□ -0.65
TRIM28-208ENST00000597172 ST3GAL1Q11201 340 aa11.02□□□□□ -0.65
TRIM28-208ENST00000597172 IFIT1BQ5T764 474 aaKnown RBP11.02□□□□□ -0.65
TRIM28-208ENST00000597172 SLC39A5Q6ZMH5 540 aa11.02□□□□□ -0.65
TRIM28-208ENST00000597172 ZSCAN31Q96LW9 406 aaPredicted RBP11.02□□□□□ -0.65
TRIM28-208ENST00000597172 NUDT12Q9BQG2 462 aa11.02□□□□□ -0.65
TRIM28-208ENST00000597172 KCNH6Q9H252 994 aa11.02□□□□□ -0.65
TRIM28-208ENST00000597172 KANSL2Q9H9L4 492 aa11.02□□□□□ -0.65
TRIM28-208ENST00000597172 CABP5Q9NP86 173 aa11.02□□□□□ -0.65
TRIM28-208ENST00000597172 PICK1Q9NRD5 415 aa11.02□□□□□ -0.65
TRIM28-208ENST00000597172 NYAP2Q9P242 653 aa11.02□□□□□ -0.65
TRIM28-208ENST00000597172 CLIP2Q9UDT6 1046 aa11.02□□□□□ -0.65
TRIM28-208ENST00000597172 ZBTB21Q9ULJ3 1066 aa11.02□□□□□ -0.65
TRIM28-208ENST00000597172 AFG3L2Q9Y4W6 797 aa11.02□□□□□ -0.65
TRIM28-208ENST00000597172 FAM186AA6NE01 2351 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 A0A1W2PRG0 241 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 CCDC69A6NI79 296 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 DNM1LO00429 736 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 TLL1O43897 1013 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 PFKFB2O60825 505 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 TTLL1O95922 423 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 TOP1P11387 765 aaKnown RBP11.01□□□□□ -0.65
TRIM28-208ENST00000597172 PBX2P40425 430 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 TROAPQ12815 778 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 STK3Q13188 491 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 CUL4AQ13619 759 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 RAB3GAP1Q15042 981 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 SKIV2LQ15477 1246 aaKnown RBP11.01□□□□□ -0.65
TRIM28-208ENST00000597172 TRIM60Q495X7 471 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 APOA5Q6Q788 366 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 NFXL1Q6ZNB6 911 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 CCDC84Q86UT8 332 aaPredicted RBP11.01□□□□□ -0.65
TRIM28-208ENST00000597172 RAB11FIP4Q86YS3 637 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 HSCBQ8IWL3 235 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 MICALL1Q8N3F8 863 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 NECAB1Q8N987 351 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 MYL10Q9BUA6 226 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 FAM217BQ9NTX9 383 aaPredicted RBP11.01□□□□□ -0.65
TRIM28-208ENST00000597172 GINM1Q9NU53 330 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms