RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 CTCFP49711 727 aaPredicted RBP12.32□□□□□ -0.44
LIG1-210ENST00000596332 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.32□□□□□ -0.44
LIG1-210ENST00000596332 MICU3Q86XE3 530 aa12.32□□□□□ -0.44
LIG1-210ENST00000596332 CD99L2Q8TCZ2 262 aa12.32□□□□□ -0.44
LIG1-210ENST00000596332 GTF3C2Q8WUA4 911 aaPredicted RBP12.32□□□□□ -0.44
LIG1-210ENST00000596332 CLEC4DQ8WXI8 215 aa12.32□□□□□ -0.44
LIG1-210ENST00000596332 PIGSQ96S52 555 aa12.32□□□□□ -0.44
LIG1-210ENST00000596332 SPZ1Q9BXG8 430 aa12.32□□□□□ -0.44
LIG1-210ENST00000596332 COL11A1P12107 1806 aaPredicted RBP12.32□□□□□ -0.44
LIG1-210ENST00000596332 CALM1P0DP23 149 aa12.31□□□□□ -0.44
LIG1-210ENST00000596332 CALM2P0DP24 149 aa12.31□□□□□ -0.44
LIG1-210ENST00000596332 CALM3P0DP25 149 aa12.31□□□□□ -0.44
LIG1-210ENST00000596332 FDX1P10109 184 aa12.31□□□□□ -0.44
LIG1-210ENST00000596332 OAZ1P54368 228 aa12.31□□□□□ -0.44
LIG1-210ENST00000596332 SCRN1Q12765 414 aa12.31□□□□□ -0.44
LIG1-210ENST00000596332 RABEP1Q15276 862 aa12.31□□□□□ -0.44
LIG1-210ENST00000596332 PKN1Q16512 942 aa12.31□□□□□ -0.44
LIG1-210ENST00000596332 QRICH1Q2TAL8 776 aa12.31□□□□□ -0.44
LIG1-210ENST00000596332 MORN1Q5T089 497 aa12.31□□□□□ -0.44
LIG1-210ENST00000596332 SAMD1Q6SPF0 538 aaPredicted RBP12.31□□□□□ -0.44
LIG1-210ENST00000596332 SHCBP1Q8NEM2 672 aa12.31□□□□□ -0.44
LIG1-210ENST00000596332 BEGAINQ9BUH8 593 aa12.31□□□□□ -0.44
LIG1-210ENST00000596332 VAT1LQ9HCJ6 419 aa12.31□□□□□ -0.44
LIG1-210ENST00000596332 PLXNB2O15031 1838 aa12.31□□□□□ -0.44
LIG1-210ENST00000596332 HTTP42858 3142 aa12.31□□□□□ -0.44
LIG1-210ENST00000596332 CNTNAP5Q8WYK1 1306 aa12.31□□□□□ -0.44
LIG1-210ENST00000596332 hCG_1642624A0A1W2PR95 340 aa12.3□□□□□ -0.44
LIG1-210ENST00000596332 GOLGA8AA7E2F4 631 aa12.3□□□□□ -0.44
LIG1-210ENST00000596332 GOLGA8BA8MQT2 603 aa12.3□□□□□ -0.44
LIG1-210ENST00000596332 ZBED4O75132 1171 aa12.3□□□□□ -0.44
LIG1-210ENST00000596332 ICAM1P05362 532 aa12.3□□□□□ -0.44
LIG1-210ENST00000596332 ERCC3P19447 782 aa12.3□□□□□ -0.44
LIG1-210ENST00000596332 PSMC4P43686 418 aa12.3□□□□□ -0.44
LIG1-210ENST00000596332 CCT2P78371 535 aaKnown RBP12.3□□□□□ -0.44
LIG1-210ENST00000596332 MUM1L1Q5H9M0 696 aa12.3□□□□□ -0.44
LIG1-210ENST00000596332 CCDC174Q6PII3 467 aa12.3□□□□□ -0.44
LIG1-210ENST00000596332 GPR142Q7Z601 462 aa12.3□□□□□ -0.44
LIG1-210ENST00000596332 CPXCR1Q8N123 301 aa12.3□□□□□ -0.44
LIG1-210ENST00000596332 TBC1D5Q92609 795 aa12.3□□□□□ -0.44
LIG1-210ENST00000596332 PRDM10Q9NQV6 1147 aa12.3□□□□□ -0.44
LIG1-210ENST00000596332 GABRQQ9UN88 632 aa12.3□□□□□ -0.44
LIG1-210ENST00000596332 DNAJC25-GNG10A0A024R161 153 aa12.29□□□□□ -0.44
LIG1-210ENST00000596332 ZBTB5O15062 677 aa12.29□□□□□ -0.44
LIG1-210ENST00000596332 ADAMTS3O15072 1205 aa12.29□□□□□ -0.44
LIG1-210ENST00000596332 COBLO75128 1261 aa12.29□□□□□ -0.44
LIG1-210ENST00000596332 ECM2O94769 699 aaPredicted RBP12.29□□□□□ -0.44
LIG1-210ENST00000596332 FDPSP14324 419 aaKnown RBP12.29□□□□□ -0.44
LIG1-210ENST00000596332 IFNAR1P17181 557 aa12.29□□□□□ -0.44
LIG1-210ENST00000596332 PTPREP23469 700 aa12.29□□□□□ -0.44
LIG1-210ENST00000596332 METAP2P50579 478 aaKnown RBP eCLIP12.29□□□□□ -0.44
LIG1-210ENST00000596332 CDC37Q16543 378 aaPredicted RBP12.29□□□□□ -0.44
LIG1-210ENST00000596332 RTN1Q16799 776 aa12.29□□□□□ -0.44
LIG1-210ENST00000596332 SNRNP48Q6IEG0 339 aaKnown RBP12.29□□□□□ -0.44
LIG1-210ENST00000596332 TYW1BQ6NUM6 668 aa12.29□□□□□ -0.44
LIG1-210ENST00000596332 OTOP1Q7RTM1 612 aa12.29□□□□□ -0.44
LIG1-210ENST00000596332 CCDC82Q8N4S0 544 aa12.29□□□□□ -0.44
LIG1-210ENST00000596332 NECAB1Q8N987 351 aa12.29□□□□□ -0.44
LIG1-210ENST00000596332 CTCFLQ8NI51 663 aaPredicted RBP12.29□□□□□ -0.44
LIG1-210ENST00000596332 FGD4Q96M96 766 aa12.29□□□□□ -0.44
LIG1-210ENST00000596332 LZTS2Q9BRK4 669 aa12.29□□□□□ -0.44
LIG1-210ENST00000596332 TEX13BQ9BXU2 312 aa12.29□□□□□ -0.44
LIG1-210ENST00000596332 BAZ2BQ9UIF8 2168 aaKnown RBP12.28□□□□□ -0.44
LIG1-210ENST00000596332 PNMA6FA0A0J9YX94 578 aa12.28□□□□□ -0.44
LIG1-210ENST00000596332 PPFIA3O75145 1194 aa12.28□□□□□ -0.44
LIG1-210ENST00000596332 KIF5BP33176 963 aa12.28□□□□□ -0.44
LIG1-210ENST00000596332 GNAQP50148 359 aa12.28□□□□□ -0.44
LIG1-210ENST00000596332 IKQ13123 557 aaPredicted RBP12.28□□□□□ -0.44
LIG1-210ENST00000596332 STK3Q13188 491 aa12.28□□□□□ -0.44
LIG1-210ENST00000596332 PPP2R5BQ15173 497 aa12.28□□□□□ -0.44
LIG1-210ENST00000596332 ANKRD1Q15327 319 aa12.28□□□□□ -0.44
LIG1-210ENST00000596332 MROH8Q9H579 483 aa12.28□□□□□ -0.44
LIG1-210ENST00000596332 UPF2Q9HAU5 1272 aaKnown RBP12.28□□□□□ -0.44
LIG1-210ENST00000596332 RBM28Q9NW13 759 aaKnown RBP12.28□□□□□ -0.44
LIG1-210ENST00000596332 LIMCH1Q9UPQ0 1083 aa12.28□□□□□ -0.44
LIG1-210ENST00000596332 V9GY48 417 aaPredicted RBP12.28□□□□□ -0.44
LIG1-210ENST00000596332 CASP8AP2Q9UKL3 1982 aa12.28□□□□□ -0.44
LIG1-210ENST00000596332 ASTN1O14525 1302 aa12.28□□□□□ -0.44
LIG1-210ENST00000596332 DOCK3Q8IZD9 2030 aa12.27□□□□□ -0.44
LIG1-210ENST00000596332 NFIBO00712 420 aa12.27□□□□□ -0.45
LIG1-210ENST00000596332 PRPF3O43395 683 aaKnown RBP12.27□□□□□ -0.45
LIG1-210ENST00000596332 SLC25A27O95847 323 aa12.27□□□□□ -0.45
LIG1-210ENST00000596332 MAPK4P31152 587 aa12.27□□□□□ -0.45
LIG1-210ENST00000596332 FGD1P98174 961 aa12.27□□□□□ -0.45
LIG1-210ENST00000596332 GHRHRQ02643 423 aa12.27□□□□□ -0.45
LIG1-210ENST00000596332 GRB14Q14449 540 aa12.27□□□□□ -0.45
LIG1-210ENST00000596332 PLS1Q14651 629 aa12.27□□□□□ -0.45
LIG1-210ENST00000596332 SYNE3Q6ZMZ3 975 aa12.27□□□□□ -0.45
LIG1-210ENST00000596332 NOL8Q76FK4 1167 aaKnown RBP12.27□□□□□ -0.45
LIG1-210ENST00000596332 PLEKHH3Q7Z736 793 aa12.27□□□□□ -0.45
LIG1-210ENST00000596332 NPLOC4Q8TAT6 608 aa12.27□□□□□ -0.45
LIG1-210ENST00000596332 PHKBQ93100 1093 aa12.27□□□□□ -0.45
LIG1-210ENST00000596332 GTF3C6Q969F1 213 aa12.27□□□□□ -0.45
LIG1-210ENST00000596332 COA7Q96BR5 231 aa12.27□□□□□ -0.45
LIG1-210ENST00000596332 ERO1AQ96HE7 468 aa12.27□□□□□ -0.45
LIG1-210ENST00000596332 TRERF1Q96PN7 1200 aa12.27□□□□□ -0.45
LIG1-210ENST00000596332 PURBQ96QR8 312 aaKnown RBP12.27□□□□□ -0.45
LIG1-210ENST00000596332 SRRDQ9UH36 339 aa12.27□□□□□ -0.45
LIG1-210ENST00000596332 MGAMO43451 1857 aa12.26□□□□□ -0.45
LIG1-210ENST00000596332 HOXC6P09630 235 aa12.26□□□□□ -0.45
LIG1-210ENST00000596332 ALAS1P13196 640 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms