RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 BSDC1Q9NW68 430 aaPredicted RBP13.57□□□□□ -0.24
LIG1-207ENST00000594759 IGSF1Q8N6C5 1336 aa13.57□□□□□ -0.24
LIG1-207ENST00000594759 ARHGEF10O15013 1369 aa13.57□□□□□ -0.24
LIG1-207ENST00000594759 BMP15O95972 392 aa13.57□□□□□ -0.24
LIG1-207ENST00000594759 ATP2A2P16615 1042 aaKnown RBP13.57□□□□□ -0.24
LIG1-207ENST00000594759 UBA7P41226 1012 aa13.57□□□□□ -0.24
LIG1-207ENST00000594759 POLA2Q14181 598 aa13.57□□□□□ -0.24
LIG1-207ENST00000594759 NCAPHQ15003 741 aa13.57□□□□□ -0.24
LIG1-207ENST00000594759 VPS36Q86VN1 386 aa13.57□□□□□ -0.24
LIG1-207ENST00000594759 SMYD4Q8IYR2 804 aaPredicted RBP13.57□□□□□ -0.24
LIG1-207ENST00000594759 CABP5Q9NP86 173 aa13.57□□□□□ -0.24
LIG1-207ENST00000594759 MORC3Q14149 939 aa13.56□□□□□ -0.24
LIG1-207ENST00000594759 ZIM3Q96PE6 472 aa13.56□□□□□ -0.24
LIG1-207ENST00000594759 NOC4LQ9BVI4 516 aaKnown RBP13.56□□□□□ -0.24
LIG1-207ENST00000594759 UTP11Q9Y3A2 253 aaKnown RBP13.56□□□□□ -0.24
LIG1-207ENST00000594759 ESYT3A0FGR9 886 aa13.56□□□□□ -0.24
LIG1-207ENST00000594759 ZNF185O15231 689 aa13.56□□□□□ -0.24
LIG1-207ENST00000594759 STAT6P42226 847 aa13.56□□□□□ -0.24
LIG1-207ENST00000594759 SCTRP47872 440 aa13.56□□□□□ -0.24
LIG1-207ENST00000594759 C2CD5Q86YS7 1000 aa13.56□□□□□ -0.24
LIG1-207ENST00000594759 DIS3L2Q8IYB7 885 aaKnown RBP13.56□□□□□ -0.24
LIG1-207ENST00000594759 FGD4Q96M96 766 aa13.56□□□□□ -0.24
LIG1-207ENST00000594759 LRP2BPQ9P2M1 347 aa13.56□□□□□ -0.24
LIG1-207ENST00000594759 TRIM37O94972 964 aa13.56□□□□□ -0.24
LIG1-207ENST00000594759 ICA1Q05084 483 aa13.56□□□□□ -0.24
LIG1-207ENST00000594759 TAOK1Q7L7X3 1001 aa13.56□□□□□ -0.24
LIG1-207ENST00000594759 ITFG2Q969R8 447 aa13.56□□□□□ -0.24
LIG1-207ENST00000594759 SALL3Q9BXA9 1300 aa13.56□□□□□ -0.24
LIG1-207ENST00000594759 GPHNQ9NQX3 736 aaPredicted RBP13.56□□□□□ -0.24
LIG1-207ENST00000594759 SEPT11Q9NVA2 429 aaKnown RBP13.56□□□□□ -0.24
LIG1-207ENST00000594759 IQSEC3Q9UPP2 1182 aaPredicted RBP13.56□□□□□ -0.24
LIG1-207ENST00000594759 KLHL33A6NCF5 533 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 BUB1O43683 1085 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 MYBL1P10243 752 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 CDC25CP30307 473 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 SNX1Q13596 522 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 DIXDC1Q155Q3 683 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 PPP4R3AQ6IN85 833 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 HELBQ8NG08 1087 aaPredicted RBP13.55□□□□□ -0.24
LIG1-207ENST00000594759 DTNBP1Q96EV8 351 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 CNOT10Q9H9A5 744 aaKnown RBP13.55□□□□□ -0.24
LIG1-207ENST00000594759 SLC52A2Q9HAB3 445 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 PLCB1Q9NQ66 1216 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 RGL1Q9NZL6 768 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 LARSQ9P2J5 1176 aaKnown RBP13.55□□□□□ -0.24
LIG1-207ENST00000594759 LRRC7Q96NW7 1537 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 CPSF1Q10570 1443 aaKnown RBP13.55□□□□□ -0.24
LIG1-207ENST00000594759 ANO9A1A5B4 782 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 ATP5JP18859 108 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 TIMM10P62072 90 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 KIF23Q02241 960 aaPredicted RBP13.55□□□□□ -0.24
LIG1-207ENST00000594759 ZBTB16Q05516 673 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 GLE1Q53GS7 698 aaKnown RBP13.55□□□□□ -0.24
LIG1-207ENST00000594759 CCDC25Q86WR0 208 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 KBTBD3Q8NAB2 608 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 FAM89AQ96GI7 184 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 MYL10Q9BUA6 226 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 RNF113AO15541 343 aaKnown RBP13.55□□□□□ -0.24
LIG1-207ENST00000594759 SKIP12755 728 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 TNNI3KQ59H18 835 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 SPATA4Q8NEY3 305 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 NKIRAS1Q9NYS0 192 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 ZFATQ9P243 1243 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 FPGT-TNNI3KV9GXZ4 949 aa13.55□□□□□ -0.24
LIG1-207ENST00000594759 RASSF2P50749 326 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 AIFM3Q96NN9 605 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 MTRF1LQ9UGC7 380 aaKnown RBP13.54□□□□□ -0.24
LIG1-207ENST00000594759 LMTK2Q8IWU2 1503 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 CCND1P24385 295 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 PPP2R2AP63151 447 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 ACBD5Q5T8D3 534 aaPredicted RBP13.54□□□□□ -0.24
LIG1-207ENST00000594759 YTHDF3Q7Z739 585 aaKnown RBP13.54□□□□□ -0.24
LIG1-207ENST00000594759 CSGALNACT2Q8N6G5 542 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 RRP36Q96EU6 259 aaKnown RBP13.54□□□□□ -0.24
LIG1-207ENST00000594759 NAPBQ9H115 298 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 BLZF1Q9H2G9 400 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 TRIM10Q9UDY6 481 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 KCNJ14Q9UNX9 436 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 AXIN2Q9Y2T1 843 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 L3MBTL1Q9Y468 752 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 PHF20L1A8MW92 1017 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 FOXN1O15353 648 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 KRT13P13646 458 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 BIRC3Q13489 604 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 ARMC3Q5W041 872 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 CCDC174Q6PII3 467 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 KDM7AQ6ZMT4 941 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 ARHGAP22Q7Z5H3 698 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 KLHL23Q8NBE8 558 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 CHMP6Q96FZ7 201 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 C8orf37Q96NL8 207 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 HELLSQ9NRZ9 838 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 AATFQ9NY61 560 aaKnown RBP eCLIP13.54□□□□□ -0.24
LIG1-207ENST00000594759 RASAL2Q9UJF2 1139 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 SH3BP1Q9Y3L3 701 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 ATP6V1G2O95670 118 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 IGHMBP2P38935 993 aaKnown RBP13.54□□□□□ -0.24
LIG1-207ENST00000594759 RPS6KA1Q15418 735 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 DENND2CQ68D51 928 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 LONP2Q86WA8 852 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms