RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 ZBTB5O15062 677 aa11.02□□□□□ -0.65
LIG3-216ENST00000593099 CA8P35219 290 aa11.02□□□□□ -0.65
LIG3-216ENST00000593099 RCAN1P53805 252 aa11.02□□□□□ -0.65
LIG3-216ENST00000593099 UBXN2AP68543 259 aa11.02□□□□□ -0.65
LIG3-216ENST00000593099 UTP14CQ5TAP6 766 aaKnown RBP11.02□□□□□ -0.65
LIG3-216ENST00000593099 SEPT14Q6ZU15 432 aa11.02□□□□□ -0.65
LIG3-216ENST00000593099 NRBP2Q9NSY0 501 aa11.02□□□□□ -0.65
LIG3-216ENST00000593099 USP25Q9UHP3 1055 aa11.02□□□□□ -0.65
LIG3-216ENST00000593099 ANKRD26Q9UPS8 1709 aa11.02□□□□□ -0.65
LIG3-216ENST00000593099 CTNND1O60716 968 aaKnown RBP11.02□□□□□ -0.65
LIG3-216ENST00000593099 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.02□□□□□ -0.65
LIG3-216ENST00000593099 CYB5R4Q7L1T6 521 aa11.02□□□□□ -0.65
LIG3-216ENST00000593099 MB21D2Q8IYB1 491 aaPredicted RBP11.02□□□□□ -0.65
LIG3-216ENST00000593099 LEO1Q8WVC0 666 aaPredicted RBP11.02□□□□□ -0.65
LIG3-216ENST00000593099 RAVER2Q9HCJ3 691 aaKnown RBP11.02□□□□□ -0.65
LIG3-216ENST00000593099 RTEL1Q9NZ71 1219 aa11.02□□□□□ -0.65
LIG3-216ENST00000593099 NMT2O60551 498 aa11.02□□□□□ -0.65
LIG3-216ENST00000593099 FOXP1Q9H334 677 aaPredicted RBP11.02□□□□□ -0.65
LIG3-216ENST00000593099 RNF146Q9NTX7 359 aa11.02□□□□□ -0.65
LIG3-216ENST00000593099 POLR2DO15514 142 aaKnown RBP11.01□□□□□ -0.65
LIG3-216ENST00000593099 MTMR2Q13614 643 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 MAEAQ7L5Y9 396 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 FAM43AQ8N2R8 423 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 NUP88Q99567 741 aaPredicted RBP11.01□□□□□ -0.65
LIG3-216ENST00000593099 RPAP3Q9H6T3 665 aaPredicted RBP11.01□□□□□ -0.65
LIG3-216ENST00000593099 NYAP2Q9P242 653 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 PPP2R3BQ9Y5P8 575 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 ZEB2O60315 1214 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 HARSP12081 509 aaKnown RBP11.01□□□□□ -0.65
LIG3-216ENST00000593099 SFPQP23246 707 aaKnown RBP eCLIP11.01□□□□□ -0.65
LIG3-216ENST00000593099 STAT3P40763 770 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 ENOX2Q16206 610 aaKnown RBP11.01□□□□□ -0.65
LIG3-216ENST00000593099 TDRD12Q587J7 1177 aaKnown RBP11.01□□□□□ -0.65
LIG3-216ENST00000593099 HERC4Q5GLZ8 1057 aaPredicted RBP11.01□□□□□ -0.65
LIG3-216ENST00000593099 CAGE1Q8TC20 777 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 NBPF3Q9H094 633 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 MTMR4Q9NYA4 1195 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 SCAF8Q9UPN6 1271 aaKnown RBP11.01□□□□□ -0.65
LIG3-216ENST00000593099 PDS5AQ29RF7 1337 aaKnown RBP11.01□□□□□ -0.65
LIG3-216ENST00000593099 PLEKHA8P1O95397 391 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 SNAP25P60880 206 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 COG2Q14746 738 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 SPA17Q15506 151 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 CRY2Q49AN0 593 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 LRCH2Q5VUJ6 765 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 CNNM4Q6P4Q7 775 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 C16orf86Q6ZW13 317 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 WDR11Q9BZH6 1224 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 TRIM6Q9C030 488 aaPredicted RBP11.01□□□□□ -0.65
LIG3-216ENST00000593099 RRAGCQ9HB90 399 aa11.01□□□□□ -0.65
LIG3-216ENST00000593099 PUF60Q9UHX1 559 aaKnown RBP11.01□□□□□ -0.65
LIG3-216ENST00000593099 WDR46O15213 610 aaKnown RBP11□□□□□ -0.65
LIG3-216ENST00000593099 SORBS3O60504 671 aa11□□□□□ -0.65
LIG3-216ENST00000593099 EIF2AK2P19525 551 aaKnown RBP11□□□□□ -0.65
LIG3-216ENST00000593099 ECE1P42892 770 aa11□□□□□ -0.65
LIG3-216ENST00000593099 GRM4Q14833 912 aa11□□□□□ -0.65
LIG3-216ENST00000593099 SPECC1Q5M775 1068 aa11□□□□□ -0.65
LIG3-216ENST00000593099 RASGRP4Q8TDF6 673 aa11□□□□□ -0.65
LIG3-216ENST00000593099 ZNF577Q9BSK1 485 aa11□□□□□ -0.65
LIG3-216ENST00000593099 CETPP11597 493 aa11□□□□□ -0.65
LIG3-216ENST00000593099 TECP42680 631 aa11□□□□□ -0.65
LIG3-216ENST00000593099 XKR9Q5GH70 373 aa11□□□□□ -0.65
LIG3-216ENST00000593099 EEPD1Q7L9B9 569 aa11□□□□□ -0.65
LIG3-216ENST00000593099 METTL13Q8N6R0 699 aa11□□□□□ -0.65
LIG3-216ENST00000593099 ATP6V0A1Q93050 837 aa11□□□□□ -0.65
LIG3-216ENST00000593099 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11□□□□□ -0.651e-12■■■■■ 236
LIG3-216ENST00000593099 TNNT1P13805 278 aa11□□□□□ -0.65
LIG3-216ENST00000593099 TMOD1P28289 359 aa11□□□□□ -0.65
LIG3-216ENST00000593099 DACT2Q5SW24 774 aa11□□□□□ -0.65
LIG3-216ENST00000593099 KIAA1328Q86T90 577 aa11□□□□□ -0.65
LIG3-216ENST00000593099 TBCKQ8TEA7 893 aa11□□□□□ -0.65
LIG3-216ENST00000593099 CTAGE1Q96RT6 745 aa11□□□□□ -0.65
LIG3-216ENST00000593099 PARK7Q99497 189 aaKnown RBP11□□□□□ -0.65
LIG3-216ENST00000593099 GBA2Q9HCG7 927 aaPredicted RBP11□□□□□ -0.65
LIG3-216ENST00000593099 ABCB11O95342 1321 aa11□□□□□ -0.65
LIG3-216ENST00000593099 CCDC172P0C7W6 258 aa11□□□□□ -0.65
LIG3-216ENST00000593099 NBPF9Q3BBW0 867 aa11□□□□□ -0.65
LIG3-216ENST00000593099 MYCT1Q8N699 235 aa11□□□□□ -0.65
LIG3-216ENST00000593099 SPAG5Q96R06 1193 aa11□□□□□ -0.65
LIG3-216ENST00000593099 MTMR6Q9Y217 621 aa11□□□□□ -0.65
LIG3-216ENST00000593099 SALL1Q9NSC2 1324 aa11□□□□□ -0.65
LIG3-216ENST00000593099 CCL15-CCL14A0A0B4J2E2 113 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 UBE2Q2LH0YL09 131 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 BRD1O95696 1058 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 FKBP1AP62942 108 aaKnown RBP10.99□□□□□ -0.65
LIG3-216ENST00000593099 CCL15Q16663 113 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 HACE1Q8IYU2 909 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 MNS1Q8NEH6 495 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 TRERF1Q96PN7 1200 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 LTN1O94822 1766 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 AP3B2Q13367 1082 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 C15orf52Q6ZUT6 534 aaKnown RBP10.99□□□□□ -0.65
LIG3-216ENST00000593099 GPATCH11Q8N954 259 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 VCPKMTQ9H867 229 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 LY9Q9HBG7 655 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 ZFYVE28Q9HCC9 887 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 LAD1O00515 517 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 HOXA13P31271 388 aaPredicted RBP10.99□□□□□ -0.65
LIG3-216ENST00000593099 SREBF2Q12772 1141 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 NFIAQ12857 509 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms