RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 ANP32CO43423 234 aa13.29□□□□□ -0.28
ZNF540-209ENST00000590588 ZEB2O60315 1214 aa13.29□□□□□ -0.28
ZNF540-209ENST00000590588 B4GALT4O60513 344 aa13.29□□□□□ -0.28
ZNF540-209ENST00000590588 TAP1Q03518 808 aa13.29□□□□□ -0.28
ZNF540-209ENST00000590588 GRB10Q13322 594 aa13.29□□□□□ -0.28
ZNF540-209ENST00000590588 FAM178BQ8IXR5 827 aa13.29□□□□□ -0.28
ZNF540-209ENST00000590588 VWCEQ96DN2 955 aa13.29□□□□□ -0.28
ZNF540-209ENST00000590588 FBXL18Q96ME1 805 aa13.29□□□□□ -0.28
ZNF540-209ENST00000590588 AGBL1Q96MI9 1066 aa13.29□□□□□ -0.28
ZNF540-209ENST00000590588 SLC9A7Q96T83 725 aa13.29□□□□□ -0.28
ZNF540-209ENST00000590588 TRPV6Q9H1D0 765 aa13.29□□□□□ -0.28
ZNF540-209ENST00000590588 GOPCQ9HD26 462 aa13.29□□□□□ -0.28
ZNF540-209ENST00000590588 AKR1B1P15121 316 aa13.28□□□□□ -0.28
ZNF540-209ENST00000590588 TNFAIP2Q03169 654 aa13.28□□□□□ -0.28
ZNF540-209ENST00000590588 EVX2Q03828 476 aa13.28□□□□□ -0.28
ZNF540-209ENST00000590588 SLFN5Q08AF3 891 aa13.28□□□□□ -0.28
ZNF540-209ENST00000590588 OS9Q13438 667 aaPredicted RBP13.28□□□□□ -0.28
ZNF540-209ENST00000590588 SNRNP48Q6IEG0 339 aaKnown RBP13.28□□□□□ -0.28
ZNF540-209ENST00000590588 NOL8Q76FK4 1167 aaKnown RBP13.28□□□□□ -0.28
ZNF540-209ENST00000590588 ARMCX2Q7L311 632 aa13.28□□□□□ -0.28
ZNF540-209ENST00000590588 CLEC10AQ8IUN9 316 aa13.28□□□□□ -0.28
ZNF540-209ENST00000590588 ANKRD35Q8N283 1001 aa13.28□□□□□ -0.28
ZNF540-209ENST00000590588 RIPK3Q9Y572 518 aa13.28□□□□□ -0.28
ZNF540-209ENST00000590588 GRIN2DO15399 1336 aa13.28□□□□□ -0.28
ZNF540-209ENST00000590588 MYO5AQ9Y4I1 1855 aaKnown RBP13.27□□□□□ -0.28
ZNF540-209ENST00000590588 RAD21O60216 631 aa13.27□□□□□ -0.29
ZNF540-209ENST00000590588 CT47B1P0C2W7 299 aaPredicted RBP13.27□□□□□ -0.29
ZNF540-209ENST00000590588 SUPT20HL2P0C7V6 817 aa13.27□□□□□ -0.29
ZNF540-209ENST00000590588 EEF2P13639 858 aaKnown RBP13.27□□□□□ -0.29
ZNF540-209ENST00000590588 SSTR3P32745 418 aaPredicted RBP13.27□□□□□ -0.29
ZNF540-209ENST00000590588 SLC4A3P48751 1232 aa13.27□□□□□ -0.29
ZNF540-209ENST00000590588 FSCN1Q16658 493 aaKnown RBP13.27□□□□□ -0.29
ZNF540-209ENST00000590588 FAM83BQ5T0W9 1011 aa13.27□□□□□ -0.29
ZNF540-209ENST00000590588 DEFB128Q7Z7B8 93 aa13.27□□□□□ -0.29
ZNF540-209ENST00000590588 ARHGAP45Q92619 1136 aa13.27□□□□□ -0.29
ZNF540-209ENST00000590588 DYNLL2Q96FJ2 89 aa13.27□□□□□ -0.29
ZNF540-209ENST00000590588 SLF1Q9BQI6 1058 aa13.27□□□□□ -0.29
ZNF540-209ENST00000590588 ANTXR1Q9H6X2 564 aa13.27□□□□□ -0.29
ZNF540-209ENST00000590588 KANSL2Q9H9L4 492 aa13.27□□□□□ -0.29
ZNF540-209ENST00000590588 DCP1AQ9NPI6 582 aaPredicted RBP13.27□□□□□ -0.29
ZNF540-209ENST00000590588 DBNLQ9UJU6 430 aaKnown RBP13.27□□□□□ -0.29
ZNF540-209ENST00000590588 WDFY4Q6ZS81 3184 aa13.27□□□□□ -0.29
ZNF540-209ENST00000590588 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.26□□□□□ -0.29
ZNF540-209ENST00000590588 ATP2A1O14983 1001 aa13.26□□□□□ -0.29
ZNF540-209ENST00000590588 LPXNO60711 386 aa13.26□□□□□ -0.29
ZNF540-209ENST00000590588 COL11A1P12107 1806 aaPredicted RBP13.26□□□□□ -0.29
ZNF540-209ENST00000590588 LEXMQ3ZCV2 418 aa13.26□□□□□ -0.29
ZNF540-209ENST00000590588 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.26□□□□□ -0.29
ZNF540-209ENST00000590588 CCDC144CPQ8IYA2 1237 aa13.26□□□□□ -0.29
ZNF540-209ENST00000590588 PRPF38AQ8NAV1 312 aaKnown RBP13.26□□□□□ -0.29
ZNF540-209ENST00000590588 SDR42E1Q8WUS8 393 aa13.26□□□□□ -0.29
ZNF540-209ENST00000590588 KATNBL1Q9H079 304 aa13.26□□□□□ -0.29
ZNF540-209ENST00000590588 AP5M1Q9H0R1 490 aa13.26□□□□□ -0.29
ZNF540-209ENST00000590588 CCDC8Q9H0W5 538 aaPredicted RBP13.26□□□□□ -0.29
ZNF540-209ENST00000590588 FBXO40Q9UH90 709 aa13.26□□□□□ -0.29
ZNF540-209ENST00000590588 GNEQ9Y223 722 aaKnown RBP13.26□□□□□ -0.29
ZNF540-209ENST00000590588 CTDP1Q9Y5B0 961 aaPredicted RBP13.26□□□□□ -0.29
ZNF540-209ENST00000590588 ASTN1O14525 1302 aa13.25□□□□□ -0.29
ZNF540-209ENST00000590588 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.25□□□□□ -0.29
ZNF540-209ENST00000590588 DYNC1LI2O43237 492 aaPredicted RBP13.25□□□□□ -0.29
ZNF540-209ENST00000590588 ZBED4O75132 1171 aa13.25□□□□□ -0.29
ZNF540-209ENST00000590588 ARHGEF15O94989 841 aa13.25□□□□□ -0.29
ZNF540-209ENST00000590588 CYP2D6P10635 497 aa13.25□□□□□ -0.29
ZNF540-209ENST00000590588 RFC2P35250 354 aa13.25□□□□□ -0.29
ZNF540-209ENST00000590588 TLK2Q86UE8 772 aa13.25□□□□□ -0.29
ZNF540-209ENST00000590588 HERC6Q8IVU3 1022 aa13.25□□□□□ -0.29
ZNF540-209ENST00000590588 CPXCR1Q8N123 301 aa13.25□□□□□ -0.29
ZNF540-209ENST00000590588 FGD4Q96M96 766 aa13.25□□□□□ -0.29
ZNF540-209ENST00000590588 ALDH8A1Q9H2A2 487 aaPredicted RBP13.25□□□□□ -0.29
ZNF540-209ENST00000590588 UBE2ZQ9H832 354 aaPredicted RBP13.25□□□□□ -0.29
ZNF540-209ENST00000590588 DCXO43602 365 aa13.24□□□□□ -0.29
ZNF540-209ENST00000590588 SURF6O75683 361 aaKnown RBP13.24□□□□□ -0.29
ZNF540-209ENST00000590588 CDK8P49336 464 aa13.24□□□□□ -0.29
ZNF540-209ENST00000590588 PSMC6P62333 389 aa13.24□□□□□ -0.29
ZNF540-209ENST00000590588 TTF1Q15361 905 aaPredicted RBP13.24□□□□□ -0.29
ZNF540-209ENST00000590588 SLC9C2Q5TAH2 1124 aa13.24□□□□□ -0.29
ZNF540-209ENST00000590588 CHST13Q8NET6 341 aa13.24□□□□□ -0.29
ZNF540-209ENST00000590588 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.24□□□□□ -0.29
ZNF540-209ENST00000590588 TLR7Q9NYK1 1049 aaKnown RBP13.24□□□□□ -0.29
ZNF540-209ENST00000590588 Q9Y3F1 56 aa13.24□□□□□ -0.29
ZNF540-209ENST00000590588 PARP14Q460N5 1801 aa13.24□□□□□ -0.29
ZNF540-209ENST00000590588 ZNF536O15090 1300 aa13.23□□□□□ -0.29
ZNF540-209ENST00000590588 POTEB3A0JP26 581 aa13.23□□□□□ -0.29
ZNF540-209ENST00000590588 CYP2C9P11712 490 aa13.23□□□□□ -0.29
ZNF540-209ENST00000590588 IL9P15248 144 aa13.23□□□□□ -0.29
ZNF540-209ENST00000590588 POLA2Q14181 598 aa13.23□□□□□ -0.29
ZNF540-209ENST00000590588 PUS10Q3MIT2 529 aaKnown RBP13.23□□□□□ -0.29
ZNF540-209ENST00000590588 IQSEC1Q6DN90 963 aa13.23□□□□□ -0.29
ZNF540-209ENST00000590588 POTEBQ6S5H4 581 aa13.23□□□□□ -0.29
ZNF540-209ENST00000590588 AMOTL1Q8IY63 956 aa13.23□□□□□ -0.29
ZNF540-209ENST00000590588 EAF2Q96CJ1 260 aaPredicted RBP13.23□□□□□ -0.29
ZNF540-209ENST00000590588 FTOQ9C0B1 505 aaKnown RBP eCLIP13.23□□□□□ -0.29
ZNF540-209ENST00000590588 ATP8A2Q9NTI2 1148 aa13.23□□□□□ -0.29
ZNF540-209ENST00000590588 TRMT13Q9NUP7 481 aaKnown RBP13.23□□□□□ -0.29
ZNF540-209ENST00000590588 GRXCR2A6NFK2 248 aa13.22□□□□□ -0.29
ZNF540-209ENST00000590588 ASB14A6NK59 587 aa13.22□□□□□ -0.29
ZNF540-209ENST00000590588 BAIAP3O94812 1187 aa13.22□□□□□ -0.29
ZNF540-209ENST00000590588 KCNA5P22460 613 aa13.22□□□□□ -0.29
ZNF540-209ENST00000590588 PTCRAQ6ISU1 281 aaPredicted RBP13.22□□□□□ -0.29
ZNF540-209ENST00000590588 RETREG2Q8NC44 543 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms