RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 KIF3AQ9Y496 699 aa12.1□□□□□ -0.47
VPS4B-204ENST00000589604 CYTH3O43739 400 aa12.09□□□□□ -0.47
VPS4B-204ENST00000589604 PDHBP11177 359 aa12.09□□□□□ -0.47
VPS4B-204ENST00000589604 HOXA7P31268 230 aaPredicted RBP12.09□□□□□ -0.47
VPS4B-204ENST00000589604 CAP1Q01518 475 aa12.09□□□□□ -0.47
VPS4B-204ENST00000589604 SLFN13Q68D06 897 aa12.09□□□□□ -0.47
VPS4B-204ENST00000589604 FAM173BQ6P4H8 233 aa12.09□□□□□ -0.47
VPS4B-204ENST00000589604 CATSPERGQ6ZRH7 1159 aa12.09□□□□□ -0.47
VPS4B-204ENST00000589604 C8orf76Q96K31 380 aa12.09□□□□□ -0.47
VPS4B-204ENST00000589604 SH2D4AQ9H788 454 aa12.09□□□□□ -0.47
VPS4B-204ENST00000589604 GOPCQ9HD26 462 aa12.09□□□□□ -0.47
VPS4B-204ENST00000589604 RYDENQ9NUL5 291 aaKnown RBP12.09□□□□□ -0.47
VPS4B-204ENST00000589604 V9GY48 417 aaPredicted RBP12.09□□□□□ -0.47
VPS4B-204ENST00000589604 hCG_1642624A0A1W2PR95 340 aa12.08□□□□□ -0.48
VPS4B-204ENST00000589604 H3BQV1 296 aa12.08□□□□□ -0.48
VPS4B-204ENST00000589604 DEXIO95424 95 aa12.08□□□□□ -0.48
VPS4B-204ENST00000589604 KIF5BP33176 963 aa12.08□□□□□ -0.48
VPS4B-204ENST00000589604 MCTP1Q6DN14 999 aa12.08□□□□□ -0.48
VPS4B-204ENST00000589604 TTBK2Q6IQ55 1244 aa12.08□□□□□ -0.48
VPS4B-204ENST00000589604 KCTD1Q719H9 257 aa12.08□□□□□ -0.48
VPS4B-204ENST00000589604 LPAR1Q92633 364 aa12.08□□□□□ -0.48
VPS4B-204ENST00000589604 GMCL1Q96IK5 515 aa12.08□□□□□ -0.48
VPS4B-204ENST00000589604 LMBRD1Q9NUN5 540 aa12.08□□□□□ -0.48
VPS4B-204ENST00000589604 SYNPO2Q9UMS6 1093 aa12.08□□□□□ -0.48
VPS4B-204ENST00000589604 A0A0G2JMZ2 1700 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 USP17L15C9J2P7 530 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 USP17L13C9JLJ4 530 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 USP17L11C9JVI0 530 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 USP17L18D6R9N7 530 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 USP17L22D6RA61 530 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 USP17L17D6RBQ6 530 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 USP17L19D6RCP7 530 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 USP17L20D6RJB6 530 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 WDR46O15213 610 aaKnown RBP12.07□□□□□ -0.48
VPS4B-204ENST00000589604 FOXN1O15353 648 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 CA12O43570 354 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 GOLGA8HP0CJ92 632 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 MAP2K1Q02750 393 aaPredicted RBP12.07□□□□□ -0.48
VPS4B-204ENST00000589604 USP17L24Q0WX57 530 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 TAF1CQ15572 869 aaPredicted RBP12.07□□□□□ -0.48
VPS4B-204ENST00000589604 FOXD4L6Q3SYB3 417 aaPredicted RBP12.07□□□□□ -0.48
VPS4B-204ENST00000589604 KRT40Q6A162 431 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 FOXD4L3Q6VB84 417 aaPredicted RBP12.07□□□□□ -0.48
VPS4B-204ENST00000589604 REM2Q8IYK8 340 aaPredicted RBP12.07□□□□□ -0.48
VPS4B-204ENST00000589604 TRIM22Q8IYM9 498 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 CPVLQ9H3G5 476 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 TXNRD2Q9NNW7 524 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 SLC45A1Q9Y2W3 748 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 ZSWIM8A7E2V4 1837 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 FRMPD2Q68DX3 1309 aaPredicted RBP12.07□□□□□ -0.48
VPS4B-204ENST00000589604 HTTP42858 3142 aa12.07□□□□□ -0.48
VPS4B-204ENST00000589604 SPDYE16A6NNV3 312 aaPredicted RBP12.06□□□□□ -0.48
VPS4B-204ENST00000589604 KIF28PB7ZC32 967 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 KLRF2D3W0D1 207 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 STK25O00506 426 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 CNMDO75829 334 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 GNAQP50148 359 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 DNM1Q05193 864 aaKnown RBP12.06□□□□□ -0.48
VPS4B-204ENST00000589604 PPP4R3BQ5MIZ7 849 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 SPZ1Q9BXG8 430 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 CFHR5Q9BXR6 569 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 TANGO6Q9C0B7 1094 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 ZSCAN16Q9H4T2 348 aaPredicted RBP12.06□□□□□ -0.48
VPS4B-204ENST00000589604 ZCCHC17Q9NP64 241 aaKnown RBP12.06□□□□□ -0.48
VPS4B-204ENST00000589604 CPA4Q9UI42 421 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 COL11A1P12107 1806 aaPredicted RBP12.06□□□□□ -0.48
VPS4B-204ENST00000589604 DDX11L8A8MPP1 907 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 PARP1P09874 1014 aaKnown RBP12.06□□□□□ -0.48
VPS4B-204ENST00000589604 HSPA1AP0DMV8 641 aaKnown RBP12.06□□□□□ -0.48
VPS4B-204ENST00000589604 HSPA1BP0DMV9 641 aaKnown RBP12.06□□□□□ -0.48
VPS4B-204ENST00000589604 BMP3P12645 472 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 SMARCA1P28370 1054 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 SLC16A2P36021 539 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 HERVK_113P62684 666 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 ZNF543Q08ER8 600 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 NPY5RQ15761 445 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 WASF1Q92558 559 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 ATG4CQ96DT6 458 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 LZTS2Q9BRK4 669 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 RIOX1Q9H6W3 641 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 GPCPD1Q9NPB8 672 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 RBPJLQ9UBG7 517 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 CNPY2Q9Y2B0 182 aa12.06□□□□□ -0.48
VPS4B-204ENST00000589604 SMCHD1A6NHR9 2005 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 TMEM232C9JQI7 657 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 TLR2O60603 784 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 FLOT1O75955 427 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 BCRP11274 1271 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 U2AF2P26368 475 aaKnown RBP eCLIP12.05□□□□□ -0.48
VPS4B-204ENST00000589604 DSG3P32926 999 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 SLC1A4P43007 532 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 SNAP25P60880 206 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 IRX3P78415 501 aaPredicted RBP12.05□□□□□ -0.48
VPS4B-204ENST00000589604 PFKFB3Q16875 520 aaPredicted RBP12.05□□□□□ -0.48
VPS4B-204ENST00000589604 ASPRV1Q53RT3 343 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 C17orf99Q6UX52 265 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 TMEM87AQ8NBN3 555 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 DCAF4Q8WV16 495 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 ARID3AQ99856 593 aa12.05□□□□□ -0.48
VPS4B-204ENST00000589604 GDPD2Q9HCC8 539 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 337 ms