RNA–Protein interactions for RNA: ENST00000589219.1

VPS25-202, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 914 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-202ENST00000589219 SMC2O95347 1197 aa11.33□□□□□ -0.6
VPS25-202ENST00000589219 TOP1P11387 765 aaKnown RBP11.33□□□□□ -0.6
VPS25-202ENST00000589219 NOVP48745 357 aa11.33□□□□□ -0.6
VPS25-202ENST00000589219 FKBP1BP68106 108 aa11.33□□□□□ -0.6
VPS25-202ENST00000589219 PNOCQ13519 176 aa11.33□□□□□ -0.6
VPS25-202ENST00000589219 LONRF3Q496Y0 759 aa11.33□□□□□ -0.6
VPS25-202ENST00000589219 PPP4R3BQ5MIZ7 849 aa11.33□□□□□ -0.6
VPS25-202ENST00000589219 BLIDQ8IZY5 108 aa11.33□□□□□ -0.6
VPS25-202ENST00000589219 ZNF713Q8N859 430 aaPredicted RBP11.33□□□□□ -0.6
VPS25-202ENST00000589219 MLKLQ8NB16 471 aa11.33□□□□□ -0.6
VPS25-202ENST00000589219 CCDC150Q8NCX0 1101 aa11.33□□□□□ -0.6
VPS25-202ENST00000589219 ERCC4Q92889 916 aaPredicted RBP11.33□□□□□ -0.6
VPS25-202ENST00000589219 SMARCE1Q969G3 411 aa11.33□□□□□ -0.6
VPS25-202ENST00000589219 FBXW7Q969H0 707 aa11.33□□□□□ -0.6
VPS25-202ENST00000589219 CDCA5Q96FF9 252 aa11.33□□□□□ -0.6
VPS25-202ENST00000589219 ZNF830Q96NB3 372 aaPredicted RBP11.33□□□□□ -0.6
VPS25-202ENST00000589219 OSBPL5Q9H0X9 879 aaPredicted RBP11.33□□□□□ -0.6
VPS25-202ENST00000589219 CSRNP2Q9H175 543 aa11.33□□□□□ -0.6
VPS25-202ENST00000589219 SAP30BPQ9UHR5 308 aaKnown RBP11.33□□□□□ -0.6
VPS25-202ENST00000589219 MAD2L2Q9UI95 211 aa11.33□□□□□ -0.6
VPS25-202ENST00000589219 PCDHA4Q9UN74 947 aa11.33□□□□□ -0.6
VPS25-202ENST00000589219 CASP8AP2Q9UKL3 1982 aa11.33□□□□□ -0.6
VPS25-202ENST00000589219 PALM3A6NDB9 673 aaPredicted RBP11.32□□□□□ -0.6
VPS25-202ENST00000589219 FAM205CA6NFA0 338 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 POLR2DO15514 142 aaKnown RBP11.32□□□□□ -0.6
VPS25-202ENST00000589219 PLCD1P51178 756 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 FKBP1AP62942 108 aaKnown RBP11.32□□□□□ -0.6
VPS25-202ENST00000589219 GTF2IP78347 998 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 MDM2Q00987 491 aaPredicted RBP11.32□□□□□ -0.6
VPS25-202ENST00000589219 NCAPHQ15003 741 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 EARS2Q5JPH6 523 aaKnown RBP11.32□□□□□ -0.6
VPS25-202ENST00000589219 DACT2Q5SW24 774 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 ARL6IP4Q66PJ3 421 aaKnown RBP11.32□□□□□ -0.6
VPS25-202ENST00000589219 DLK2Q6UY11 383 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 CHRDL2Q6WN34 429 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 REM2Q8IYK8 340 aaPredicted RBP11.32□□□□□ -0.6
VPS25-202ENST00000589219 SLC44A5Q8NCS7 719 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 ABHD8Q96I13 439 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 PRIMPOLQ96LW4 560 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 TMEM47Q9BQJ4 181 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 SWAP70Q9UH65 585 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 TSKSQ9UJT2 592 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 MAN1B1Q9UKM7 699 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 HDAC9Q9UKV0 1011 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 PYCARDQ9ULZ3 195 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 STX8Q9UNK0 236 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 R3HCC1Q9Y3T6 440 aaKnown RBP11.32□□□□□ -0.6
VPS25-202ENST00000589219 PCDHA5Q9Y5H7 936 aa11.32□□□□□ -0.6
VPS25-202ENST00000589219 ASTN2O75129 1339 aaPredicted RBP11.32□□□□□ -0.6
VPS25-202ENST00000589219 PAPPA2Q9BXP8 1791 aa11.31□□□□□ -0.6
VPS25-202ENST00000589219 ZNF646O15015 1829 aaPredicted RBP11.31□□□□□ -0.6
VPS25-202ENST00000589219 A0A087WWV3 80 aa11.31□□□□□ -0.6
VPS25-202ENST00000589219 hCG_1642624A0A1W2PR95 340 aa11.31□□□□□ -0.6
VPS25-202ENST00000589219 FAM155AB1AL88 458 aaPredicted RBP11.31□□□□□ -0.6
VPS25-202ENST00000589219 NRDCO43847 1150 aa11.31□□□□□ -0.6
VPS25-202ENST00000589219 PARP1P09874 1014 aaKnown RBP11.31□□□□□ -0.6
VPS25-202ENST00000589219 SLFN14P0C7P3 912 aa11.31□□□□□ -0.6
VPS25-202ENST00000589219 ATP2B1P20020 1258 aa11.31□□□□□ -0.6
VPS25-202ENST00000589219 TXLNAP40222 546 aa11.31□□□□□ -0.6
VPS25-202ENST00000589219 GRIN1Q05586 938 aa11.31□□□□□ -0.6
VPS25-202ENST00000589219 ORC2Q13416 577 aaPredicted RBP11.31□□□□□ -0.6
VPS25-202ENST00000589219 SLC4A8Q2Y0W8 1093 aa11.31□□□□□ -0.6
VPS25-202ENST00000589219 DNTTIP2Q5QJE6 756 aaKnown RBP11.31□□□□□ -0.6
VPS25-202ENST00000589219 HHIPL2Q6UWX4 724 aa11.31□□□□□ -0.6
VPS25-202ENST00000589219 PIK3AP1Q6ZUJ8 805 aa11.31□□□□□ -0.6
VPS25-202ENST00000589219 SAGE1Q9NXZ1 904 aa11.31□□□□□ -0.6
VPS25-202ENST00000589219 BARHL2Q9NY43 387 aa11.31□□□□□ -0.6
VPS25-202ENST00000589219 SERTAD1Q9UHV2 236 aa11.31□□□□□ -0.6
VPS25-202ENST00000589219 MYH1P12882 1939 aa11.31□□□□□ -0.6
VPS25-202ENST00000589219 CCDC194A0A1B0GVG4 234 aa11.3□□□□□ -0.6
VPS25-202ENST00000589219 ESYT2A0FGR8 921 aa11.3□□□□□ -0.6
VPS25-202ENST00000589219 M0R2N6 131 aa11.3□□□□□ -0.6
VPS25-202ENST00000589219 STXBP3O00186 592 aa11.3□□□□□ -0.6
VPS25-202ENST00000589219 LAD1O00515 517 aa11.3□□□□□ -0.6
VPS25-202ENST00000589219 SLC10A3P09131 477 aa11.3□□□□□ -0.6
VPS25-202ENST00000589219 NF2P35240 595 aa11.3□□□□□ -0.6
VPS25-202ENST00000589219 LONP1P36776 959 aaKnown RBP11.3□□□□□ -0.6
VPS25-202ENST00000589219 SARSP49591 514 aaKnown RBP11.3□□□□□ -0.6
VPS25-202ENST00000589219 GABPAQ06546 454 aa11.3□□□□□ -0.6
VPS25-202ENST00000589219 MORC3Q14149 939 aa11.3□□□□□ -0.6
VPS25-202ENST00000589219 CCDC144BQ3MJ40 725 aa11.3□□□□□ -0.6
VPS25-202ENST00000589219 ASPRV1Q53RT3 343 aa11.3□□□□□ -0.6
VPS25-202ENST00000589219 WWC2Q6AWC2 1192 aa11.3□□□□□ -0.6
VPS25-202ENST00000589219 KRT25Q7Z3Z0 450 aa11.3□□□□□ -0.6
VPS25-202ENST00000589219 SH3RF1Q7Z6J0 888 aa11.3□□□□□ -0.6
VPS25-202ENST00000589219 SPATA20Q8TB22 786 aa11.3□□□□□ -0.6
VPS25-202ENST00000589219 SYMPKQ92797 1274 aaKnown RBP11.3□□□□□ -0.6
VPS25-202ENST00000589219 TEKT1Q969V4 418 aa11.3□□□□□ -0.6
VPS25-202ENST00000589219 SEC63Q9UGP8 760 aaKnown RBP11.3□□□□□ -0.6
VPS25-202ENST00000589219 TTF2Q9UNY4 1162 aaKnown RBP11.3□□□□□ -0.6
VPS25-202ENST00000589219 WNT10BO00744 389 aa11.29□□□□□ -0.6
VPS25-202ENST00000589219 HLA-DOAP06340 250 aa11.29□□□□□ -0.6
VPS25-202ENST00000589219 ERCC5P28715 1186 aaPredicted RBP11.29□□□□□ -0.6
VPS25-202ENST00000589219 KCNJ6P48051 423 aa11.29□□□□□ -0.6
VPS25-202ENST00000589219 FANCCQ00597 558 aa11.29□□□□□ -0.6
VPS25-202ENST00000589219 PTGDRQ13258 359 aa11.29□□□□□ -0.6
VPS25-202ENST00000589219 ZNF174Q15697 407 aa11.29□□□□□ -0.6
VPS25-202ENST00000589219 NBPF9Q3BBW0 867 aa11.29□□□□□ -0.6
VPS25-202ENST00000589219 SPECC1Q5M775 1068 aa11.29□□□□□ -0.6
VPS25-202ENST00000589219 PPP1R18Q6NYC8 613 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms