RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 PFKFB3Q16875 520 aaPredicted RBP8.39□□□□□ -1.07
ZNF540-206ENST00000589117 ARL6IP4Q66PJ3 421 aaKnown RBP8.39□□□□□ -1.07
ZNF540-206ENST00000589117 ZNF444Q8N0Y2 327 aaPredicted RBP8.39□□□□□ -1.07
ZNF540-206ENST00000589117 DHX58Q96C10 678 aa8.39□□□□□ -1.07
ZNF540-206ENST00000589117 PPP1R13BQ96KQ4 1090 aa8.39□□□□□ -1.07
ZNF540-206ENST00000589117 LZTS2Q9BRK4 669 aa8.39□□□□□ -1.07
ZNF540-206ENST00000589117 RMND1Q9NWS8 449 aa8.39□□□□□ -1.07
ZNF540-206ENST00000589117 TFCP2L1Q9NZI6 479 aa8.39□□□□□ -1.07
ZNF540-206ENST00000589117 CYP2D7A0A087X1C5 515 aa8.38□□□□□ -1.07
ZNF540-206ENST00000589117 PLEKHA8P1O95397 391 aa8.38□□□□□ -1.07
ZNF540-206ENST00000589117 SOX11P35716 441 aa8.38□□□□□ -1.07
ZNF540-206ENST00000589117 PIP4K2BP78356 416 aa8.38□□□□□ -1.07
ZNF540-206ENST00000589117 ATP2C1P98194 919 aaPredicted RBP8.38□□□□□ -1.07
ZNF540-206ENST00000589117 DOK7Q18PE1 504 aa8.38□□□□□ -1.07
ZNF540-206ENST00000589117 TRAPPC3LQ5T215 181 aa8.38□□□□□ -1.07
ZNF540-206ENST00000589117 SPATA1Q5VX52 437 aa8.38□□□□□ -1.07
ZNF540-206ENST00000589117 E4F1Q66K89 784 aaPredicted RBP8.38□□□□□ -1.07
ZNF540-206ENST00000589117 CCDC148Q8NFR7 591 aa8.38□□□□□ -1.07
ZNF540-206ENST00000589117 SRRTQ9BXP5 876 aaKnown RBP8.38□□□□□ -1.07
ZNF540-206ENST00000589117 HSD3B7Q9H2F3 369 aa8.38□□□□□ -1.07
ZNF540-206ENST00000589117 USP27XA6NNY8 438 aa8.38□□□□□ -1.07
ZNF540-206ENST00000589117 PRDX5P30044 214 aa8.38□□□□□ -1.07
ZNF540-206ENST00000589117 LONP1P36776 959 aaKnown RBP8.38□□□□□ -1.07
ZNF540-206ENST00000589117 ETF1P62495 437 aaKnown RBP8.38□□□□□ -1.07
ZNF540-206ENST00000589117 ZNF174Q15697 407 aa8.38□□□□□ -1.07
ZNF540-206ENST00000589117 PUS10Q3MIT2 529 aaKnown RBP8.38□□□□□ -1.07
ZNF540-206ENST00000589117 PPFIBP1Q86W92 1011 aa8.38□□□□□ -1.07
ZNF540-206ENST00000589117 SRBD1Q8N5C6 995 aaKnown RBP8.38□□□□□ -1.07
ZNF540-206ENST00000589117 CCDC12Q8WUD4 166 aaPredicted RBP8.38□□□□□ -1.07
ZNF540-206ENST00000589117 C8orf37Q96NL8 207 aa8.38□□□□□ -1.07
ZNF540-206ENST00000589117 BAG1Q99933 345 aaPredicted RBP8.38□□□□□ -1.07
ZNF540-206ENST00000589117 DUOX1Q9NRD9 1551 aa8.38□□□□□ -1.07
ZNF540-206ENST00000589117 XDHP47989 1333 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 COL5A3P25940 1745 aaPredicted RBP8.37□□□□□ -1.07
ZNF540-206ENST00000589117 RBM47A0AV96 593 aaKnown RBP8.37□□□□□ -1.07
ZNF540-206ENST00000589117 VWA3AA6NCI4 1184 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 CFHP08603 1231 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 TSPY3P0CV98 308 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 TSPY8P0CW00 308 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 ZNF18P17022 549 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 BMP6P22004 513 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 TFAP4Q01664 338 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 GRIN1Q05586 938 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 NCBP1Q09161 790 aaKnown RBP8.37□□□□□ -1.07
ZNF540-206ENST00000589117 GRAPQ13588 217 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 FAM47AQ5JRC9 791 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 GRAPLQ8TC17 118 aaPredicted RBP8.37□□□□□ -1.07
ZNF540-206ENST00000589117 ANKS1AQ92625 1134 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 PAGE5Q96GU1 130 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 TMX1Q9H3N1 280 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 TCP11L1Q9NUJ3 509 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 PHLPP2Q6ZVD8 1323 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 CNTNAP5Q8WYK1 1306 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 CCDC194A0A1B0GVG4 234 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 USP17L5A8MUK1 530 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 LAD1O00515 517 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 FOXN1O15353 648 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 AFMP43652 599 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 PSEN2P49810 448 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 SPAG1Q07617 926 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 C12orf60Q5U649 245 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 PIK3AP1Q6ZUJ8 805 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 BLIDQ8IZY5 108 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 CNBD1Q8NA66 436 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 PNMA1Q8ND90 353 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 ZNF384Q8TF68 577 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 EPSTI1Q96J88 318 aa8.37□□□□□ -1.07
ZNF540-206ENST00000589117 NAA15Q9BXJ9 866 aaKnown RBP8.37□□□□□ -1.07
ZNF540-206ENST00000589117 GTPBP4Q9BZE4 634 aaKnown RBP8.37□□□□□ -1.07
ZNF540-206ENST00000589117 SRP68Q9UHB9 627 aaKnown RBP8.37□□□□□ -1.07
ZNF540-206ENST00000589117 COL1A1P02452 1464 aaPredicted RBP8.37□□□□□ -1.07
ZNF540-206ENST00000589117 CACNA1SQ13698 1873 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 hCG_1642624A0A1W2PR95 340 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 WTIPA6NIX2 430 aaPredicted RBP8.36□□□□□ -1.07
ZNF540-206ENST00000589117 MYL1P05976 194 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 MCM7P33993 719 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 PPP4CP60510 307 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 SYT10Q6XYQ8 523 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 SH3RF1Q7Z6J0 888 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 RPGRQ92834 1020 aaKnown RBP8.36□□□□□ -1.07
ZNF540-206ENST00000589117 PCDHA4Q9UN74 947 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 SYNRGQ9UMZ2 1314 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 AKR1B15C9JRZ8 316 aaPredicted RBP8.36□□□□□ -1.07
ZNF540-206ENST00000589117 SKIP12755 728 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 TM4SF1P30408 202 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 KCNQ4P56696 695 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 STIM1Q13586 685 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 ELOAQ14241 798 aaKnown RBP8.36□□□□□ -1.07
ZNF540-206ENST00000589117 NR1I3Q14994 352 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 DTHD1Q6ZMT9 781 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 C15orf52Q6ZUT6 534 aaKnown RBP8.36□□□□□ -1.07
ZNF540-206ENST00000589117 RASSF8Q8NHQ8 419 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 DPF2Q92785 391 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 TNFRSF25Q93038 417 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 CCDC47Q96A33 483 aaKnown RBP8.36□□□□□ -1.07
ZNF540-206ENST00000589117 MRRFQ96E11 262 aaKnown RBP8.36□□□□□ -1.07
ZNF540-206ENST00000589117 PANX2Q96RD6 677 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 ZBED2Q9BTP6 218 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 L2HGDHQ9H9P8 463 aa8.36□□□□□ -1.07
ZNF540-206ENST00000589117 OGFRQ9NZT2 677 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms