RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 IGHMBP2P38935 993 aaKnown RBP4.99□□□□□ -1.61
LIG3-211ENST00000588713 ATXN1P54253 815 aaKnown RBP4.99□□□□□ -1.61
LIG3-211ENST00000588713 CCL23P55773 120 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 Q3C1V9 767 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 PRAMEF19Q5SWL8 479 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 UTP14CQ5TAP6 766 aaKnown RBP4.99□□□□□ -1.61
LIG3-211ENST00000588713 ZKSCAN2Q63HK3 967 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 RNF180Q86T96 592 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 DCLK2Q8N568 766 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 PROCA1Q8NCQ7 364 aaPredicted RBP4.99□□□□□ -1.61
LIG3-211ENST00000588713 NPLOC4Q8TAT6 608 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 TNPO1Q92973 898 aaKnown RBP4.99□□□□□ -1.61
LIG3-211ENST00000588713 VTI1AQ96AJ9 217 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 PDLIM2Q96JY6 352 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 HNRNPABQ99729 332 aaKnown RBP4.99□□□□□ -1.61
LIG3-211ENST00000588713 TMUB1Q9BVT8 246 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 PRR14Q9BWN1 585 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 ANKRD2Q9GZV1 360 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 GREM2Q9H772 168 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 XPNPEP3Q9NQH7 507 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 DDX19BQ9UMR2 479 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 PCDHB3Q9Y5E6 796 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 LRRFIP2Q9Y608 721 aaKnown RBP4.99□□□□□ -1.61
LIG3-211ENST00000588713 SPEF2Q9C093 1822 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 DLG5Q8TDM6 1919 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 BRWD1Q9NSI6 2320 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 UMODL1Q5DID0 1318 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 K7ELQ4 463 aaPredicted RBP4.98□□□□□ -1.61
LIG3-211ENST00000588713 TAF5LO75529 589 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 SLURP2P0DP57 97 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 RIPK4P57078 832 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 ERVK-9P63128 1117 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 ERVK-24P63145 666 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 SPP2Q13103 211 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 TTLL4Q14679 1199 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 GRIK5Q16478 980 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 BMP2KLQ5H9B9 411 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 ZNF787Q6DD87 383 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 PRR23BQ6ZRT6 265 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 FTSJ3Q8IY81 847 aaKnown RBP4.98□□□□□ -1.61
LIG3-211ENST00000588713 CRACR2BQ8N4Y2 399 aaPredicted RBP4.98□□□□□ -1.61
LIG3-211ENST00000588713 TMEM105Q8N8V8 129 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 PLBD2Q8NHP8 589 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 TEKT1Q969V4 418 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 LENG1Q96BZ8 264 aaPredicted RBP4.98□□□□□ -1.61
LIG3-211ENST00000588713 ASIC4Q96FT7 647 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 CLDND1Q9NY35 253 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 LMCD1Q9NZU5 365 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 PRDM4Q9UKN5 801 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 CDV3Q9UKY7 258 aaKnown RBP4.98□□□□□ -1.61
LIG3-211ENST00000588713 NOL7Q9UMY1 257 aaKnown RBP4.98□□□□□ -1.61
LIG3-211ENST00000588713 IVNS1ABPQ9Y6Y0 642 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 ASPMQ8IZT6 3477 aa4.98□□□□□ -1.61
LIG3-211ENST00000588713 MROH7Q68CQ1 1323 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 SPTBN2O15020 2390 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 PHF20L1A8MW92 1017 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 KIF28PB7ZC32 967 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 GLRX3O76003 335 aaKnown RBP4.97□□□□□ -1.61
LIG3-211ENST00000588713 RARBP10826 455 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 RLBP1P12271 317 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 CTSWP56202 376 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 HERVK_113P62684 666 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 CHRNDQ07001 517 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 CHAF1AQ13111 956 aaPredicted RBP4.97□□□□□ -1.61
LIG3-211ENST00000588713 SMAD2Q15796 467 aaKnown RBP4.97□□□□□ -1.61
LIG3-211ENST00000588713 SASS6Q6UVJ0 657 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 GAS2L3Q86XJ1 694 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 CYP2W1Q8TAV3 490 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 NUP133Q8WUM0 1156 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 FAM151AQ8WW52 585 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 CFAP53Q96M91 514 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 MPHOSPH8Q99549 860 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 HIPK3Q9H422 1215 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 CHMP4BQ9H444 224 aaKnown RBP4.97□□□□□ -1.61
LIG3-211ENST00000588713 SUGCTQ9HAC7 445 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 RBPJLQ9UBG7 517 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 CCDC39Q9UFE4 941 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 ZMIZ1Q9ULJ6 1067 aa4.97□□□□□ -1.61
LIG3-211ENST00000588713 PHIPQ8WWQ0 1821 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 UQCRHLA0A096LP55 91 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 LCHNA4D1U4 455 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 SLC15A5A6NIM6 579 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 TLR3O15455 904 aaKnown RBP4.96□□□□□ -1.62
LIG3-211ENST00000588713 MBTPS2O43462 519 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 UQCRHP07919 91 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 SLC19A1P41440 591 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 MLLT3P42568 568 aaPredicted RBP4.96□□□□□ -1.62
LIG3-211ENST00000588713 ACLYP53396 1101 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 NUCB2P80303 420 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 NUCB1Q02818 461 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 NFIAQ12857 509 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 PPM1JQ5JR12 505 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 FKBP1CQ5VVH2 108 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 APOBEC3HQ6NTF7 200 aaKnown RBP4.96□□□□□ -1.62
LIG3-211ENST00000588713 BLOC1S3Q6QNY0 202 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 LRSAM1Q6UWE0 723 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 DEFB128Q7Z7B8 93 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 DPP9Q86TI2 863 aa4.96□□□□□ -1.62
LIG3-211ENST00000588713 ZSCAN29Q8IWY8 852 aaPredicted RBP4.96□□□□□ -1.62
LIG3-211ENST00000588713 RPUSD2Q8IZ73 545 aaKnown RBP4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms