RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 ZSCAN16Q9H4T2 348 aaPredicted RBP13.02□□□□□ -0.33
VMP1-207ENST00000588131 PASKQ96RG2 1323 aa13.02□□□□□ -0.33
VMP1-207ENST00000588131 hCG_1984214I3L0E3 225 aa13.01□□□□□ -0.33
VMP1-207ENST00000588131 CXCL11O14625 94 aa13.01□□□□□ -0.33
VMP1-207ENST00000588131 FLOT1O75955 427 aa13.01□□□□□ -0.33
VMP1-207ENST00000588131 U2AF2P26368 475 aaKnown RBP eCLIP13.01□□□□□ -0.33
VMP1-207ENST00000588131 KRT2P35908 639 aa13.01□□□□□ -0.33
VMP1-207ENST00000588131 DNM1Q05193 864 aaKnown RBP13.01□□□□□ -0.33
VMP1-207ENST00000588131 NR5A1Q13285 461 aa13.01□□□□□ -0.33
VMP1-207ENST00000588131 SAFBQ15424 915 aaKnown RBP eCLIP13.01□□□□□ -0.33
VMP1-207ENST00000588131 TREML2Q5T2D2 321 aa13.01□□□□□ -0.33
VMP1-207ENST00000588131 CCDC174Q6PII3 467 aa13.01□□□□□ -0.33
VMP1-207ENST00000588131 ZNF713Q8N859 430 aaPredicted RBP13.01□□□□□ -0.33
VMP1-207ENST00000588131 CCDC148Q8NFR7 591 aa13.01□□□□□ -0.33
VMP1-207ENST00000588131 WNK4Q96J92 1243 aa13.01□□□□□ -0.33
VMP1-207ENST00000588131 PPP1R9AQ9ULJ8 1098 aa13.01□□□□□ -0.33
VMP1-207ENST00000588131 SMCO2A6NFE2 343 aa13□□□□□ -0.33
VMP1-207ENST00000588131 MOGSQ13724 837 aa13□□□□□ -0.33
VMP1-207ENST00000588131 GNL2Q13823 731 aaKnown RBP13□□□□□ -0.33
VMP1-207ENST00000588131 NOM1Q5C9Z4 860 aaKnown RBP13□□□□□ -0.33
VMP1-207ENST00000588131 EARS2Q5JPH6 523 aaKnown RBP13□□□□□ -0.33
VMP1-207ENST00000588131 PPP1R18Q6NYC8 613 aa13□□□□□ -0.33
VMP1-207ENST00000588131 GADL1Q6ZQY3 521 aa13□□□□□ -0.33
VMP1-207ENST00000588131 CATSPERGQ6ZRH7 1159 aa13□□□□□ -0.33
VMP1-207ENST00000588131 BRAPQ7Z569 592 aa13□□□□□ -0.33
VMP1-207ENST00000588131 FBXO11Q86XK2 927 aa13□□□□□ -0.33
VMP1-207ENST00000588131 PRPF38AQ8NAV1 312 aaKnown RBP13□□□□□ -0.33
VMP1-207ENST00000588131 DAGLBQ8NCG7 672 aa13□□□□□ -0.33
VMP1-207ENST00000588131 SMC1BQ8NDV3 1235 aa13□□□□□ -0.33
VMP1-207ENST00000588131 TNFRSF25Q93038 417 aa13□□□□□ -0.33
VMP1-207ENST00000588131 GBP4Q96PP9 640 aa13□□□□□ -0.33
VMP1-207ENST00000588131 AMNQ9BXJ7 453 aa13□□□□□ -0.33
VMP1-207ENST00000588131 ZMYND12Q9H0C1 365 aa13□□□□□ -0.33
VMP1-207ENST00000588131 FOXP1Q9H334 677 aaPredicted RBP13□□□□□ -0.33
VMP1-207ENST00000588131 PCDHA4Q9UN74 947 aa13□□□□□ -0.33
VMP1-207ENST00000588131 CNPY2Q9Y2B0 182 aa13□□□□□ -0.33
VMP1-207ENST00000588131 ZNF536O15090 1300 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 ESYT2A0FGR8 921 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 FAM205CA6NFA0 338 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 USP17L15C9J2P7 530 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 USP17L13C9JLJ4 530 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 USP17L11C9JVI0 530 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 USP17L18D6R9N7 530 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 USP17L22D6RA61 530 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 USP17L17D6RBQ6 530 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 USP17L19D6RCP7 530 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 USP17L20D6RJB6 530 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 M0R2N6 131 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 CALML3P27482 149 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 USP17L24Q0WX57 530 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 MKRN3Q13064 507 aaKnown RBP12.99□□□□□ -0.33
VMP1-207ENST00000588131 NFKBIBQ15653 356 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 USH1GQ495M9 461 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 NOSTRINQ8IVI9 506 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 BLIDQ8IZY5 108 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 FAM177A1Q8N128 213 aaPredicted RBP12.99□□□□□ -0.33
VMP1-207ENST00000588131 PROCA1Q8NCQ7 364 aaPredicted RBP12.99□□□□□ -0.33
VMP1-207ENST00000588131 RASGRP4Q8TDF6 673 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 CCDC12Q8WUD4 166 aaPredicted RBP12.99□□□□□ -0.33
VMP1-207ENST00000588131 ATG4CQ96DT6 458 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 PCDHA1Q9Y5I3 950 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 ATP6V1DQ9Y5K8 247 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 COL11A1P12107 1806 aaPredicted RBP12.99□□□□□ -0.33
VMP1-207ENST00000588131 A0A0G2JMZ2 1700 aa12.99□□□□□ -0.33
VMP1-207ENST00000588131 MCM4P33991 863 aa12.98□□□□□ -0.33
VMP1-207ENST00000588131 HUNKP57058 714 aa12.98□□□□□ -0.33
VMP1-207ENST00000588131 MYSM1Q5VVJ2 828 aa12.98□□□□□ -0.33
VMP1-207ENST00000588131 GALNT17Q6IS24 598 aa12.98□□□□□ -0.33
VMP1-207ENST00000588131 FTOQ9C0B1 505 aaKnown RBP eCLIP12.98□□□□□ -0.33
VMP1-207ENST00000588131 SLC38A10Q9HBR0 1119 aa12.98□□□□□ -0.33
VMP1-207ENST00000588131 GDPD2Q9HCC8 539 aa12.98□□□□□ -0.33
VMP1-207ENST00000588131 BRMS1Q9HCU9 246 aa12.98□□□□□ -0.33
VMP1-207ENST00000588131 C6orf50Q9HD87 102 aa12.98□□□□□ -0.33
VMP1-207ENST00000588131 TFIP11Q9UBB9 837 aaKnown RBP12.98□□□□□ -0.33
VMP1-207ENST00000588131 PCDHA6Q9UN73 950 aa12.98□□□□□ -0.33
VMP1-207ENST00000588131 PCDHA8Q9Y5H6 950 aa12.98□□□□□ -0.33
VMP1-207ENST00000588131 SPDYE16A6NNV3 312 aaPredicted RBP12.97□□□□□ -0.33
VMP1-207ENST00000588131 VWA5AO00534 786 aa12.97□□□□□ -0.33
VMP1-207ENST00000588131 ICAM1P05362 532 aa12.97□□□□□ -0.33
VMP1-207ENST00000588131 NCLP19338 710 aaKnown RBP12.97□□□□□ -0.33
VMP1-207ENST00000588131 ADCY7P51828 1080 aa12.97□□□□□ -0.33
VMP1-207ENST00000588131 SNAPC2Q13487 334 aa12.97□□□□□ -0.33
VMP1-207ENST00000588131 COG2Q14746 738 aa12.97□□□□□ -0.33
VMP1-207ENST00000588131 SPRYD7Q5W111 196 aa12.97□□□□□ -0.33
VMP1-207ENST00000588131 GPAT2Q6NUI2 795 aa12.97□□□□□ -0.33
VMP1-207ENST00000588131 ZNF784Q8NCA9 323 aaPredicted RBP12.97□□□□□ -0.33
VMP1-207ENST00000588131 REPS2Q8NFH8 660 aa12.97□□□□□ -0.33
VMP1-207ENST00000588131 MS4A4AQ96JQ5 239 aa12.97□□□□□ -0.33
VMP1-207ENST00000588131 AGBL1Q96MI9 1066 aa12.97□□□□□ -0.33
VMP1-207ENST00000588131 USP28Q96RU2 1077 aa12.97□□□□□ -0.33
VMP1-207ENST00000588131 RAVER2Q9HCJ3 691 aaKnown RBP12.97□□□□□ -0.33
VMP1-207ENST00000588131 RIC8AQ9NPQ8 531 aa12.97□□□□□ -0.33
VMP1-207ENST00000588131 TMEM260Q9NX78 707 aa12.97□□□□□ -0.33
VMP1-207ENST00000588131 ADAMTS5Q9UNA0 930 aa12.97□□□□□ -0.33
VMP1-207ENST00000588131 AGTPBP1Q9UPW5 1226 aa12.97□□□□□ -0.33
VMP1-207ENST00000588131 TCHHQ07283 1943 aa12.97□□□□□ -0.33
VMP1-207ENST00000588131 SMCHD1A6NHR9 2005 aa12.96□□□□□ -0.33
VMP1-207ENST00000588131 MYPNQ86TC9 1320 aa12.96□□□□□ -0.33
VMP1-207ENST00000588131 OPLAHO14841 1288 aa12.96□□□□□ -0.33
VMP1-207ENST00000588131 FIBPO43427 364 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms