RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 ZNF543Q08ER8 600 aa12.72□□□□□ -0.37
CLIP3-203ENST00000586457 WTAPQ15007 396 aa12.72□□□□□ -0.37
CLIP3-203ENST00000586457 ASPRV1Q53RT3 343 aa12.72□□□□□ -0.37
CLIP3-203ENST00000586457 TMEM67Q5HYA8 995 aa12.72□□□□□ -0.37
CLIP3-203ENST00000586457 MAP3K21Q5TCX8 1036 aa12.72□□□□□ -0.37
CLIP3-203ENST00000586457 TTBK2Q6IQ55 1244 aa12.72□□□□□ -0.37
CLIP3-203ENST00000586457 NFXL1Q6ZNB6 911 aa12.72□□□□□ -0.37
CLIP3-203ENST00000586457 CATIPQ7Z7H3 387 aa12.72□□□□□ -0.37
CLIP3-203ENST00000586457 SKAP1Q86WV1 359 aa12.72□□□□□ -0.37
CLIP3-203ENST00000586457 ENAHQ8N8S7 591 aaPredicted RBP12.72□□□□□ -0.37
CLIP3-203ENST00000586457 ARRDC4Q8NCT1 418 aa12.72□□□□□ -0.37
CLIP3-203ENST00000586457 MPHOSPH6Q99547 160 aaKnown RBP12.72□□□□□ -0.37
CLIP3-203ENST00000586457 TINF2Q9BSI4 451 aa12.72□□□□□ -0.37
CLIP3-203ENST00000586457 VAT1LQ9HCJ6 419 aa12.72□□□□□ -0.37
CLIP3-203ENST00000586457 FLRT1Q9NZU1 646 aa12.72□□□□□ -0.37
CLIP3-203ENST00000586457 PFASO15067 1338 aa12.71□□□□□ -0.37
CLIP3-203ENST00000586457 ICAM1P05362 532 aa12.71□□□□□ -0.37
CLIP3-203ENST00000586457 GOLGA8HP0CJ92 632 aa12.71□□□□□ -0.37
CLIP3-203ENST00000586457 MCM5P33992 734 aa12.71□□□□□ -0.37
CLIP3-203ENST00000586457 BTNL9Q6UXG8 535 aa12.71□□□□□ -0.37
CLIP3-203ENST00000586457 NSMFQ6X4W1 530 aa12.71□□□□□ -0.37
CLIP3-203ENST00000586457 MSL3Q8N5Y2 521 aaKnown RBP12.71□□□□□ -0.37
CLIP3-203ENST00000586457 ANKS1AQ92625 1134 aa12.71□□□□□ -0.37
CLIP3-203ENST00000586457 PAWRQ96IZ0 340 aaKnown RBP12.71□□□□□ -0.37
CLIP3-203ENST00000586457 DDX20Q9UHI6 824 aaKnown RBP12.71□□□□□ -0.37
CLIP3-203ENST00000586457 NR2E3Q9Y5X4 410 aa12.71□□□□□ -0.37
CLIP3-203ENST00000586457 PLXNB2O15031 1838 aa12.7□□□□□ -0.38
CLIP3-203ENST00000586457 B4DLN1 442 aa12.7□□□□□ -0.38
CLIP3-203ENST00000586457 EVI5O60447 810 aa12.7□□□□□ -0.38
CLIP3-203ENST00000586457 MRPL12P52815 198 aaKnown RBP12.7□□□□□ -0.38
CLIP3-203ENST00000586457 FGD1P98174 961 aa12.7□□□□□ -0.38
CLIP3-203ENST00000586457 TRAF1Q13077 416 aa12.7□□□□□ -0.38
CLIP3-203ENST00000586457 ZNF792Q3KQV3 632 aa12.7□□□□□ -0.38
CLIP3-203ENST00000586457 PRAMEF19Q5SWL8 479 aa12.7□□□□□ -0.38
CLIP3-203ENST00000586457 SYNE3Q6ZMZ3 975 aa12.7□□□□□ -0.38
CLIP3-203ENST00000586457 CHST3Q7LGC8 479 aa12.7□□□□□ -0.38
CLIP3-203ENST00000586457 TMTC2Q8N394 836 aa12.7□□□□□ -0.38
CLIP3-203ENST00000586457 SHISA4Q96DD7 197 aa12.7□□□□□ -0.38
CLIP3-203ENST00000586457 UBA5Q9GZZ9 404 aa12.7□□□□□ -0.38
CLIP3-203ENST00000586457 CRISPLD2Q9H0B8 497 aa12.7□□□□□ -0.38
CLIP3-203ENST00000586457 RANBP17Q9H2T7 1088 aaKnown RBP12.7□□□□□ -0.38
CLIP3-203ENST00000586457 C11orf49Q9H6J7 331 aa12.7□□□□□ -0.38
CLIP3-203ENST00000586457 NRBP1Q9UHY1 535 aa12.7□□□□□ -0.38
CLIP3-203ENST00000586457 KIAA0100Q14667 2235 aaKnown RBP12.7□□□□□ -0.38
CLIP3-203ENST00000586457 RLFQ13129 1914 aa12.7□□□□□ -0.38
CLIP3-203ENST00000586457 COL11A1P12107 1806 aaPredicted RBP12.69□□□□□ -0.38
CLIP3-203ENST00000586457 RBBP6Q7Z6E9 1792 aaKnown RBP12.69□□□□□ -0.38
CLIP3-203ENST00000586457 A0A0G2JMZ2 1700 aa12.69□□□□□ -0.38
CLIP3-203ENST00000586457 PTPDC1A2A3K4 754 aa12.69□□□□□ -0.38
CLIP3-203ENST00000586457 CCDC69A6NI79 296 aa12.69□□□□□ -0.38
CLIP3-203ENST00000586457 ASB14A6NK59 587 aa12.69□□□□□ -0.38
CLIP3-203ENST00000586457 KBTBD13C9JR72 458 aa12.69□□□□□ -0.38
CLIP3-203ENST00000586457 SEPT4O43236 478 aa12.69□□□□□ -0.38
CLIP3-203ENST00000586457 RARBP10826 455 aa12.69□□□□□ -0.38
CLIP3-203ENST00000586457 USH1GQ495M9 461 aa12.69□□□□□ -0.38
CLIP3-203ENST00000586457 PRPF38BQ5VTL8 546 aaKnown RBP12.69□□□□□ -0.38
CLIP3-203ENST00000586457 CREB3L3Q68CJ9 461 aa12.69□□□□□ -0.38
CLIP3-203ENST00000586457 NOL8Q76FK4 1167 aaKnown RBP12.69□□□□□ -0.38
CLIP3-203ENST00000586457 CYB5R4Q7L1T6 521 aa12.69□□□□□ -0.38
CLIP3-203ENST00000586457 RASGRP2Q7LDG7 609 aa12.69□□□□□ -0.38
CLIP3-203ENST00000586457 LSG1Q9H089 658 aaKnown RBP12.69□□□□□ -0.38
CLIP3-203ENST00000586457 ADD3Q9UEY8 706 aaKnown RBP12.69□□□□□ -0.38
CLIP3-203ENST00000586457 ZHX1Q9UKY1 873 aaPredicted RBP12.69□□□□□ -0.38
CLIP3-203ENST00000586457 OGDHLQ9ULD0 1010 aa12.69□□□□□ -0.38
CLIP3-203ENST00000586457 HTTP42858 3142 aa12.69□□□□□ -0.38
CLIP3-203ENST00000586457 CENPFP49454 3210 aa12.68□□□□□ -0.38
CLIP3-203ENST00000586457 LAMA4Q16363 1823 aa12.68□□□□□ -0.38
CLIP3-203ENST00000586457 KLRF2D3W0D1 207 aa12.68□□□□□ -0.38
CLIP3-203ENST00000586457 SLC27A2O14975 620 aa12.68□□□□□ -0.38
CLIP3-203ENST00000586457 PRC1O43663 620 aa12.68□□□□□ -0.38
CLIP3-203ENST00000586457 REC8O95072 547 aa12.68□□□□□ -0.38
CLIP3-203ENST00000586457 SNHG28P0DPA3 235 aa12.68□□□□□ -0.38
CLIP3-203ENST00000586457 CYBAP13498 195 aa12.68□□□□□ -0.38
CLIP3-203ENST00000586457 KIF5BP33176 963 aa12.68□□□□□ -0.38
CLIP3-203ENST00000586457 KRT32Q14532 448 aa12.68□□□□□ -0.38
CLIP3-203ENST00000586457 ZNF467Q7Z7K2 595 aaPredicted RBP12.68□□□□□ -0.38
CLIP3-203ENST00000586457 ADGRF4Q8IZF3 695 aa12.68□□□□□ -0.38
CLIP3-203ENST00000586457 CTCFLQ8NI51 663 aaPredicted RBP12.68□□□□□ -0.38
CLIP3-203ENST00000586457 NUP133Q8WUM0 1156 aa12.68□□□□□ -0.38
CLIP3-203ENST00000586457 SPC25Q9HBM1 224 aa12.68□□□□□ -0.38
CLIP3-203ENST00000586457 FAM184BQ9ULE4 1060 aa12.68□□□□□ -0.38
CLIP3-203ENST00000586457 PARP14Q460N5 1801 aa12.67□□□□□ -0.38
CLIP3-203ENST00000586457 ZNF536O15090 1300 aa12.67□□□□□ -0.38
CLIP3-203ENST00000586457 SYNGAP1Q96PV0 1343 aa12.67□□□□□ -0.38
CLIP3-203ENST00000586457 AKR1A1P14550 325 aa12.67□□□□□ -0.38
CLIP3-203ENST00000586457 CALML3P27482 149 aa12.67□□□□□ -0.38
CLIP3-203ENST00000586457 CDC37Q16543 378 aaPredicted RBP12.67□□□□□ -0.38
CLIP3-203ENST00000586457 ANO1Q5XXA6 986 aa12.67□□□□□ -0.38
CLIP3-203ENST00000586457 LHX8Q68G74 356 aa12.67□□□□□ -0.38
CLIP3-203ENST00000586457 RNF207Q6ZRF8 634 aa12.67□□□□□ -0.38
CLIP3-203ENST00000586457 RNF180Q86T96 592 aa12.67□□□□□ -0.38
CLIP3-203ENST00000586457 FBXO11Q86XK2 927 aa12.67□□□□□ -0.38
CLIP3-203ENST00000586457 MCF2L2Q86YR7 1114 aa12.67□□□□□ -0.38
CLIP3-203ENST00000586457 TMEM87BQ96K49 555 aa12.67□□□□□ -0.38
CLIP3-203ENST00000586457 SENP6Q9GZR1 1112 aaPredicted RBP12.67□□□□□ -0.38
CLIP3-203ENST00000586457 ABHD16BQ9H3Z7 469 aa12.67□□□□□ -0.38
CLIP3-203ENST00000586457 A1CFQ9NQ94 594 aaKnown RBP12.67□□□□□ -0.38
CLIP3-203ENST00000586457 MRPL11Q9Y3B7 192 aaKnown RBP12.67□□□□□ -0.38
CLIP3-203ENST00000586457 DNAJC25-GNG10A0A024R161 153 aa12.66□□□□□ -0.38
CLIP3-203ENST00000586457 HMGB1P09429 215 aaKnown RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms