RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 RSBN1LQ6PCB5 846 aaPredicted RBP12.78□□□□□ -0.36
LIG3-204ENST00000585740 TMEM179Q6ZVK1 233 aa12.78□□□□□ -0.36
LIG3-204ENST00000585740 CCDC186Q7Z3E2 898 aa12.78□□□□□ -0.36
LIG3-204ENST00000585740 HOMER1Q86YM7 354 aa12.78□□□□□ -0.36
LIG3-204ENST00000585740 ZSCAN29Q8IWY8 852 aaPredicted RBP12.78□□□□□ -0.36
LIG3-204ENST00000585740 PDILTQ8N807 584 aa12.78□□□□□ -0.36
LIG3-204ENST00000585740 SPATA20Q8TB22 786 aa12.78□□□□□ -0.36
LIG3-204ENST00000585740 EPSTI1Q96J88 318 aa12.78□□□□□ -0.36
LIG3-204ENST00000585740 AK8Q96MA6 479 aa12.78□□□□□ -0.36
LIG3-204ENST00000585740 GSDMAQ96QA5 445 aa12.78□□□□□ -0.36
LIG3-204ENST00000585740 TTC12Q9H892 705 aaPredicted RBP12.78□□□□□ -0.36
LIG3-204ENST00000585740 A0A087WWV3 80 aa12.77□□□□□ -0.37
LIG3-204ENST00000585740 WNT7AO00755 349 aa12.77□□□□□ -0.37
LIG3-204ENST00000585740 VIL1P09327 827 aaKnown RBP12.77□□□□□ -0.37
LIG3-204ENST00000585740 ERCC5P28715 1186 aaPredicted RBP12.77□□□□□ -0.37
LIG3-204ENST00000585740 MMP14P50281 582 aa12.77□□□□□ -0.37
LIG3-204ENST00000585740 INF2Q27J81 1249 aa12.77□□□□□ -0.37
LIG3-204ENST00000585740 CCDC96Q2M329 555 aa12.77□□□□□ -0.37
LIG3-204ENST00000585740 NEK8Q86SG6 692 aa12.77□□□□□ -0.37
LIG3-204ENST00000585740 REXO1Q8N1G1 1221 aaKnown RBP12.77□□□□□ -0.37
LIG3-204ENST00000585740 LARGE2Q8N3Y3 721 aa12.77□□□□□ -0.37
LIG3-204ENST00000585740 ENOX1Q8TC92 643 aaKnown RBP12.77□□□□□ -0.37
LIG3-204ENST00000585740 PAGE5Q96GU1 130 aa12.77□□□□□ -0.37
LIG3-204ENST00000585740 NAP1L4Q99733 375 aaKnown RBP12.77□□□□□ -0.37
LIG3-204ENST00000585740 CCSER1Q9C0I3 900 aa12.77□□□□□ -0.37
LIG3-204ENST00000585740 UBA5Q9GZZ9 404 aa12.77□□□□□ -0.37
LIG3-204ENST00000585740 MAGEF1Q9HAY2 307 aa12.77□□□□□ -0.37
LIG3-204ENST00000585740 RRAGCQ9HB90 399 aa12.77□□□□□ -0.37
LIG3-204ENST00000585740 VAT1LQ9HCJ6 419 aa12.77□□□□□ -0.37
LIG3-204ENST00000585740 RMND1Q9NWS8 449 aa12.77□□□□□ -0.37
LIG3-204ENST00000585740 HERC5Q9UII4 1024 aaKnown RBP12.77□□□□□ -0.37
LIG3-204ENST00000585740 FRMPD2Q68DX3 1309 aaPredicted RBP12.77□□□□□ -0.37
LIG3-204ENST00000585740 YDJCA8MPS7 323 aa12.76□□□□□ -0.37
LIG3-204ENST00000585740 GTPBP6O43824 516 aaPredicted RBP12.76□□□□□ -0.37
LIG3-204ENST00000585740 MYL1P05976 194 aa12.76□□□□□ -0.37
LIG3-204ENST00000585740 PRR29P0C7W0 189 aa12.76□□□□□ -0.37
LIG3-204ENST00000585740 HSPA1AP0DMV8 641 aaKnown RBP12.76□□□□□ -0.37
LIG3-204ENST00000585740 HSPA1BP0DMV9 641 aaKnown RBP12.76□□□□□ -0.37
LIG3-204ENST00000585740 PTGS1P23219 599 aa12.76□□□□□ -0.37
LIG3-204ENST00000585740 TERF1P54274 439 aa12.76□□□□□ -0.37
LIG3-204ENST00000585740 TCP10Q12799 353 aa12.76□□□□□ -0.37
LIG3-204ENST00000585740 MCTP2Q6DN12 878 aa12.76□□□□□ -0.37
LIG3-204ENST00000585740 USP49Q70CQ1 688 aa12.76□□□□□ -0.37
LIG3-204ENST00000585740 ZFPM1Q8IX07 1006 aa12.76□□□□□ -0.37
LIG3-204ENST00000585740 RASGRP4Q8TDF6 673 aa12.76□□□□□ -0.37
LIG3-204ENST00000585740 MTMR8Q96EF0 704 aa12.76□□□□□ -0.37
LIG3-204ENST00000585740 GTPBP4Q9BZE4 634 aaKnown RBP12.76□□□□□ -0.37
LIG3-204ENST00000585740 CUEDC2Q9H467 287 aa12.76□□□□□ -0.37
LIG3-204ENST00000585740 GPCPD1Q9NPB8 672 aa12.76□□□□□ -0.37
LIG3-204ENST00000585740 SPTLC3Q9NUV7 552 aa12.76□□□□□ -0.37
LIG3-204ENST00000585740 DDTLA6NHG4 134 aaPredicted RBP12.75□□□□□ -0.37
LIG3-204ENST00000585740 ZBTB5O15062 677 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 FOXN1O15353 648 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 NRDCO43847 1150 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 OR52Z1P0C646 297 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 MRPL12P52815 198 aaKnown RBP12.75□□□□□ -0.37
LIG3-204ENST00000585740 EIF6P56537 245 aaKnown RBP12.75□□□□□ -0.37
LIG3-204ENST00000585740 FANCCQ00597 558 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 ATP2B2Q01814 1243 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 ICA1Q05084 483 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 DPYDQ12882 1025 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 NOLC1Q14978 699 aaKnown RBP eCLIP12.75□□□□□ -0.37
LIG3-204ENST00000585740 E2F4Q16254 413 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 ABCB5Q2M3G0 1257 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 RBM26Q5T8P6 1007 aaKnown RBP12.75□□□□□ -0.37
LIG3-204ENST00000585740 FKBP1CQ5VVH2 108 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 SLFN13Q68D06 897 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 ISM2Q6H9L7 571 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 SH3BP5LQ7L8J4 393 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 NIM1KQ8IY84 436 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 ADGRF4Q8IZF3 695 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 OGFOD1Q8N543 542 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 MTMR14Q8NCE2 650 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 SMC1BQ8NDV3 1235 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 GMCL1P1Q8NEA9 526 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 AGBL3Q8NEM8 1001 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 KIAA1524Q8TCG1 905 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 ZNF830Q96NB3 372 aaPredicted RBP12.75□□□□□ -0.37
LIG3-204ENST00000585740 CPVLQ9H3G5 476 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 KCNF1Q9H3M0 494 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 TDRD3Q9H7E2 651 aaKnown RBP12.75□□□□□ -0.37
LIG3-204ENST00000585740 DNAJC18Q9H819 358 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 JMJD4Q9H9V9 463 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 RIC8AQ9NPQ8 531 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 RNF181Q9P0P0 153 aa12.75□□□□□ -0.37
LIG3-204ENST00000585740 A0A087X0B3 334 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 SPDYE2BA6NHP3 402 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 ADAMTS3O15072 1205 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 SPDYE6P0CI01 402 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 EEF2P13639 858 aaKnown RBP12.74□□□□□ -0.37
LIG3-204ENST00000585740 UBA7P41226 1012 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 STAT6P42226 847 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 CACNB3P54284 484 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 DLGAP5Q15398 846 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 IL17AQ16552 155 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 PDXDC2PQ6P474 469 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 TEX2Q8IWB9 1127 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 CCDC150Q8NCX0 1101 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 FAM151AQ8WW52 585 aa12.74□□□□□ -0.37
LIG3-204ENST00000585740 CUL5Q93034 780 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms