RNA–Protein interactions for RNA: ENST00000583877.5

NUP85-223, Transcript of nucleoporin 85, human

TSL 3

Gene NUP85, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP85-223	ENST00000583877	AKNAD1	Q5T1N1	836 aa		10.5	□□□□□ -0.73
NUP85-223	ENST00000583877	RASIP1	Q5U651	963 aa		10.5	□□□□□ -0.73
NUP85-223	ENST00000583877	C16orf59	Q7L2K0	433 aa		10.5	□□□□□ -0.73
NUP85-223	ENST00000583877	PCSK9	Q8NBP7	692 aa	Known RBP	10.5	□□□□□ -0.73
NUP85-223	ENST00000583877	ATXN2L	Q8WWM7	1075 aa	Known RBP	10.5	□□□□□ -0.73
NUP85-223	ENST00000583877	DDRGK1	Q96HY6	314 aa		10.5	□□□□□ -0.73
NUP85-223	ENST00000583877	GLT1D1	Q96MS3	346 aa		10.5	□□□□□ -0.73
NUP85-223	ENST00000583877	TEX13B	Q9BXU2	312 aa		10.5	□□□□□ -0.73
NUP85-223	ENST00000583877	PBX4	Q9BYU1	374 aa		10.5	□□□□□ -0.73
NUP85-223	ENST00000583877	CYP2D7	A0A087X1C5	515 aa		10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	MYADML2	A6NDP7	307 aa		10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	USP17L12	C9JPN9	530 aa		10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	USP17L21	D6R901	530 aa		10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	SMIM22	K7EJ46	135 aa		10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	IFIT2	P09913	472 aa	Known RBP	10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	SNRNP48	Q6IEG0	339 aa	Known RBP	10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	PSRC1	Q6PGN9	363 aa	Predicted RBP	10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	CCDC129	Q6ZRS4	1044 aa		10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	TMEM199	Q8N511	208 aa		10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	KIF1BP	Q96EK5	621 aa		10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	DDX11	Q96FC9	970 aa		10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	SLF1	Q9BQI6	1058 aa		10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	10.49	□□□□□ -0.73	1e-6	■■■■■ 33.1
NUP85-223	ENST00000583877	UPF3A	Q9H1J1	476 aa	Known RBP	10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	SPC25	Q9HBM1	224 aa		10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	PAG1	Q9NWQ8	432 aa		10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	THEG	Q9P2T0	379 aa		10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	ZHX1	Q9UKY1	873 aa	Predicted RBP	10.49	□□□□□ -0.73
NUP85-223	ENST00000583877	ZBED9	Q6R2W3	1325 aa		10.49	□□□□□ -0.73
NUP85-223	ENST00000583877		A0A0U1RQG5	324 aa	Predicted RBP	10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	C19orf67	A6NJJ6	358 aa		10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	ARVCF	O00192	962 aa		10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	ATP2A1	O14983	1001 aa		10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	TLR3	O15455	904 aa	Known RBP	10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	RAD21	O60216	631 aa		10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	ASGR1	P07306	291 aa		10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	C6orf222	P0C671	652 aa	Predicted RBP	10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	CSF2RA	P15509	400 aa		10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	PBX2	P40425	430 aa		10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	GJA9	P57773	515 aa		10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	ACVR2B	Q13705	512 aa		10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	UBE3C	Q15386	1083 aa		10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	SLFNL1	Q499Z3	407 aa		10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	PRPF38A	Q8NAV1	312 aa	Known RBP	10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	ASB2	Q96Q27	587 aa		10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	ABHD16B	Q9H3Z7	469 aa		10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	PRDM12	Q9H4Q4	367 aa		10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	RIPK3	Q9Y572	518 aa		10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	TET1	Q8NFU7	2136 aa		10.48	□□□□□ -0.73
NUP85-223	ENST00000583877	TANC1	Q9C0D5	1861 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	GRXCR1	A8MXD5	290 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	ADCY6	O43306	1168 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	NKX3-2	P78367	333 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	MRPS5	P82675	430 aa	Known RBP	10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	RAB30	Q15771	203 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	E2F4	Q16254	413 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	CCDC144B	Q3MJ40	725 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	GNAS	Q5JWF2	1037 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	CTR9	Q6PD62	1173 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	ZNF365	Q70YC5	407 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	FAM126B	Q8IXS8	530 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	PPM1E	Q8WY54	764 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	VTI1A	Q96AJ9	217 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	MS4A3	Q96HJ5	214 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	NUP88	Q99567	741 aa	Predicted RBP	10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	IL23A	Q9NPF7	189 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	ARPP21	Q9UBL0	812 aa	Predicted RBP	10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	MSRA	Q9UJ68	235 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	TRPC6	Q9Y210	931 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	SLC4A4	Q9Y6R1	1079 aa		10.47	□□□□□ -0.73
NUP85-223	ENST00000583877	PTPRS	Q13332	1948 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877		F5H6K3	240 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	APBB1	O00213	710 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	ZBED4	O75132	1171 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	CD4	P01730	458 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	ACR	P10323	421 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	ATP5J	P18859	108 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	IRX5	P78411	483 aa	Predicted RBP	10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	KLRC3	Q07444	240 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	ADGRE1	Q14246	886 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	ZSCAN25	Q6NSZ9	544 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	ANKRD35	Q8N283	1001 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	ADAMTS19	Q8TE59	1207 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	HERVK_113	Q902F9	699 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	FGD4	Q96M96	766 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	HAUS7	Q99871	368 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	PPP1R12C	Q9BZL4	782 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	MTIF3	Q9H2K0	278 aa	Known RBP	10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	BOLA2	Q9H3K6	86 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	NYAP2	Q9P242	653 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	FBXO40	Q9UH90	709 aa		10.46	□□□□□ -0.73
NUP85-223	ENST00000583877	MYH6	P13533	1939 aa		10.46	□□□□□ -0.74
NUP85-223	ENST00000583877	SCN10A	Q9Y5Y9	1956 aa		10.46	□□□□□ -0.74
NUP85-223	ENST00000583877	RAB11FIP3	O75154	756 aa		10.45	□□□□□ -0.74
NUP85-223	ENST00000583877	HMMR	O75330	724 aa		10.45	□□□□□ -0.74
NUP85-223	ENST00000583877	NDUFB10	O96000	172 aa		10.45	□□□□□ -0.74
NUP85-223	ENST00000583877	RASA1	P20936	1047 aa		10.45	□□□□□ -0.74

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