RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 ADAMTS19Q8TE59 1207 aa11.89□□□□□ -0.51
RFFL-208ENST00000581039 HERVK_113Q902F9 699 aa11.89□□□□□ -0.51
RFFL-208ENST00000581039 KIFC2Q96AC6 838 aa11.89□□□□□ -0.51
RFFL-208ENST00000581039 TSPYL2Q9H2G4 693 aaPredicted RBP11.89□□□□□ -0.51
RFFL-208ENST00000581039 SLC28A3Q9HAS3 691 aa11.89□□□□□ -0.51
RFFL-208ENST00000581039 RAVER2Q9HCJ3 691 aaKnown RBP11.89□□□□□ -0.51
RFFL-208ENST00000581039 IL23AQ9NPF7 189 aa11.89□□□□□ -0.51
RFFL-208ENST00000581039 CLIP2Q9UDT6 1046 aa11.89□□□□□ -0.51
RFFL-208ENST00000581039 ZBED9Q6R2W3 1325 aa11.88□□□□□ -0.51
RFFL-208ENST00000581039 MINDY4BA8MYZ0 360 aa11.88□□□□□ -0.51
RFFL-208ENST00000581039 ADCY6O43306 1168 aa11.88□□□□□ -0.51
RFFL-208ENST00000581039 CHGBP05060 677 aa11.88□□□□□ -0.51
RFFL-208ENST00000581039 MS4A1P11836 297 aa11.88□□□□□ -0.51
RFFL-208ENST00000581039 RASA1P20936 1047 aa11.88□□□□□ -0.51
RFFL-208ENST00000581039 ADGRE1Q14246 886 aa11.88□□□□□ -0.51
RFFL-208ENST00000581039 SBK1Q52WX2 424 aa11.88□□□□□ -0.51
RFFL-208ENST00000581039 CCDC144CPQ8IYA2 1237 aa11.88□□□□□ -0.51
RFFL-208ENST00000581039 ZNF444Q8N0Y2 327 aaPredicted RBP11.88□□□□□ -0.51
RFFL-208ENST00000581039 UHRF1Q96T88 793 aaPredicted RBP11.88□□□□□ -0.51
RFFL-208ENST00000581039 PUS7LQ9H0K6 701 aaKnown RBP11.88□□□□□ -0.51
RFFL-208ENST00000581039 NKX2-4Q9H2Z4 354 aa11.88□□□□□ -0.51
RFFL-208ENST00000581039 SLC38A10Q9HBR0 1119 aa11.88□□□□□ -0.51
RFFL-208ENST00000581039 FEM1BQ9UK73 627 aa11.88□□□□□ -0.51
RFFL-208ENST00000581039 COL11A1P12107 1806 aaPredicted RBP11.88□□□□□ -0.51
RFFL-208ENST00000581039 PLXNA1Q9UIW2 1896 aa11.87□□□□□ -0.51
RFFL-208ENST00000581039 CABYRO75952 493 aa11.87□□□□□ -0.51
RFFL-208ENST00000581039 CD4P01730 458 aa11.87□□□□□ -0.51
RFFL-208ENST00000581039 OAZ1P54368 228 aa11.87□□□□□ -0.51
RFFL-208ENST00000581039 BEX3Q00994 111 aa11.87□□□□□ -0.51
RFFL-208ENST00000581039 TNFAIP2Q03169 654 aa11.87□□□□□ -0.51
RFFL-208ENST00000581039 CXCL17Q6UXB2 119 aa11.87□□□□□ -0.51
RFFL-208ENST00000581039 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.87□□□□□ -0.51
RFFL-208ENST00000581039 STRBPQ96SI9 672 aaKnown RBP11.87□□□□□ -0.51
RFFL-208ENST00000581039 SEZ6LQ9BYH1 1024 aa11.87□□□□□ -0.51
RFFL-208ENST00000581039 HIPK3Q9H422 1215 aa11.87□□□□□ -0.51
RFFL-208ENST00000581039 ZNF287Q9HBT7 754 aa11.87□□□□□ -0.51
RFFL-208ENST00000581039 CXXC1Q9P0U4 656 aaPredicted RBP11.87□□□□□ -0.51
RFFL-208ENST00000581039 MYH8P13535 1937 aa11.87□□□□□ -0.51
RFFL-208ENST00000581039 MUC3AQ02505 3323 aa11.87□□□□□ -0.51
RFFL-208ENST00000581039 MYO9BQ13459 2157 aa11.86□□□□□ -0.51
RFFL-208ENST00000581039 PARP14Q460N5 1801 aa11.86□□□□□ -0.51
RFFL-208ENST00000581039 CTAGE5O15320 804 aa11.86□□□□□ -0.51
RFFL-208ENST00000581039 ZEB2O60315 1214 aa11.86□□□□□ -0.51
RFFL-208ENST00000581039 NKX3-2P78367 333 aa11.86□□□□□ -0.51
RFFL-208ENST00000581039 ITGA7Q13683 1181 aa11.86□□□□□ -0.51
RFFL-208ENST00000581039 GIMAP6Q6P9H5 292 aa11.86□□□□□ -0.51
RFFL-208ENST00000581039 OTOP2Q7RTS6 562 aa11.86□□□□□ -0.51
RFFL-208ENST00000581039 SIRT2Q8IXJ6 389 aa11.86□□□□□ -0.51
RFFL-208ENST00000581039 RPUSD2Q8IZ73 545 aaKnown RBP11.86□□□□□ -0.51
RFFL-208ENST00000581039 MKL1Q969V6 931 aa11.86□□□□□ -0.51
RFFL-208ENST00000581039 FGD4Q96M96 766 aa11.86□□□□□ -0.51
RFFL-208ENST00000581039 AP5M1Q9H0R1 490 aa11.86□□□□□ -0.51
RFFL-208ENST00000581039 HOMER2Q9NSB8 354 aa11.86□□□□□ -0.51
RFFL-208ENST00000581039 RAPGEFL1Q9UHV5 662 aa11.86□□□□□ -0.51
RFFL-208ENST00000581039 BAZ2AQ9UIF9 1905 aaKnown RBP11.86□□□□□ -0.51
RFFL-208ENST00000581039 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.85□□□□□ -0.51
RFFL-208ENST00000581039 ASB14A6NK59 587 aa11.85□□□□□ -0.51
RFFL-208ENST00000581039 GSG1L2A8MUP6 293 aa11.85□□□□□ -0.51
RFFL-208ENST00000581039 DYNC1LI2O43237 492 aaPredicted RBP11.85□□□□□ -0.51
RFFL-208ENST00000581039 FDX1P10109 184 aa11.85□□□□□ -0.51
RFFL-208ENST00000581039 CCL23P55773 120 aa11.85□□□□□ -0.51
RFFL-208ENST00000581039 HNRNPUQ00839 825 aaKnown RBP eCLIP11.85□□□□□ -0.51
RFFL-208ENST00000581039 CNTN2Q02246 1040 aa11.85□□□□□ -0.51
RFFL-208ENST00000581039 FSCN1Q16658 493 aaKnown RBP11.85□□□□□ -0.51
RFFL-208ENST00000581039 SLC43A3Q8NBI5 491 aa11.85□□□□□ -0.51
RFFL-208ENST00000581039 KATNBL1Q9H079 304 aa11.85□□□□□ -0.51
RFFL-208ENST00000581039 ACAD9Q9H845 621 aa11.85□□□□□ -0.51
RFFL-208ENST00000581039 MTMR4Q9NYA4 1195 aa11.85□□□□□ -0.51
RFFL-208ENST00000581039 ISY1Q9ULR0 285 aaKnown RBP11.85□□□□□ -0.51
RFFL-208ENST00000581039 DDX19BQ9UMR2 479 aa11.85□□□□□ -0.51
RFFL-208ENST00000581039 SYNPO2Q9UMS6 1093 aa11.85□□□□□ -0.51
RFFL-208ENST00000581039 YBX2Q9Y2T7 364 aaKnown RBP11.85□□□□□ -0.51
RFFL-208ENST00000581039 SLC4A7Q9Y6M7 1214 aa11.85□□□□□ -0.51
RFFL-208ENST00000581039 IGKV6D-41A0A0C4DH26 115 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 PRDM1O75626 825 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 TTLL1O95922 423 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 APPP05067 770 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 BMP3P12645 472 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 RABGGTBP53611 331 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 PPP2R2DQ66LE6 453 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 SLFN13Q68D06 897 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 TLK2Q86UE8 772 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 MICALL1Q8N3F8 863 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 FAM133AQ8N9E0 248 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 GMCL1P1Q8NEA9 526 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 CHURC1Q8WUH1 139 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 FAM122AQ96E09 287 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 CEP95Q96GE4 821 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 TRPV6Q9H1D0 765 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 CHMP4BQ9H444 224 aaKnown RBP11.84□□□□□ -0.51
RFFL-208ENST00000581039 ZBTB40Q9NUA8 1239 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 GNEQ9Y223 722 aaKnown RBP11.84□□□□□ -0.51
RFFL-208ENST00000581039 COG6Q9Y2V7 657 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 UMODL1Q5DID0 1318 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 NCOR1O75376 2440 aa11.84□□□□□ -0.51
RFFL-208ENST00000581039 SOWAHBA6NEL2 793 aa11.83□□□□□ -0.52
RFFL-208ENST00000581039 ZBBXA8MT70 800 aa11.83□□□□□ -0.52
RFFL-208ENST00000581039 TMEM232C9JQI7 657 aa11.83□□□□□ -0.52
RFFL-208ENST00000581039 SMPD1P17405 629 aa11.83□□□□□ -0.52
RFFL-208ENST00000581039 TDO2P48775 406 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms