RNA–Protein interactions for RNA: ENST00000580054.1

SMARCD2-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 5

Gene SMARCD2, Length 477 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-208ENST00000580054 SCLYQ96I15 445 aa11.23□□□□□ -0.61
SMARCD2-208ENST00000580054 NUP88Q99567 741 aaPredicted RBP11.23□□□□□ -0.61
SMARCD2-208ENST00000580054 NOC4LQ9BVI4 516 aaKnown RBP11.23□□□□□ -0.61
SMARCD2-208ENST00000580054 SH2D4AQ9H788 454 aa11.23□□□□□ -0.61
SMARCD2-208ENST00000580054 SLC4A7Q9Y6M7 1214 aa11.23□□□□□ -0.61
SMARCD2-208ENST00000580054 ASTN1O14525 1302 aa11.23□□□□□ -0.61
SMARCD2-208ENST00000580054 MYH7P12883 1935 aa11.23□□□□□ -0.61
SMARCD2-208ENST00000580054 MYH4Q9Y623 1939 aa11.23□□□□□ -0.61
SMARCD2-208ENST00000580054 CYP2D7A0A087X1C5 515 aa11.22□□□□□ -0.61
SMARCD2-208ENST00000580054 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.22□□□□□ -0.61
SMARCD2-208ENST00000580054 GRIN2DO15399 1336 aa11.22□□□□□ -0.61
SMARCD2-208ENST00000580054 RAD21O60216 631 aa11.22□□□□□ -0.61
SMARCD2-208ENST00000580054 LCTP09848 1927 aa11.22□□□□□ -0.61
SMARCD2-208ENST00000580054 EEF2P13639 858 aaKnown RBP11.22□□□□□ -0.61
SMARCD2-208ENST00000580054 ATP2A2P16615 1042 aaKnown RBP11.22□□□□□ -0.61
SMARCD2-208ENST00000580054 TTLL4Q14679 1199 aa11.22□□□□□ -0.61
SMARCD2-208ENST00000580054 SNRNP48Q6IEG0 339 aaKnown RBP11.22□□□□□ -0.61
SMARCD2-208ENST00000580054 SPRED2Q7Z698 418 aa11.22□□□□□ -0.61
SMARCD2-208ENST00000580054 TMEM57Q8N5G2 664 aa11.22□□□□□ -0.61
SMARCD2-208ENST00000580054 SLC43A3Q8NBI5 491 aa11.22□□□□□ -0.61
SMARCD2-208ENST00000580054 DDX11Q96FC9 970 aa11.22□□□□□ -0.61
SMARCD2-208ENST00000580054 CRNKL1Q9BZJ0 848 aaKnown RBP11.22□□□□□ -0.61
SMARCD2-208ENST00000580054 KATNBL1Q9H079 304 aa11.22□□□□□ -0.61
SMARCD2-208ENST00000580054 TRPV6Q9H1D0 765 aa11.22□□□□□ -0.61
SMARCD2-208ENST00000580054 DCP1AQ9NPI6 582 aaPredicted RBP11.22□□□□□ -0.61
SMARCD2-208ENST00000580054 GTPBP6O43824 516 aaPredicted RBP11.21□□□□□ -0.61
SMARCD2-208ENST00000580054 B4GALT4O60513 344 aa11.21□□□□□ -0.61
SMARCD2-208ENST00000580054 SURF6O75683 361 aaKnown RBP11.21□□□□□ -0.61
SMARCD2-208ENST00000580054 PDE6AP16499 860 aa11.21□□□□□ -0.61
SMARCD2-208ENST00000580054 POU3F3P20264 500 aaPredicted RBP11.21□□□□□ -0.61
SMARCD2-208ENST00000580054 COPB2P35606 906 aa11.21□□□□□ -0.61
SMARCD2-208ENST00000580054 SLC4A3P48751 1232 aa11.21□□□□□ -0.61
SMARCD2-208ENST00000580054 ARMCX2Q7L311 632 aa11.21□□□□□ -0.61
SMARCD2-208ENST00000580054 TEX13BQ9BXU2 312 aa11.21□□□□□ -0.61
SMARCD2-208ENST00000580054 C1orf115Q9H7X2 142 aa11.21□□□□□ -0.61
SMARCD2-208ENST00000580054 SPC25Q9HBM1 224 aa11.21□□□□□ -0.61
SMARCD2-208ENST00000580054 SWAP70Q9UH65 585 aa11.21□□□□□ -0.61
SMARCD2-208ENST00000580054 COG5Q9UP83 839 aa11.21□□□□□ -0.61
SMARCD2-208ENST00000580054 WDFY4Q6ZS81 3184 aa11.21□□□□□ -0.62
SMARCD2-208ENST00000580054 ZNF318Q5VUA4 2279 aa11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 ZNF532Q9HCE3 1301 aa11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 PI4K2BG5E9Z4 385 aa11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 PRKAB2O43741 272 aa11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 MRE11P49959 708 aa11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 PSMC6P62333 389 aa11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 ITGA7Q13683 1181 aa11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 SLFNL1Q499Z3 407 aa11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 TMEM67Q5HYA8 995 aa11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 ZNF467Q7Z7K2 595 aaPredicted RBP11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 SSH3Q8TE77 659 aa11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 ARNTL2Q8WYA1 636 aa11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 HLA-CQ95604 372 aa11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 AGBL1Q96MI9 1066 aa11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 SLF1Q9BQI6 1058 aa11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 ABHD16BQ9H3Z7 469 aa11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 ARMT1Q9H993 441 aa11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 DDX49Q9Y6V7 483 aaKnown RBP11.2□□□□□ -0.62
SMARCD2-208ENST00000580054 TCRBV5S4A2TA0A5A2 114 aa11.19□□□□□ -0.62
SMARCD2-208ENST00000580054 CDK8P49336 464 aa11.19□□□□□ -0.62
SMARCD2-208ENST00000580054 NKX3-2P78367 333 aa11.19□□□□□ -0.62
SMARCD2-208ENST00000580054 ATP8B2P98198 1209 aa11.19□□□□□ -0.62
SMARCD2-208ENST00000580054 TAP1Q03518 808 aa11.19□□□□□ -0.62
SMARCD2-208ENST00000580054 GRB10Q13322 594 aa11.19□□□□□ -0.62
SMARCD2-208ENST00000580054 SLC9C2Q5TAH2 1124 aa11.19□□□□□ -0.62
SMARCD2-208ENST00000580054 ZKSCAN2Q63HK3 967 aa11.19□□□□□ -0.62
SMARCD2-208ENST00000580054 DEFB128Q7Z7B8 93 aa11.19□□□□□ -0.62
SMARCD2-208ENST00000580054 TLK2Q86UE8 772 aa11.19□□□□□ -0.62
SMARCD2-208ENST00000580054 CCDC144CPQ8IYA2 1237 aa11.19□□□□□ -0.62
SMARCD2-208ENST00000580054 CPXCR1Q8N123 301 aa11.19□□□□□ -0.62
SMARCD2-208ENST00000580054 SNX27Q96L92 541 aa11.19□□□□□ -0.62
SMARCD2-208ENST00000580054 GOPCQ9HD26 462 aa11.19□□□□□ -0.62
SMARCD2-208ENST00000580054 TRIP12Q14669 1992 aaPredicted RBP11.19□□□□□ -0.62
SMARCD2-208ENST00000580054 LPXNO60711 386 aa11.18□□□□□ -0.62
SMARCD2-208ENST00000580054 TMEM63BQ5T3F8 832 aa11.18□□□□□ -0.62
SMARCD2-208ENST00000580054 NOL8Q76FK4 1167 aaKnown RBP11.18□□□□□ -0.62
SMARCD2-208ENST00000580054 RPUSD2Q8IZ73 545 aaKnown RBP11.18□□□□□ -0.62
SMARCD2-208ENST00000580054 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.18□□□□□ -0.62
SMARCD2-208ENST00000580054 RAVER2Q9HCJ3 691 aaKnown RBP11.18□□□□□ -0.62
SMARCD2-208ENST00000580054 GNEQ9Y223 722 aaKnown RBP11.18□□□□□ -0.62
SMARCD2-208ENST00000580054 NOP58Q9Y2X3 529 aaKnown RBP11.18□□□□□ -0.62
SMARCD2-208ENST00000580054 SIP14410 1827 aa11.18□□□□□ -0.62
SMARCD2-208ENST00000580054 SCN10AQ9Y5Y9 1956 aa11.17□□□□□ -0.62
SMARCD2-208ENST00000580054 RBAK-RBAKDNI3L0D1 243 aa11.17□□□□□ -0.62
SMARCD2-208ENST00000580054 MBD4O95243 580 aa11.17□□□□□ -0.62
SMARCD2-208ENST00000580054 CYP2C9P11712 490 aa11.17□□□□□ -0.62
SMARCD2-208ENST00000580054 CNTN2Q02246 1040 aa11.17□□□□□ -0.62
SMARCD2-208ENST00000580054 TNFAIP2Q03169 654 aa11.17□□□□□ -0.62
SMARCD2-208ENST00000580054 FSCN1Q16658 493 aaKnown RBP11.17□□□□□ -0.62
SMARCD2-208ENST00000580054 C12orf60Q5U649 245 aa11.17□□□□□ -0.62
SMARCD2-208ENST00000580054 TMED8Q6PL24 325 aaPredicted RBP11.17□□□□□ -0.62
SMARCD2-208ENST00000580054 C16orf86Q6ZW13 317 aa11.17□□□□□ -0.62
SMARCD2-208ENST00000580054 AACSQ86V21 672 aa11.17□□□□□ -0.62
SMARCD2-208ENST00000580054 ANKRD35Q8N283 1001 aa11.17□□□□□ -0.62
SMARCD2-208ENST00000580054 GDPD5Q8WTR4 605 aa11.17□□□□□ -0.62
SMARCD2-208ENST00000580054 CCDC17Q96LX7 622 aa11.17□□□□□ -0.62
SMARCD2-208ENST00000580054 KANSL2Q9H9L4 492 aa11.17□□□□□ -0.62
SMARCD2-208ENST00000580054 TRMT13Q9NUP7 481 aaKnown RBP11.17□□□□□ -0.62
SMARCD2-208ENST00000580054 PRR33A8MZF0 331 aa11.16□□□□□ -0.62
SMARCD2-208ENST00000580054 CABYRO75952 493 aa11.16□□□□□ -0.62
SMARCD2-208ENST00000580054 NDUFB10O96000 172 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms