RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CCL15Q16663 113 aa12.38□□□□□ -0.43
SS18-213ENST00000579640 TREML2Q5T2D2 321 aa12.38□□□□□ -0.43
SS18-213ENST00000579640 KRT40Q6A162 431 aa12.38□□□□□ -0.43
SS18-213ENST00000579640 WWC2Q6AWC2 1192 aa12.38□□□□□ -0.43
SS18-213ENST00000579640 HEATR3Q7Z4Q2 680 aa12.38□□□□□ -0.43
SS18-213ENST00000579640 AIFM3Q96NN9 605 aa12.38□□□□□ -0.43
SS18-213ENST00000579640 PNMA3Q9UL41 463 aa12.38□□□□□ -0.43
SS18-213ENST00000579640 MTMR6Q9Y217 621 aa12.38□□□□□ -0.43
SS18-213ENST00000579640 CTDP1Q9Y5B0 961 aaPredicted RBP12.38□□□□□ -0.43
SS18-213ENST00000579640 RLFQ13129 1914 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 TESPA1A2RU30 521 aaPredicted RBP12.37□□□□□ -0.43
SS18-213ENST00000579640 ZSCAN22P10073 491 aaPredicted RBP12.37□□□□□ -0.43
SS18-213ENST00000579640 CALML3P27482 149 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 IRX3P78415 501 aaPredicted RBP12.37□□□□□ -0.43
SS18-213ENST00000579640 SAFBQ15424 915 aaKnown RBP eCLIP12.37□□□□□ -0.43
SS18-213ENST00000579640 GALNT17Q6IS24 598 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 ANKRD23Q86SG2 305 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 FBXO11Q86XK2 927 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 SLC38A10Q9HBR0 1119 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 CREBZFQ9NS37 354 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 VPS54Q9P1Q0 977 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 ADAMTS5Q9UNA0 930 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 ESYT2A0FGR8 921 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 STXBP3O00186 592 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 VWA5AO00534 786 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 MMP1P03956 469 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 OAZ1P54368 228 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 NAPAP54920 295 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 INHBEP58166 350 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 GPAT2Q6NUI2 795 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 LBX2Q6XYB7 198 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 TEX2Q8IWB9 1127 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 MB21D1Q8N884 522 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 GTF3C2Q8WUA4 911 aaPredicted RBP12.37□□□□□ -0.43
SS18-213ENST00000579640 GPKOWQ92917 476 aaPredicted RBP eCLIP12.37□□□□□ -0.43
SS18-213ENST00000579640 PHF20Q9BVI0 1012 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 GLT8D2Q9H1C3 349 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 BRMS1Q9HCU9 246 aa12.37□□□□□ -0.43
SS18-213ENST00000579640 SPDYE16A6NNV3 312 aaPredicted RBP12.36□□□□□ -0.43
SS18-213ENST00000579640 PPP1R11O60927 126 aaPredicted RBP12.36□□□□□ -0.43
SS18-213ENST00000579640 ICAM1P05362 532 aa12.36□□□□□ -0.43
SS18-213ENST00000579640 GNA11P29992 359 aa12.36□□□□□ -0.43
SS18-213ENST00000579640 FOSBP53539 338 aa12.36□□□□□ -0.43
SS18-213ENST00000579640 NLRP5P59047 1200 aa12.36□□□□□ -0.43
SS18-213ENST00000579640 MKRN3Q13064 507 aaKnown RBP12.36□□□□□ -0.43
SS18-213ENST00000579640 SAMD1Q6SPF0 538 aaPredicted RBP12.36□□□□□ -0.43
SS18-213ENST00000579640 BRI3BPQ8WY22 251 aa12.36□□□□□ -0.43
SS18-213ENST00000579640 ATG4CQ96DT6 458 aa12.36□□□□□ -0.43
SS18-213ENST00000579640 ZSCAN16Q9H4T2 348 aaPredicted RBP12.36□□□□□ -0.43
SS18-213ENST00000579640 ZCCHC17Q9NP64 241 aaKnown RBP12.36□□□□□ -0.43
SS18-213ENST00000579640 PCDHA1Q9Y5I3 950 aa12.36□□□□□ -0.43
SS18-213ENST00000579640 ATP2A1O14983 1001 aa12.35□□□□□ -0.43
SS18-213ENST00000579640 GUCY1B3Q02153 619 aa12.35□□□□□ -0.43
SS18-213ENST00000579640 PKP1Q13835 747 aa12.35□□□□□ -0.43
SS18-213ENST00000579640 OTUD7BQ6GQQ9 843 aa12.35□□□□□ -0.43
SS18-213ENST00000579640 CCDC174Q6PII3 467 aa12.35□□□□□ -0.43
SS18-213ENST00000579640 DAGLBQ8NCG7 672 aa12.35□□□□□ -0.43
SS18-213ENST00000579640 BICD2Q8TD16 824 aa12.35□□□□□ -0.43
SS18-213ENST00000579640 COA7Q96BR5 231 aa12.35□□□□□ -0.43
SS18-213ENST00000579640 ZMYND12Q9H0C1 365 aa12.35□□□□□ -0.43
SS18-213ENST00000579640 ASCC2Q9H1I8 757 aaPredicted RBP12.35□□□□□ -0.43
SS18-213ENST00000579640 C6orf50Q9HD87 102 aa12.35□□□□□ -0.43
SS18-213ENST00000579640 KCNJ14Q9UNX9 436 aa12.35□□□□□ -0.43
SS18-213ENST00000579640 ZDHHC9Q9Y397 364 aa12.35□□□□□ -0.43
SS18-213ENST00000579640 ATP6V1DQ9Y5K8 247 aa12.35□□□□□ -0.43
SS18-213ENST00000579640 ABCB11O95342 1321 aa12.35□□□□□ -0.43
SS18-213ENST00000579640 A0A0G2JMZ2 1700 aa12.35□□□□□ -0.43
SS18-213ENST00000579640 RASSF10A6NK89 507 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 FAM155AB1AL88 458 aaPredicted RBP12.34□□□□□ -0.43
SS18-213ENST00000579640 BTBD19C9JJ37 291 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 F13A1P00488 732 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 KRT2P35908 639 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 SNAP25P60880 206 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 HERVK_113P62684 666 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 SREBF2Q12772 1141 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 TYW1BQ6NUM6 668 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 REPS2Q8NFH8 660 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 SHISA4Q96DD7 197 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 P2RX7Q99572 595 aaKnown RBP12.34□□□□□ -0.43
SS18-213ENST00000579640 FOXP1Q9H334 677 aaPredicted RBP12.34□□□□□ -0.43
SS18-213ENST00000579640 GJB4Q9NTQ9 266 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 CCPG1Q9ULG6 757 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 PCDHA4Q9UN74 947 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 MRPL11Q9Y3B7 192 aaKnown RBP12.34□□□□□ -0.43
SS18-213ENST00000579640 ZNF536O15090 1300 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 SMCO2A6NFE2 343 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 PDHXO00330 501 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 MRPL12P52815 198 aaKnown RBP12.34□□□□□ -0.43
SS18-213ENST00000579640 KIF23Q02241 960 aaPredicted RBP12.34□□□□□ -0.43
SS18-213ENST00000579640 GNL2Q13823 731 aaKnown RBP12.34□□□□□ -0.43
SS18-213ENST00000579640 DEFB115Q30KQ5 88 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 MCTP1Q6DN14 999 aa12.34□□□□□ -0.43
SS18-213ENST00000579640 DIS3L2Q8IYB7 885 aaKnown RBP12.34□□□□□ -0.43
SS18-213ENST00000579640 U2AF2P26368 475 aaKnown RBP eCLIP12.33□□□□□ -0.441e-7■■■□□ 16.4
SS18-213ENST00000579640 ADCY7P51828 1080 aa12.33□□□□□ -0.44
SS18-213ENST00000579640 NOGQ13253 232 aa12.33□□□□□ -0.44
SS18-213ENST00000579640 TKFCQ3LXA3 575 aa12.33□□□□□ -0.44
SS18-213ENST00000579640 USH1GQ495M9 461 aa12.33□□□□□ -0.44
SS18-213ENST00000579640 BRAPQ7Z569 592 aa12.33□□□□□ -0.44
SS18-213ENST00000579640 REM2Q8IYK8 340 aaPredicted RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms