RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 MSCO60682 206 aa28.05■■■□□ 2.08
SHMT1-206ENST00000579558 TNKSO95271 1327 aa28.05■■■□□ 2.08
SHMT1-206ENST00000579558 CYP21A2P08686 494 aa28.05■■■□□ 2.08
SHMT1-206ENST00000579558 BMP2KLQ5H9B9 411 aa28.05■■■□□ 2.08
SHMT1-206ENST00000579558 ANKRD35Q8N283 1001 aa28.05■■■□□ 2.08
SHMT1-206ENST00000579558 UBAC1Q9BSL1 405 aa28.05■■■□□ 2.08
SHMT1-206ENST00000579558 KAT14Q9H8E8 782 aa28.05■■■□□ 2.08
SHMT1-206ENST00000579558 SNHG28P0DPA3 235 aa28.04■■■□□ 2.08
SHMT1-206ENST00000579558 ZNF543Q08ER8 600 aa28.04■■■□□ 2.08
SHMT1-206ENST00000579558 TRDNQ13061 729 aa28.04■■■□□ 2.08
SHMT1-206ENST00000579558 TKFCQ3LXA3 575 aa28.04■■■□□ 2.08
SHMT1-206ENST00000579558 PRAMEF19Q5SWL8 479 aa28.04■■■□□ 2.08
SHMT1-206ENST00000579558 ENAHQ8N8S7 591 aaPredicted RBP28.04■■■□□ 2.08
SHMT1-206ENST00000579558 PNMA1Q8ND90 353 aa28.04■■■□□ 2.08
SHMT1-206ENST00000579558 ANKS1AQ92625 1134 aa28.04■■■□□ 2.08
SHMT1-206ENST00000579558 TINF2Q9BSI4 451 aa28.04■■■□□ 2.08
SHMT1-206ENST00000579558 ACAD9Q9H845 621 aa28.04■■■□□ 2.08
SHMT1-206ENST00000579558 RNF146Q9NTX7 359 aa28.04■■■□□ 2.08
SHMT1-206ENST00000579558 DNAJC25-GNG10A0A024R161 153 aa28.03■■■□□ 2.08
SHMT1-206ENST00000579558 ALAS1P13196 640 aa28.03■■■□□ 2.08
SHMT1-206ENST00000579558 MNX1P50219 401 aaPredicted RBP28.03■■■□□ 2.08
SHMT1-206ENST00000579558 KIAA1211Q6ZU35 1233 aa28.03■■■□□ 2.08
SHMT1-206ENST00000579558 MAP4K1Q92918 833 aa28.03■■■□□ 2.08
SHMT1-206ENST00000579558 RANBP17Q9H2T7 1088 aaKnown RBP28.03■■■□□ 2.08
SHMT1-206ENST00000579558 TRERF1Q96PN7 1200 aa28.02■■■□□ 2.08
SHMT1-206ENST00000579558 ESYT1Q9BSJ8 1104 aa28.02■■■□□ 2.08
SHMT1-206ENST00000579558 CCPG1Q9ULG6 757 aa28.02■■■□□ 2.08
SHMT1-206ENST00000579558 RBM8AQ9Y5S9 174 aaKnown RBP28.02■■■□□ 2.08
SHMT1-206ENST00000579558 SEPT4O43236 478 aa28.01■■■□□ 2.07
SHMT1-206ENST00000579558 ICAM1P05362 532 aa28.01■■■□□ 2.07
SHMT1-206ENST00000579558 GPATCH4Q5T3I0 446 aaKnown RBP28.01■■■□□ 2.07
SHMT1-206ENST00000579558 CYB5R4Q7L1T6 521 aa28.01■■■□□ 2.07
SHMT1-206ENST00000579558 C11orf49Q9H6J7 331 aa28.01■■■□□ 2.07
SHMT1-206ENST00000579558 GOLGA8HP0CJ92 632 aa28■■■□□ 2.07
SHMT1-206ENST00000579558 NRBP1Q9UHY1 535 aa28■■■□□ 2.07
SHMT1-206ENST00000579558 TAF6LQ9Y6J9 622 aa28■■■□□ 2.07
SHMT1-206ENST00000579558 E7EWF7 191 aa27.99■■■□□ 2.07
SHMT1-206ENST00000579558 IFIT1BQ5T764 474 aaKnown RBP27.99■■■□□ 2.07
SHMT1-206ENST00000579558 RALYLQ86SE5 291 aaKnown RBP27.99■■■□□ 2.07
SHMT1-206ENST00000579558 MSL3Q8N5Y2 521 aaKnown RBP27.99■■■□□ 2.07
SHMT1-206ENST00000579558 A1CFQ9NQ94 594 aaKnown RBP27.99■■■□□ 2.07
SHMT1-206ENST00000579558 TAL1P17542 331 aaPredicted RBP27.98■■■□□ 2.07
SHMT1-206ENST00000579558 MUM1L1Q5H9M0 696 aa27.98■■■□□ 2.07
SHMT1-206ENST00000579558 ANO1Q5XXA6 986 aa27.98■■■□□ 2.07
SHMT1-206ENST00000579558 ZNF467Q7Z7K2 595 aaPredicted RBP27.98■■■□□ 2.07
SHMT1-206ENST00000579558 NCOA7Q8NI08 942 aa27.98■■■□□ 2.07
SHMT1-206ENST00000579558 LSG1Q9H089 658 aaKnown RBP27.98■■■□□ 2.07
SHMT1-206ENST00000579558 CNPY2Q9Y2B0 182 aa27.98■■■□□ 2.07
SHMT1-206ENST00000579558 SYNGAP1Q96PV0 1343 aa27.97■■■□□ 2.07
SHMT1-206ENST00000579558 POTEB2H3BUK9 544 aa27.97■■■□□ 2.07
SHMT1-206ENST00000579558 SEC23AQ15436 765 aa27.97■■■□□ 2.07
SHMT1-206ENST00000579558 MAMDC4Q6UXC1 1216 aa27.97■■■□□ 2.07
SHMT1-206ENST00000579558 STOX1Q6ZVD7 989 aa27.97■■■□□ 2.07
SHMT1-206ENST00000579558 PFASO15067 1338 aa27.96■■■□□ 2.07
SHMT1-206ENST00000579558 H0YGN5 161 aa27.96■■■□□ 2.07
SHMT1-206ENST00000579558 ASPRV1Q53RT3 343 aa27.96■■■□□ 2.07
SHMT1-206ENST00000579558 FGD4Q96M96 766 aa27.96■■■□□ 2.07
SHMT1-206ENST00000579558 UBA5Q9GZZ9 404 aa27.96■■■□□ 2.07
SHMT1-206ENST00000579558 NR2E3Q9Y5X4 410 aa27.96■■■□□ 2.07
SHMT1-206ENST00000579558 SMCHD1A6NHR9 2005 aa27.96■■■□□ 2.07
SHMT1-206ENST00000579558 ALPK3Q96L96 1907 aa27.95■■■□□ 2.06
SHMT1-206ENST00000579558 EVI5O60447 810 aa27.95■■■□□ 2.06
SHMT1-206ENST00000579558 CNTN2Q02246 1040 aa27.95■■■□□ 2.06
SHMT1-206ENST00000579558 CPVLQ9H3G5 476 aa27.95■■■□□ 2.06
SHMT1-206ENST00000579558 ANO2Q9NQ90 1003 aa27.95■■■□□ 2.06
SHMT1-206ENST00000579558 PNMA2Q9UL42 364 aa27.95■■■□□ 2.06
SHMT1-206ENST00000579558 ERICH2A1L162 156 aa27.94■■■□□ 2.06
SHMT1-206ENST00000579558 IFIT3O14879 490 aaKnown RBP27.94■■■□□ 2.06
SHMT1-206ENST00000579558 SNAI1O95863 264 aaPredicted RBP27.94■■■□□ 2.06
SHMT1-206ENST00000579558 PARP1P09874 1014 aaKnown RBP27.94■■■□□ 2.06
SHMT1-206ENST00000579558 ZNF865P0CJ78 1059 aaPredicted RBP27.94■■■□□ 2.06
SHMT1-206ENST00000579558 COL6A1P12109 1028 aa27.94■■■□□ 2.06
SHMT1-206ENST00000579558 NSMFQ6X4W1 530 aa27.94■■■□□ 2.06
SHMT1-206ENST00000579558 FAM133AQ8N9E0 248 aa27.94■■■□□ 2.06
SHMT1-206ENST00000579558 CASC1Q6TDU7 716 aa27.93■■■□□ 2.06
SHMT1-206ENST00000579558 ARRDC4Q8NCT1 418 aa27.93■■■□□ 2.06
SHMT1-206ENST00000579558 CDKN2AIPQ9NXV6 580 aaPredicted RBP27.93■■■□□ 2.06
SHMT1-206ENST00000579558 CYP39A1Q9NYL5 469 aa27.93■■■□□ 2.06
SHMT1-206ENST00000579558 ZHX1Q9UKY1 873 aaPredicted RBP27.93■■■□□ 2.06
SHMT1-206ENST00000579558 MCM3APO60318 1980 aa27.93■■■□□ 2.06
SHMT1-206ENST00000579558 WDR19Q8NEZ3 1342 aa27.92■■■□□ 2.06
SHMT1-206ENST00000579558 DNM1LO00429 736 aa27.92■■■□□ 2.06
SHMT1-206ENST00000579558 CDC45O75419 566 aa27.92■■■□□ 2.06
SHMT1-206ENST00000579558 MYCNP04198 464 aaPredicted RBP27.92■■■□□ 2.06
SHMT1-206ENST00000579558 RARBP10826 455 aa27.92■■■□□ 2.06
SHMT1-206ENST00000579558 AKR1A1P14550 325 aa27.92■■■□□ 2.06
SHMT1-206ENST00000579558 SART3Q15020 963 aaKnown RBP27.92■■■□□ 2.06
SHMT1-206ENST00000579558 GJC2Q5T442 439 aaPredicted RBP27.92■■■□□ 2.06
SHMT1-206ENST00000579558 ARMCX2Q7L311 632 aa27.92■■■□□ 2.06
SHMT1-206ENST00000579558 CHST3Q7LGC8 479 aa27.92■■■□□ 2.06
SHMT1-206ENST00000579558 SOWAHBA6NEL2 793 aa27.91■■■□□ 2.06
SHMT1-206ENST00000579558 WTAPQ15007 396 aa27.91■■■□□ 2.06
SHMT1-206ENST00000579558 MB21D2Q8IYB1 491 aaPredicted RBP27.91■■■□□ 2.06
SHMT1-206ENST00000579558 KBTBD13C9JR72 458 aa27.9■■■□□ 2.06
SHMT1-206ENST00000579558 NFIBO00712 420 aa27.9■■■□□ 2.06
SHMT1-206ENST00000579558 SLC27A2O14975 620 aa27.9■■■□□ 2.06
SHMT1-206ENST00000579558 DHX16O60231 1041 aaKnown RBP27.9■■■□□ 2.06
SHMT1-206ENST00000579558 CDC37Q16543 378 aaPredicted RBP27.9■■■□□ 2.06
SHMT1-206ENST00000579558 CCDC144CPQ8IYA2 1237 aa27.9■■■□□ 2.06
SHMT1-206ENST00000579558 ADGRF4Q8IZF3 695 aa27.9■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms