RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 NPY5RQ15761 445 aa18.61■□□□□ 0.57
SS18-211ENST00000578954 IFFO2Q5TF58 517 aa18.61■□□□□ 0.57
SS18-211ENST00000578954 GPAT2Q6NUI2 795 aa18.61■□□□□ 0.57
SS18-211ENST00000578954 TYW1BQ6NUM6 668 aa18.61■□□□□ 0.57
SS18-211ENST00000578954 GADL1Q6ZQY3 521 aa18.61■□□□□ 0.57
SS18-211ENST00000578954 GPKOWQ92917 476 aaPredicted RBP eCLIP18.61■□□□□ 0.57
SS18-211ENST00000578954 SLC38A10Q9HBR0 1119 aa18.61■□□□□ 0.57
SS18-211ENST00000578954 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.61■□□□□ 0.57
SS18-211ENST00000578954 SLC45A1Q9Y2W3 748 aa18.61■□□□□ 0.57
SS18-211ENST00000578954 TESPA1A2RU30 521 aaPredicted RBP18.6■□□□□ 0.57
SS18-211ENST00000578954 F13A1P00488 732 aa18.6■□□□□ 0.57
SS18-211ENST00000578954 TRAF1Q13077 416 aa18.6■□□□□ 0.57
SS18-211ENST00000578954 OTUD7BQ6GQQ9 843 aa18.6■□□□□ 0.57
SS18-211ENST00000578954 LBX2Q6XYB7 198 aa18.6■□□□□ 0.57
SS18-211ENST00000578954 HEATR3Q7Z4Q2 680 aa18.6■□□□□ 0.57
SS18-211ENST00000578954 DAGLBQ8NCG7 672 aa18.6■□□□□ 0.57
SS18-211ENST00000578954 REPS2Q8NFH8 660 aa18.6■□□□□ 0.57
SS18-211ENST00000578954 CCDC12Q8WUD4 166 aaPredicted RBP18.6■□□□□ 0.57
SS18-211ENST00000578954 AMNQ9BXJ7 453 aa18.6■□□□□ 0.57
SS18-211ENST00000578954 PNMA2Q9UL42 364 aa18.6■□□□□ 0.57
SS18-211ENST00000578954 ZNF536O15090 1300 aa18.59■□□□□ 0.57
SS18-211ENST00000578954 SPDYE16A6NNV3 312 aaPredicted RBP18.59■□□□□ 0.57
SS18-211ENST00000578954 VWA5AO00534 786 aa18.59■□□□□ 0.57
SS18-211ENST00000578954 ZNF157P51786 506 aaPredicted RBP18.59■□□□□ 0.57
SS18-211ENST00000578954 FOSBP53539 338 aa18.59■□□□□ 0.57
SS18-211ENST00000578954 GUCY1B3Q02153 619 aa18.59■□□□□ 0.57
SS18-211ENST00000578954 KIF23Q02241 960 aaPredicted RBP18.59■□□□□ 0.57
SS18-211ENST00000578954 RESTQ13127 1097 aa18.59■□□□□ 0.57
SS18-211ENST00000578954 PABPC4Q13310 644 aaKnown RBP eCLIP18.59■□□□□ 0.57
SS18-211ENST00000578954 GALNT17Q6IS24 598 aa18.59■□□□□ 0.57
SS18-211ENST00000578954 FBXO11Q86XK2 927 aa18.59■□□□□ 0.57
SS18-211ENST00000578954 BRI3BPQ8WY22 251 aa18.59■□□□□ 0.57
SS18-211ENST00000578954 ATG4CQ96DT6 458 aa18.59■□□□□ 0.57
SS18-211ENST00000578954 ZMYND12Q9H0C1 365 aa18.59■□□□□ 0.57
SS18-211ENST00000578954 HOXC10Q9NYD6 342 aa18.59■□□□□ 0.57
SS18-211ENST00000578954 FAM155AB1AL88 458 aaPredicted RBP18.58■□□□□ 0.56
SS18-211ENST00000578954 ATP2A1O14983 1001 aa18.58■□□□□ 0.56
SS18-211ENST00000578954 CALML3P27482 149 aa18.58■□□□□ 0.56
SS18-211ENST00000578954 OAZ1P54368 228 aa18.58■□□□□ 0.56
SS18-211ENST00000578954 ANKRD23Q86SG2 305 aa18.58■□□□□ 0.56
SS18-211ENST00000578954 TEX2Q8IWB9 1127 aa18.58■□□□□ 0.56
SS18-211ENST00000578954 ZSCAN16Q9H4T2 348 aaPredicted RBP18.58■□□□□ 0.56
SS18-211ENST00000578954 KCNJ14Q9UNX9 436 aa18.58■□□□□ 0.56
SS18-211ENST00000578954 CCL15-CCL14A0A0B4J2E2 113 aa18.57■□□□□ 0.56
SS18-211ENST00000578954 ICAM1P05362 532 aa18.57■□□□□ 0.56
SS18-211ENST00000578954 U2AF2P26368 475 aaKnown RBP eCLIP18.57■□□□□ 0.561e-7■■■□□ 18
SS18-211ENST00000578954 NAPAP54920 295 aa18.57■□□□□ 0.56
SS18-211ENST00000578954 SNAP25P60880 206 aa18.57■□□□□ 0.56
SS18-211ENST00000578954 CCL15Q16663 113 aa18.57■□□□□ 0.56
SS18-211ENST00000578954 DIS3L2Q8IYB7 885 aaKnown RBP18.57■□□□□ 0.56
SS18-211ENST00000578954 CCDC102AQ96A19 550 aa18.57■□□□□ 0.56
SS18-211ENST00000578954 COA7Q96BR5 231 aa18.57■□□□□ 0.56
SS18-211ENST00000578954 FOXP1Q9H334 677 aaPredicted RBP18.57■□□□□ 0.56
SS18-211ENST00000578954 PCDHA4Q9UN74 947 aa18.57■□□□□ 0.56
SS18-211ENST00000578954 PCDHA1Q9Y5I3 950 aa18.57■□□□□ 0.56
SS18-211ENST00000578954 MANSC4A6NHS7 340 aaPredicted RBP18.56■□□□□ 0.56
SS18-211ENST00000578954 KIF28PB7ZC32 967 aa18.56■□□□□ 0.56
SS18-211ENST00000578954 M0R2N6 131 aa18.56■□□□□ 0.56
SS18-211ENST00000578954 ZBED4O75132 1171 aa18.56■□□□□ 0.56
SS18-211ENST00000578954 NLRP5P59047 1200 aa18.56■□□□□ 0.56
SS18-211ENST00000578954 SAFBQ15424 915 aaKnown RBP eCLIP18.56■□□□□ 0.56
SS18-211ENST00000578954 CLEC17AQ6ZS10 378 aa18.56■□□□□ 0.56
SS18-211ENST00000578954 MB21D1Q8N884 522 aa18.56■□□□□ 0.56
SS18-211ENST00000578954 TNFRSF25Q93038 417 aa18.56■□□□□ 0.56
SS18-211ENST00000578954 ASCC2Q9H1I8 757 aaPredicted RBP18.56■□□□□ 0.56
SS18-211ENST00000578954 CREBZFQ9NS37 354 aa18.56■□□□□ 0.56
SS18-211ENST00000578954 ABT1Q9ULW3 272 aaKnown RBP18.56■□□□□ 0.56
SS18-211ENST00000578954 ABCB11O95342 1321 aa18.55■□□□□ 0.56
SS18-211ENST00000578954 BTBD19C9JJ37 291 aa18.55■□□□□ 0.56
SS18-211ENST00000578954 OSBPP22059 807 aa18.55■□□□□ 0.56
SS18-211ENST00000578954 GNA11P29992 359 aa18.55■□□□□ 0.56
SS18-211ENST00000578954 KRT2P35908 639 aa18.55■□□□□ 0.56
SS18-211ENST00000578954 APLP1P51693 650 aa18.55■□□□□ 0.56
SS18-211ENST00000578954 IRX3P78415 501 aaPredicted RBP18.55■□□□□ 0.56
SS18-211ENST00000578954 CCDC174Q6PII3 467 aa18.55■□□□□ 0.56
SS18-211ENST00000578954 POTEEQ6S8J3 1075 aa18.55■□□□□ 0.56
SS18-211ENST00000578954 BRAPQ7Z569 592 aa18.55■□□□□ 0.56
SS18-211ENST00000578954 BLIDQ8IZY5 108 aa18.55■□□□□ 0.56
SS18-211ENST00000578954 TNPO1Q92973 898 aaKnown RBP18.55■□□□□ 0.56
SS18-211ENST00000578954 GLT8D2Q9H1C3 349 aa18.55■□□□□ 0.56
SS18-211ENST00000578954 BRMS1Q9HCU9 246 aa18.55■□□□□ 0.56
SS18-211ENST00000578954 C6orf50Q9HD87 102 aa18.55■□□□□ 0.56
SS18-211ENST00000578954 ZCCHC17Q9NP64 241 aaKnown RBP18.55■□□□□ 0.56
SS18-211ENST00000578954 RIC8AQ9NPQ8 531 aa18.55■□□□□ 0.56
SS18-211ENST00000578954 PNMA3Q9UL41 463 aa18.55■□□□□ 0.56
SS18-211ENST00000578954 ZNF214Q9UL59 606 aaPredicted RBP18.55■□□□□ 0.56
SS18-211ENST00000578954 COL11A1P12107 1806 aaPredicted RBP18.54■□□□□ 0.56
SS18-211ENST00000578954 SMCO2A6NFE2 343 aa18.54■□□□□ 0.56
SS18-211ENST00000578954 RASSF10A6NK89 507 aa18.54■□□□□ 0.56
SS18-211ENST00000578954 BTBD18B2RXH4 712 aa18.54■□□□□ 0.56
SS18-211ENST00000578954 HERVK_113P62684 666 aa18.54■□□□□ 0.56
SS18-211ENST00000578954 GHRHRQ02643 423 aa18.54■□□□□ 0.56
SS18-211ENST00000578954 MKRN3Q13064 507 aaKnown RBP18.54■□□□□ 0.56
SS18-211ENST00000578954 FERMT3Q86UX7 667 aa18.54■□□□□ 0.56
SS18-211ENST00000578954 GTF3C2Q8WUA4 911 aaPredicted RBP18.54■□□□□ 0.56
SS18-211ENST00000578954 P2RX7Q99572 595 aaKnown RBP18.54■□□□□ 0.56
SS18-211ENST00000578954 ATP6V1DQ9Y5K8 247 aa18.54■□□□□ 0.56
SS18-211ENST00000578954 SMCHD1A6NHR9 2005 aa18.53■□□□□ 0.56
SS18-211ENST00000578954 OPLAHO14841 1288 aa18.53■□□□□ 0.56
SS18-211ENST00000578954 ADCY7P51828 1080 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms