RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 ERCC3P19447 782 aa12.86□□□□□ -0.35
CHD3-216ENST00000573936 GJA8P48165 433 aa12.86□□□□□ -0.35
CHD3-216ENST00000573936 ANAPC15P60006 121 aa12.86□□□□□ -0.35
CHD3-216ENST00000573936 FGD1P98174 961 aa12.86□□□□□ -0.35
CHD3-216ENST00000573936 IRF5Q13568 498 aa12.86□□□□□ -0.35
CHD3-216ENST00000573936 TKFCQ3LXA3 575 aa12.86□□□□□ -0.35
CHD3-216ENST00000573936 TTBK2Q6IQ55 1244 aa12.86□□□□□ -0.35
CHD3-216ENST00000573936 SGMS1Q86VZ5 419 aa12.86□□□□□ -0.35
CHD3-216ENST00000573936 TM6SF1Q9BZW5 370 aa12.86□□□□□ -0.35
CHD3-216ENST00000573936 PORCNQ9H237 461 aa12.86□□□□□ -0.35
CHD3-216ENST00000573936 ZNF214Q9UL59 606 aaPredicted RBP12.86□□□□□ -0.35
CHD3-216ENST00000573936 GABRQQ9UN88 632 aa12.86□□□□□ -0.35
CHD3-216ENST00000573936 GOLGA8HP0CJ92 632 aa12.85□□□□□ -0.35
CHD3-216ENST00000573936 CASTP20810 708 aaKnown RBP12.85□□□□□ -0.35
CHD3-216ENST00000573936 PTPREP23469 700 aa12.85□□□□□ -0.35
CHD3-216ENST00000573936 KIF5BP33176 963 aa12.85□□□□□ -0.35
CHD3-216ENST00000573936 SLC16A2P36021 539 aa12.85□□□□□ -0.35
CHD3-216ENST00000573936 RGS2P41220 211 aa12.85□□□□□ -0.35
CHD3-216ENST00000573936 GNAQP50148 359 aa12.85□□□□□ -0.35
CHD3-216ENST00000573936 TROAPQ12815 778 aa12.85□□□□□ -0.35
CHD3-216ENST00000573936 GRM4Q14833 912 aa12.85□□□□□ -0.35
CHD3-216ENST00000573936 C8orf34Q49A92 452 aa12.85□□□□□ -0.35
CHD3-216ENST00000573936 SNRNP48Q6IEG0 339 aaKnown RBP12.85□□□□□ -0.35
CHD3-216ENST00000573936 TRMT44Q8IYL2 757 aaKnown RBP12.85□□□□□ -0.35
CHD3-216ENST00000573936 ZNF654Q8IZM8 581 aa12.85□□□□□ -0.35
CHD3-216ENST00000573936 ABRAQ8N0Z2 381 aa12.85□□□□□ -0.35
CHD3-216ENST00000573936 CPXCR1Q8N123 301 aa12.85□□□□□ -0.35
CHD3-216ENST00000573936 CTCFLQ8NI51 663 aaPredicted RBP12.85□□□□□ -0.35
CHD3-216ENST00000573936 RANBP17Q9H2T7 1088 aaKnown RBP12.85□□□□□ -0.35
CHD3-216ENST00000573936 RAVER2Q9HCJ3 691 aaKnown RBP12.85□□□□□ -0.35
CHD3-216ENST00000573936 SLC5A4Q9NY91 659 aa12.85□□□□□ -0.35
CHD3-216ENST00000573936 FBXO40Q9UH90 709 aa12.85□□□□□ -0.35
CHD3-216ENST00000573936 GJD2Q9UKL4 321 aa12.85□□□□□ -0.35
CHD3-216ENST00000573936 SLC12A7Q9Y666 1083 aa12.85□□□□□ -0.35
CHD3-216ENST00000573936 RLFQ13129 1914 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 PALM3A6NDB9 673 aaPredicted RBP12.84□□□□□ -0.35
CHD3-216ENST00000573936 KLRF2D3W0D1 207 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 EVI5O60447 810 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 TFRCP02786 760 aaKnown RBP12.84□□□□□ -0.35
CHD3-216ENST00000573936 FCER1AP12319 257 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 ELNP15502 786 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 RPS6KB1P23443 525 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 FLT3LGP49771 235 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 MORN1Q5T089 497 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 RUFY3Q7L099 469 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 RASGRP2Q7LDG7 609 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 FBXL16Q8N461 479 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 SLAIN1Q8ND83 568 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 CHST13Q8NET6 341 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 PXYLP1Q8TE99 480 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 U2AF1L4Q8WU68 220 aaKnown RBP12.84□□□□□ -0.35
CHD3-216ENST00000573936 NUP133Q8WUM0 1156 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 LZTS2Q9BRK4 669 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 LRRC2Q9BYS8 371 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 UBA5Q9GZZ9 404 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 SENP2Q9HC62 589 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 ZSWIM6Q9HCJ5 1215 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 MAD2L2Q9UI95 211 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 CYP46A1Q9Y6A2 500 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 A0A0G2JMZ2 1700 aa12.84□□□□□ -0.35
CHD3-216ENST00000573936 ADCY3O60266 1144 aa12.83□□□□□ -0.36
CHD3-216ENST00000573936 FARP2O94887 1054 aaPredicted RBP12.83□□□□□ -0.36
CHD3-216ENST00000573936 ICAM1P05362 532 aa12.83□□□□□ -0.36
CHD3-216ENST00000573936 XRCC5P13010 732 aaKnown RBP12.83□□□□□ -0.36
CHD3-216ENST00000573936 CAPN2P17655 700 aa12.83□□□□□ -0.36
CHD3-216ENST00000573936 SLC4A3P48751 1232 aa12.83□□□□□ -0.36
CHD3-216ENST00000573936 TRAF1Q13077 416 aa12.83□□□□□ -0.36
CHD3-216ENST00000573936 MAP2K5Q13163 448 aa12.83□□□□□ -0.36
CHD3-216ENST00000573936 GRB14Q14449 540 aa12.83□□□□□ -0.36
CHD3-216ENST00000573936 CCDC174Q6PII3 467 aa12.83□□□□□ -0.36
CHD3-216ENST00000573936 Q6ZUG5 572 aa12.83□□□□□ -0.36
CHD3-216ENST00000573936 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.83□□□□□ -0.36
CHD3-216ENST00000573936 ADGRF4Q8IZF3 695 aa12.83□□□□□ -0.36
CHD3-216ENST00000573936 MMP19Q99542 508 aa12.83□□□□□ -0.36
CHD3-216ENST00000573936 UNC93B1Q9H1C4 597 aa12.83□□□□□ -0.36
CHD3-216ENST00000573936 GPHNQ9NQX3 736 aaPredicted RBP12.83□□□□□ -0.36
CHD3-216ENST00000573936 DOCK3Q8IZD9 2030 aa12.83□□□□□ -0.36
CHD3-216ENST00000573936 DHX16O60231 1041 aaKnown RBP12.82□□□□□ -0.36
CHD3-216ENST00000573936 SGPL1O95470 568 aa12.82□□□□□ -0.36
CHD3-216ENST00000573936 SEC24BO95487 1268 aa12.82□□□□□ -0.36
CHD3-216ENST00000573936 INHAP05111 366 aa12.82□□□□□ -0.36
CHD3-216ENST00000573936 SMARCA1P28370 1054 aa12.82□□□□□ -0.36
CHD3-216ENST00000573936 RCAN1P53805 252 aa12.82□□□□□ -0.36
CHD3-216ENST00000573936 KCTD2Q14681 263 aa12.82□□□□□ -0.36
CHD3-216ENST00000573936 PPP2R5BQ15173 497 aa12.82□□□□□ -0.36
CHD3-216ENST00000573936 DPP9Q86TI2 863 aa12.82□□□□□ -0.36
CHD3-216ENST00000573936 STAG2Q8N3U4 1231 aa12.82□□□□□ -0.36
CHD3-216ENST00000573936 USP6NLQ92738 828 aa12.82□□□□□ -0.36
CHD3-216ENST00000573936 AGBL1Q96MI9 1066 aa12.82□□□□□ -0.36
CHD3-216ENST00000573936 TCEANC2Q96MN5 208 aa12.82□□□□□ -0.36
CHD3-216ENST00000573936 APBA2Q99767 749 aa12.82□□□□□ -0.36
CHD3-216ENST00000573936 UPF2Q9HAU5 1272 aaKnown RBP12.82□□□□□ -0.36
CHD3-216ENST00000573936 VAT1LQ9HCJ6 419 aa12.82□□□□□ -0.36
CHD3-216ENST00000573936 RBM28Q9NW13 759 aaKnown RBP12.82□□□□□ -0.36
CHD3-216ENST00000573936 CCPG1Q9ULG6 757 aa12.82□□□□□ -0.36
CHD3-216ENST00000573936 PARP14Q460N5 1801 aa12.82□□□□□ -0.36
CHD3-216ENST00000573936 ZNF536O15090 1300 aa12.82□□□□□ -0.36
CHD3-216ENST00000573936 A0A1W2PPC1 479 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 ZBTB43O43298 467 aa12.81□□□□□ -0.36
CHD3-216ENST00000573936 HOXC6P09630 235 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms