RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 FPGT-TNNI3KV9GXZ4 949 aa21.92■■□□□ 1.1
CLK3-227ENST00000570296 SCN5AQ14524 2016 aa21.92■■□□□ 1.1
CLK3-227ENST00000570296 CFAP54Q96N23 3096 aa21.91■■□□□ 1.1
CLK3-227ENST00000570296 GRIN2DO15399 1336 aa21.91■■□□□ 1.1
CLK3-227ENST00000570296 KIF28PB7ZC32 967 aa21.91■■□□□ 1.1
CLK3-227ENST00000570296 B4GALT4O60513 344 aa21.91■■□□□ 1.1
CLK3-227ENST00000570296 ARHGEF15O94989 841 aa21.91■■□□□ 1.1
CLK3-227ENST00000570296 BEX3Q00994 111 aa21.91■■□□□ 1.1
CLK3-227ENST00000570296 SWAP70Q9UH65 585 aa21.91■■□□□ 1.1
CLK3-227ENST00000570296 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.9■■□□□ 1.1
CLK3-227ENST00000570296 DCXO43602 365 aa21.9■■□□□ 1.1
CLK3-227ENST00000570296 CLEC10AQ8IUN9 316 aa21.9■■□□□ 1.1
CLK3-227ENST00000570296 RIOK1Q9BRS2 568 aaKnown RBP21.9■■□□□ 1.1
CLK3-227ENST00000570296 MCM9Q9NXL9 1143 aa21.9■■□□□ 1.1
CLK3-227ENST00000570296 SPTBN4Q9H254 2564 aa21.9■■□□□ 1.1
CLK3-227ENST00000570296 ZEB2O60315 1214 aa21.89■■□□□ 1.09
CLK3-227ENST00000570296 SNRNP48Q6IEG0 339 aaKnown RBP21.89■■□□□ 1.09
CLK3-227ENST00000570296 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.89■■□□□ 1.09
CLK3-227ENST00000570296 ARMCX2Q7L311 632 aa21.89■■□□□ 1.09
CLK3-227ENST00000570296 HERC6Q8IVU3 1022 aa21.89■■□□□ 1.09
CLK3-227ENST00000570296 KATNBL1Q9H079 304 aa21.89■■□□□ 1.09
CLK3-227ENST00000570296 TRIOO75962 3097 aa21.88■■□□□ 1.09
CLK3-227ENST00000570296 ASTN1O14525 1302 aa21.88■■□□□ 1.09
CLK3-227ENST00000570296 E9PSI1 815 aa21.88■■□□□ 1.09
CLK3-227ENST00000570296 ST18O60284 1047 aa21.88■■□□□ 1.09
CLK3-227ENST00000570296 FOXK2Q01167 660 aa21.88■■□□□ 1.09
CLK3-227ENST00000570296 EVX2Q03828 476 aa21.88■■□□□ 1.09
CLK3-227ENST00000570296 FSCN1Q16658 493 aaKnown RBP21.88■■□□□ 1.09
CLK3-227ENST00000570296 FGD4Q96M96 766 aa21.88■■□□□ 1.09
CLK3-227ENST00000570296 NOB1Q9ULX3 412 aaKnown RBP21.88■■□□□ 1.09
CLK3-227ENST00000570296 POTEB3A0JP26 581 aa21.87■■□□□ 1.09
CLK3-227ENST00000570296 AKR1B1P15121 316 aa21.87■■□□□ 1.09
CLK3-227ENST00000570296 RFC2P35250 354 aa21.87■■□□□ 1.09
CLK3-227ENST00000570296 TNFAIP2Q03169 654 aa21.87■■□□□ 1.09
CLK3-227ENST00000570296 POTEBQ6S5H4 581 aa21.87■■□□□ 1.09
CLK3-227ENST00000570296 DEFB128Q7Z7B8 93 aa21.87■■□□□ 1.09
CLK3-227ENST00000570296 TLK2Q86UE8 772 aa21.87■■□□□ 1.09
CLK3-227ENST00000570296 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.87■■□□□ 1.09
CLK3-227ENST00000570296 CRNKL1Q9BZJ0 848 aaKnown RBP21.87■■□□□ 1.09
CLK3-227ENST00000570296 GOPCQ9HD26 462 aa21.87■■□□□ 1.09
CLK3-227ENST00000570296 ZNF536O15090 1300 aa21.86■■□□□ 1.09
CLK3-227ENST00000570296 SUPT20HL2P0C7V6 817 aa21.86■■□□□ 1.09
CLK3-227ENST00000570296 PUS10Q3MIT2 529 aaKnown RBP21.86■■□□□ 1.09
CLK3-227ENST00000570296 NOL8Q76FK4 1167 aaKnown RBP21.86■■□□□ 1.09
CLK3-227ENST00000570296 CCDC17Q96LX7 622 aa21.86■■□□□ 1.09
CLK3-227ENST00000570296 ALDH8A1Q9H2A2 487 aaPredicted RBP21.86■■□□□ 1.09
CLK3-227ENST00000570296 GNEQ9Y223 722 aaKnown RBP21.86■■□□□ 1.09
CLK3-227ENST00000570296 RIPK3Q9Y572 518 aa21.86■■□□□ 1.09
CLK3-227ENST00000570296 MAGEB6P1A0A0J9YX57 407 aa21.85■■□□□ 1.09
CLK3-227ENST00000570296 PNMA6EA0A0J9YXQ4 647 aa21.85■■□□□ 1.09
CLK3-227ENST00000570296 ATP2A1O14983 1001 aa21.85■■□□□ 1.09
CLK3-227ENST00000570296 IL9P15248 144 aa21.85■■□□□ 1.09
CLK3-227ENST00000570296 KCNA5P22460 613 aa21.85■■□□□ 1.09
CLK3-227ENST00000570296 FAM83BQ5T0W9 1011 aa21.85■■□□□ 1.09
CLK3-227ENST00000570296 PTCRAQ6ISU1 281 aaPredicted RBP21.85■■□□□ 1.09
CLK3-227ENST00000570296 CCDC144CPQ8IYA2 1237 aa21.85■■□□□ 1.09
CLK3-227ENST00000570296 GDPD5Q8WTR4 605 aa21.85■■□□□ 1.09
CLK3-227ENST00000570296 SLF1Q9BQI6 1058 aa21.85■■□□□ 1.09
CLK3-227ENST00000570296 AP5M1Q9H0R1 490 aa21.85■■□□□ 1.09
CLK3-227ENST00000570296 TANC1Q9C0D5 1861 aa21.85■■□□□ 1.09
CLK3-227ENST00000570296 PTPRSQ13332 1948 aa21.84■■□□□ 1.09
CLK3-227ENST00000570296 EEF2P13639 858 aaKnown RBP21.84■■□□□ 1.09
CLK3-227ENST00000570296 ANKRD35Q8N283 1001 aa21.84■■□□□ 1.09
CLK3-227ENST00000570296 MFSD14AQ96MC6 490 aa21.84■■□□□ 1.09
CLK3-227ENST00000570296 FBXO40Q9UH90 709 aa21.84■■□□□ 1.09
CLK3-227ENST00000570296 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.83■■□□□ 1.09
CLK3-227ENST00000570296 GRXCR2A6NFK2 248 aa21.83■■□□□ 1.09
CLK3-227ENST00000570296 SPRED2Q7Z698 418 aa21.83■■□□□ 1.09
CLK3-227ENST00000570296 KANSL2Q9H9L4 492 aa21.83■■□□□ 1.09
CLK3-227ENST00000570296 DBNLQ9UJU6 430 aaKnown RBP21.83■■□□□ 1.09
CLK3-227ENST00000570296 TET1Q8NFU7 2136 aa21.83■■□□□ 1.08
CLK3-227ENST00000570296 BAIAP3O94812 1187 aa21.82■■□□□ 1.08
CLK3-227ENST00000570296 GNAI2P04899 355 aa21.82■■□□□ 1.08
CLK3-227ENST00000570296 CYP2D6P10635 497 aa21.82■■□□□ 1.08
CLK3-227ENST00000570296 PSMC6P62333 389 aa21.82■■□□□ 1.08
CLK3-227ENST00000570296 HFE2Q6ZVN8 426 aa21.82■■□□□ 1.08
CLK3-227ENST00000570296 DYNLL2Q96FJ2 89 aa21.82■■□□□ 1.08
CLK3-227ENST00000570296 DCP1AQ9NPI6 582 aaPredicted RBP21.82■■□□□ 1.08
CLK3-227ENST00000570296 TNKSO95271 1327 aa21.81■■□□□ 1.08
CLK3-227ENST00000570296 SIP14410 1827 aa21.81■■□□□ 1.08
CLK3-227ENST00000570296 ZFHX2Q9C0A1 2572 aaPredicted RBP21.81■■□□□ 1.08
CLK3-227ENST00000570296 CYP2C9P11712 490 aa21.81■■□□□ 1.08
CLK3-227ENST00000570296 PHOX2BQ99453 314 aa21.81■■□□□ 1.08
CLK3-227ENST00000570296 TRMT13Q9NUP7 481 aaKnown RBP21.81■■□□□ 1.08
CLK3-227ENST00000570296 Q9Y3F1 56 aa21.81■■□□□ 1.08
CLK3-227ENST00000570296 CACNA1HO95180 2353 aa21.8■■□□□ 1.08
CLK3-227ENST00000570296 DYNC1LI2O43237 492 aaPredicted RBP21.8■■□□□ 1.08
CLK3-227ENST00000570296 RAD21O60216 631 aa21.8■■□□□ 1.08
CLK3-227ENST00000570296 OS9Q13438 667 aaPredicted RBP21.8■■□□□ 1.08
CLK3-227ENST00000570296 PRPF38AQ8NAV1 312 aaKnown RBP21.8■■□□□ 1.08
CLK3-227ENST00000570296 CHST13Q8NET6 341 aa21.8■■□□□ 1.08
CLK3-227ENST00000570296 ANTXR1Q9H6X2 564 aa21.8■■□□□ 1.08
CLK3-227ENST00000570296 BAZ2AQ9UIF9 1905 aaKnown RBP21.79■■□□□ 1.08
CLK3-227ENST00000570296 PITPNM1O00562 1244 aa21.79■■□□□ 1.08
CLK3-227ENST00000570296 KCNJ6P48051 423 aa21.79■■□□□ 1.08
CLK3-227ENST00000570296 CPXCR1Q8N123 301 aa21.79■■□□□ 1.08
CLK3-227ENST00000570296 SDR42E1Q8WUS8 393 aa21.79■■□□□ 1.08
CLK3-227ENST00000570296 FTOQ9C0B1 505 aaKnown RBP eCLIP21.79■■□□□ 1.08
CLK3-227ENST00000570296 SUGCTQ9HAC7 445 aa21.79■■□□□ 1.08
CLK3-227ENST00000570296 PRKAG3Q9UGI9 489 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms