RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, human

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDH3-208	ENST00000569036	SUGP1	Q8IWZ8	645 aa	Known RBP	13.79	□□□□□ -0.2
CDH3-208	ENST00000569036	EDA	Q92838	391 aa		13.79	□□□□□ -0.2
CDH3-208	ENST00000569036	ATOH1	Q92858	354 aa	Predicted RBP	13.79	□□□□□ -0.2
CDH3-208	ENST00000569036	XAGE2	Q96GT9	111 aa		13.79	□□□□□ -0.2
CDH3-208	ENST00000569036	USP44	Q9H0E7	712 aa		13.79	□□□□□ -0.2
CDH3-208	ENST00000569036	MTUS1	Q9ULD2	1270 aa		13.79	□□□□□ -0.2
CDH3-208	ENST00000569036	FAM50B	Q9Y247	325 aa		13.79	□□□□□ -0.2
CDH3-208	ENST00000569036	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.79	□□□□□ -0.2
CDH3-208	ENST00000569036	CFAP47	Q6ZTR5	3102 aa		13.79	□□□□□ -0.2
CDH3-208	ENST00000569036	SOWAHB	A6NEL2	793 aa		13.78	□□□□□ -0.2
CDH3-208	ENST00000569036	PROB1	E7EW31	1015 aa		13.78	□□□□□ -0.2
CDH3-208	ENST00000569036	NKX3-2	P78367	333 aa		13.78	□□□□□ -0.2
CDH3-208	ENST00000569036	ACVR2B	Q13705	512 aa		13.78	□□□□□ -0.2
CDH3-208	ENST00000569036	MVP	Q14764	893 aa	Known RBP	13.78	□□□□□ -0.2
CDH3-208	ENST00000569036	SEPT2	Q15019	361 aa		13.78	□□□□□ -0.2
CDH3-208	ENST00000569036	ADGRA1	Q86SQ6	560 aa		13.78	□□□□□ -0.2
CDH3-208	ENST00000569036	CABP5	Q9NP86	173 aa		13.78	□□□□□ -0.2
CDH3-208	ENST00000569036	SERPINB13	Q9UIV8	391 aa		13.78	□□□□□ -0.2
CDH3-208	ENST00000569036		A0A1B0GUL7	405 aa		13.77	□□□□□ -0.21
CDH3-208	ENST00000569036	MED19	A0JLT2	244 aa	Predicted RBP	13.77	□□□□□ -0.21
CDH3-208	ENST00000569036	CABYR	O75952	493 aa		13.77	□□□□□ -0.21
CDH3-208	ENST00000569036	RGS20	O76081	388 aa		13.77	□□□□□ -0.21
CDH3-208	ENST00000569036	NAA16	Q6N069	864 aa	Predicted RBP	13.77	□□□□□ -0.21
CDH3-208	ENST00000569036	RNF135	Q8IUD6	432 aa		13.77	□□□□□ -0.21
CDH3-208	ENST00000569036	SEZ6L	Q9BYH1	1024 aa		13.77	□□□□□ -0.21
CDH3-208	ENST00000569036	EHD4	Q9H223	541 aa		13.77	□□□□□ -0.21
CDH3-208	ENST00000569036	LRP2BP	Q9P2M1	347 aa		13.77	□□□□□ -0.21
CDH3-208	ENST00000569036	PA2G4	Q9UQ80	394 aa	Known RBP	13.77	□□□□□ -0.21
CDH3-208	ENST00000569036	MYO5A	Q9Y4I1	1855 aa	Known RBP	13.76	□□□□□ -0.21
CDH3-208	ENST00000569036	ASTN1	O14525	1302 aa		13.76	□□□□□ -0.21
CDH3-208	ENST00000569036	PRR23A	A6NEV1	266 aa		13.76	□□□□□ -0.21
CDH3-208	ENST00000569036	SHMT1	P34896	483 aa		13.76	□□□□□ -0.21
CDH3-208	ENST00000569036	ERVK-21	P61565	698 aa		13.76	□□□□□ -0.21
CDH3-208	ENST00000569036	TRIM67	Q6ZTA4	783 aa		13.76	□□□□□ -0.21
CDH3-208	ENST00000569036	FBXL6	Q8N531	539 aa		13.76	□□□□□ -0.21
CDH3-208	ENST00000569036	IRF2BPL	Q9H1B7	796 aa		13.76	□□□□□ -0.21
CDH3-208	ENST00000569036	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.76	□□□□□ -0.21
CDH3-208	ENST00000569036	CYP2C9	P11712	490 aa		13.75	□□□□□ -0.21
CDH3-208	ENST00000569036	PSMC6	P62333	389 aa		13.75	□□□□□ -0.21
CDH3-208	ENST00000569036	TMCO2	Q7Z6W1	182 aa	Predicted RBP	13.75	□□□□□ -0.21
CDH3-208	ENST00000569036	TGS1	Q96RS0	853 aa	Known RBP	13.75	□□□□□ -0.21
CDH3-208	ENST00000569036	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.75	□□□□□ -0.21
CDH3-208	ENST00000569036	ABHD16B	Q9H3Z7	469 aa		13.75	□□□□□ -0.21
CDH3-208	ENST00000569036	ADAMTS5	Q9UNA0	930 aa		13.75	□□□□□ -0.21
CDH3-208	ENST00000569036	TRPC6	Q9Y210	931 aa		13.75	□□□□□ -0.21
CDH3-208	ENST00000569036	ZNF292	O60281	2723 aa		13.75	□□□□□ -0.21
CDH3-208	ENST00000569036	CHD6	Q8TD26	2715 aa		13.74	□□□□□ -0.21
CDH3-208	ENST00000569036	CHD8	Q9HCK8	2581 aa		13.74	□□□□□ -0.21
CDH3-208	ENST00000569036	DNAJC25-GNG10	A0A024R161	153 aa		13.74	□□□□□ -0.21
CDH3-208	ENST00000569036	ARID4A	P29374	1257 aa	Predicted RBP	13.74	□□□□□ -0.21
CDH3-208	ENST00000569036	RFC2	P35250	354 aa		13.74	□□□□□ -0.21
CDH3-208	ENST00000569036	STAT3	P40763	770 aa		13.74	□□□□□ -0.21
CDH3-208	ENST00000569036	VCP	P55072	806 aa	Known RBP	13.74	□□□□□ -0.21
CDH3-208	ENST00000569036	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.74	□□□□□ -0.21
CDH3-208	ENST00000569036	SPICE1	Q8N0Z3	855 aa		13.74	□□□□□ -0.21
CDH3-208	ENST00000569036	PABPC5	Q96DU9	382 aa	Known RBP	13.74	□□□□□ -0.21
CDH3-208	ENST00000569036	POP1	Q99575	1024 aa	Known RBP	13.74	□□□□□ -0.21
CDH3-208	ENST00000569036	FSD1	Q9BTV5	496 aa		13.74	□□□□□ -0.21
CDH3-208	ENST00000569036	TRMT13	Q9NUP7	481 aa	Known RBP	13.74	□□□□□ -0.21
CDH3-208	ENST00000569036	ZNF214	Q9UL59	606 aa	Predicted RBP	13.74	□□□□□ -0.21
CDH3-208	ENST00000569036	PKD1L2	Q7Z442	2459 aa		13.74	□□□□□ -0.21
CDH3-208	ENST00000569036	ACACB	O00763	2458 aa		13.73	□□□□□ -0.21
CDH3-208	ENST00000569036	LINC01553	A4QN01	128 aa		13.73	□□□□□ -0.21
CDH3-208	ENST00000569036		H0Y858	1186 aa		13.73	□□□□□ -0.21
CDH3-208	ENST00000569036	BAIAP3	O94812	1187 aa		13.73	□□□□□ -0.21
CDH3-208	ENST00000569036	COPB2	P35606	906 aa		13.73	□□□□□ -0.21
CDH3-208	ENST00000569036	MCAM	P43121	646 aa		13.73	□□□□□ -0.21
CDH3-208	ENST00000569036	KCNJ6	P48051	423 aa		13.73	□□□□□ -0.21
CDH3-208	ENST00000569036	DYNLL1	P63167	89 aa	Known RBP	13.73	□□□□□ -0.21
CDH3-208	ENST00000569036	COL19A1	Q14993	1142 aa		13.73	□□□□□ -0.21
CDH3-208	ENST00000569036	FSCN1	Q16658	493 aa	Known RBP	13.73	□□□□□ -0.21
CDH3-208	ENST00000569036	FGD4	Q96M96	766 aa		13.73	□□□□□ -0.21
CDH3-208	ENST00000569036	FTO	Q9C0B1	505 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
CDH3-208	ENST00000569036	KATNBL1	Q9H079	304 aa		13.73	□□□□□ -0.21
CDH3-208	ENST00000569036	TLR9	Q9NR96	1032 aa		13.73	□□□□□ -0.21
CDH3-208	ENST00000569036	TNKS	O95271	1327 aa		13.72	□□□□□ -0.21
CDH3-208	ENST00000569036	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	13.72	□□□□□ -0.21
CDH3-208	ENST00000569036	WDR5	P61964	334 aa	Known RBP	13.72	□□□□□ -0.21
CDH3-208	ENST00000569036	SMAD2	Q15796	467 aa	Known RBP	13.72	□□□□□ -0.21
CDH3-208	ENST00000569036	EP400NL	Q6ZTU2	488 aa		13.72	□□□□□ -0.21
CDH3-208	ENST00000569036	TLK2	Q86UE8	772 aa		13.72	□□□□□ -0.21
CDH3-208	ENST00000569036	MAGEB6	Q8N7X4	407 aa		13.72	□□□□□ -0.21
CDH3-208	ENST00000569036	REPS2	Q8NFH8	660 aa		13.72	□□□□□ -0.21
CDH3-208	ENST00000569036	MRPL38	Q96DV4	380 aa	Known RBP	13.72	□□□□□ -0.21
CDH3-208	ENST00000569036	DDX11	Q96FC9	970 aa		13.72	□□□□□ -0.21
CDH3-208	ENST00000569036	ZBED2	Q9BTP6	218 aa		13.72	□□□□□ -0.21
CDH3-208	ENST00000569036	FBXO28	Q9NVF7	368 aa		13.72	□□□□□ -0.21
CDH3-208	ENST00000569036	AKAP2	Q9Y2D5	859 aa		13.72	□□□□□ -0.21
CDH3-208	ENST00000569036	VWA5A	O00534	786 aa		13.71	□□□□□ -0.21
CDH3-208	ENST00000569036	MPHOSPH10	O00566	681 aa	Known RBP	13.71	□□□□□ -0.21
CDH3-208	ENST00000569036	WDR46	O15213	610 aa	Known RBP	13.71	□□□□□ -0.21
CDH3-208	ENST00000569036	SUPT20HL2	P0C7V6	817 aa		13.71	□□□□□ -0.21
CDH3-208	ENST00000569036	DEFB103A	P81534	67 aa		13.71	□□□□□ -0.21
CDH3-208	ENST00000569036	TFCP2	Q12800	502 aa		13.71	□□□□□ -0.21
CDH3-208	ENST00000569036	TIGD5	Q53EQ6	642 aa		13.71	□□□□□ -0.21
CDH3-208	ENST00000569036	ARMCX2	Q7L311	632 aa		13.71	□□□□□ -0.21
CDH3-208	ENST00000569036	COPRS	Q9NQ92	184 aa		13.71	□□□□□ -0.21
CDH3-208	ENST00000569036	GNE	Q9Y223	722 aa	Known RBP	13.71	□□□□□ -0.21
CDH3-208	ENST00000569036	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	13.71	□□□□□ -0.21
CDH3-208	ENST00000569036	ATG2A	Q2TAZ0	1938 aa		13.7	□□□□□ -0.22

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