RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 FAM161BQ96MY7 647 aa17.73■□□□□ 0.43
CLN3-236ENST00000568558 ABHD16BQ9H3Z7 469 aa17.73■□□□□ 0.43
CLN3-236ENST00000568558 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.73■□□□□ 0.43
CLN3-236ENST00000568558 CUL9Q8IWT3 2517 aa17.72■□□□□ 0.43
CLN3-236ENST00000568558 A0A0C4DFX4 3053 aa17.72■□□□□ 0.43
CLN3-236ENST00000568558 ADCY6O43306 1168 aa17.72■□□□□ 0.43
CLN3-236ENST00000568558 CST5P28325 142 aaPredicted RBP17.72■□□□□ 0.43
CLN3-236ENST00000568558 KCNA10Q16322 511 aa17.72■□□□□ 0.43
CLN3-236ENST00000568558 CCDC129Q6ZRS4 1044 aa17.72■□□□□ 0.43
CLN3-236ENST00000568558 ARMCX2Q7L311 632 aa17.72■□□□□ 0.43
CLN3-236ENST00000568558 ANKRD33Q7Z3H0 272 aa17.72■□□□□ 0.43
CLN3-236ENST00000568558 FAM160B2Q86V87 743 aa17.72■□□□□ 0.43
CLN3-236ENST00000568558 GMCL1Q96IK5 515 aa17.72■□□□□ 0.43
CLN3-236ENST00000568558 TOX2Q96NM4 488 aa17.72■□□□□ 0.43
CLN3-236ENST00000568558 ACAD9Q9H845 621 aa17.72■□□□□ 0.43
CLN3-236ENST00000568558 HOMER2Q9NSB8 354 aa17.72■□□□□ 0.43
CLN3-236ENST00000568558 ISY1Q9ULR0 285 aaKnown RBP17.72■□□□□ 0.43
CLN3-236ENST00000568558 ZNF536O15090 1300 aa17.72■□□□□ 0.43
CLN3-236ENST00000568558 RAG1P15918 1043 aa17.71■□□□□ 0.43
CLN3-236ENST00000568558 SLC1A4P43007 532 aa17.71■□□□□ 0.43
CLN3-236ENST00000568558 IRX5P78411 483 aaPredicted RBP17.71■□□□□ 0.43
CLN3-236ENST00000568558 CTDSPL2Q05D32 466 aa17.71■□□□□ 0.43
CLN3-236ENST00000568558 FAAP100Q0VG06 881 aa17.71■□□□□ 0.43
CLN3-236ENST00000568558 CCDC144BQ3MJ40 725 aa17.71■□□□□ 0.43
CLN3-236ENST00000568558 PPP4R3BQ5MIZ7 849 aa17.71■□□□□ 0.43
CLN3-236ENST00000568558 FAM133AQ8N9E0 248 aa17.71■□□□□ 0.43
CLN3-236ENST00000568558 CHURC1Q8WUH1 139 aa17.71■□□□□ 0.43
CLN3-236ENST00000568558 STAG1Q8WVM7 1258 aa17.71■□□□□ 0.43
CLN3-236ENST00000568558 KATNBL1Q9H079 304 aa17.71■□□□□ 0.43
CLN3-236ENST00000568558 UPF3AQ9H1J1 476 aaKnown RBP17.71■□□□□ 0.43
CLN3-236ENST00000568558 TMEM39AQ9NV64 488 aa17.71■□□□□ 0.43
CLN3-236ENST00000568558 TSPY2A6NKD2 308 aa17.7■□□□□ 0.42
CLN3-236ENST00000568558 DCDC2CA8MYV0 355 aa17.7■□□□□ 0.42
CLN3-236ENST00000568558 PLA2G6O60733 806 aa17.7■□□□□ 0.42
CLN3-236ENST00000568558 C6orf222P0C671 652 aaPredicted RBP17.7■□□□□ 0.42
CLN3-236ENST00000568558 MCCP23508 829 aa17.7■□□□□ 0.42
CLN3-236ENST00000568558 EPHB4P54760 987 aa17.7■□□□□ 0.42
CLN3-236ENST00000568558 RRP1P56182 461 aaKnown RBP17.7■□□□□ 0.42
CLN3-236ENST00000568558 GJA9P57773 515 aa17.7■□□□□ 0.42
CLN3-236ENST00000568558 SMAD3P84022 425 aaKnown RBP17.7■□□□□ 0.42
CLN3-236ENST00000568558 CNTN2Q02246 1040 aa17.7■□□□□ 0.42
CLN3-236ENST00000568558 IKQ13123 557 aaPredicted RBP17.7■□□□□ 0.42
CLN3-236ENST00000568558 CCDC144CPQ8IYA2 1237 aa17.7■□□□□ 0.42
CLN3-236ENST00000568558 PCSK9Q8NBP7 692 aaKnown RBP17.7■□□□□ 0.42
CLN3-236ENST00000568558 CHMP4CQ96CF2 233 aa17.7■□□□□ 0.42
CLN3-236ENST00000568558 AGBL1Q96MI9 1066 aa17.7■□□□□ 0.42
CLN3-236ENST00000568558 GLT1D1Q96MS3 346 aa17.7■□□□□ 0.42
CLN3-236ENST00000568558 A1CFQ9NQ94 594 aaKnown RBP17.7■□□□□ 0.42
CLN3-236ENST00000568558 IL17RBQ9NRM6 502 aa17.7■□□□□ 0.42
CLN3-236ENST00000568558 RNF146Q9NTX7 359 aa17.7■□□□□ 0.42
CLN3-236ENST00000568558 ANAPC4Q9UJX5 808 aa17.7■□□□□ 0.42
CLN3-236ENST00000568558 STX8Q9UNK0 236 aa17.7■□□□□ 0.42
CLN3-236ENST00000568558 ELP1O95163 1332 aa17.7■□□□□ 0.42
CLN3-236ENST00000568558 NMT2O60551 498 aa17.69■□□□□ 0.42
CLN3-236ENST00000568558 ASGR1P07306 291 aa17.69■□□□□ 0.42
CLN3-236ENST00000568558 FPGSQ05932 587 aa17.69■□□□□ 0.42
CLN3-236ENST00000568558 VPS53Q5VIR6 699 aa17.69■□□□□ 0.42
CLN3-236ENST00000568558 KCTD1Q719H9 257 aa17.69■□□□□ 0.42
CLN3-236ENST00000568558 RASGRP2Q7LDG7 609 aa17.69■□□□□ 0.42
CLN3-236ENST00000568558 SPC25Q9HBM1 224 aa17.69■□□□□ 0.42
CLN3-236ENST00000568558 INCENPQ9NQS7 918 aa17.69■□□□□ 0.42
CLN3-236ENST00000568558 MROH7Q68CQ1 1323 aa17.69■□□□□ 0.42
CLN3-236ENST00000568558 EYSQ5T1H1 3165 aa17.68■□□□□ 0.42
CLN3-236ENST00000568558 TKFCQ3LXA3 575 aa17.68■□□□□ 0.42
CLN3-236ENST00000568558 ANKRD45Q5TZF3 282 aa17.68■□□□□ 0.42
CLN3-236ENST00000568558 RCSD1Q6JBY9 416 aa17.68■□□□□ 0.42
CLN3-236ENST00000568558 EVI5LQ96CN4 794 aa17.68■□□□□ 0.42
CLN3-236ENST00000568558 RNPC3Q96LT9 517 aaKnown RBP17.68■□□□□ 0.42
CLN3-236ENST00000568558 TRERF1Q96PN7 1200 aa17.68■□□□□ 0.42
CLN3-236ENST00000568558 SEMA6BQ9H3T3 888 aa17.68■□□□□ 0.42
CLN3-236ENST00000568558 ZBTB47Q9UFB7 747 aaPredicted RBP17.68■□□□□ 0.42
CLN3-236ENST00000568558 TBX21Q9UL17 535 aa17.68■□□□□ 0.42
CLN3-236ENST00000568558 LAMA4Q16363 1823 aa17.68■□□□□ 0.42
CLN3-236ENST00000568558 SOWAHBA6NEL2 793 aa17.67■□□□□ 0.42
CLN3-236ENST00000568558 CTAGE5O15320 804 aa17.67■□□□□ 0.42
CLN3-236ENST00000568558 ORC4O43929 436 aa17.67■□□□□ 0.42
CLN3-236ENST00000568558 RANBP6O60518 1105 aaKnown RBP17.67■□□□□ 0.42
CLN3-236ENST00000568558 ALAS1P13196 640 aa17.67■□□□□ 0.42
CLN3-236ENST00000568558 NOVP48745 357 aa17.67■□□□□ 0.42
CLN3-236ENST00000568558 CDK7P50613 346 aa17.67■□□□□ 0.42
CLN3-236ENST00000568558 NKX3-2P78367 333 aa17.67■□□□□ 0.42
CLN3-236ENST00000568558 CDX2Q99626 313 aaPredicted RBP17.67■□□□□ 0.42
CLN3-236ENST00000568558 TTYH1Q9H313 450 aaPredicted RBP17.67■□□□□ 0.42
CLN3-236ENST00000568558 HELLSQ9NRZ9 838 aa17.67■□□□□ 0.42
CLN3-236ENST00000568558 PRR12Q9ULL5 1215 aa17.67■□□□□ 0.42
CLN3-236ENST00000568558 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.66■□□□□ 0.42
CLN3-236ENST00000568558 ASB14A6NK59 587 aa17.66■□□□□ 0.42
CLN3-236ENST00000568558 TIMP1P01033 207 aa17.66■□□□□ 0.42
CLN3-236ENST00000568558 FGRP09769 529 aa17.66■□□□□ 0.42
CLN3-236ENST00000568558 PDE1AP54750 535 aa17.66■□□□□ 0.42
CLN3-236ENST00000568558 SNAP25P60880 206 aa17.66■□□□□ 0.42
CLN3-236ENST00000568558 ALX1Q15699 326 aa17.66■□□□□ 0.42
CLN3-236ENST00000568558 GNASQ5JWF2 1037 aa17.66■□□□□ 0.42
CLN3-236ENST00000568558 CCDC174Q6PII3 467 aa17.66■□□□□ 0.42
CLN3-236ENST00000568558 CRBNQ96SW2 442 aa17.66■□□□□ 0.42
CLN3-236ENST00000568558 GBF1Q92538 1859 aa17.66■□□□□ 0.42
CLN3-236ENST00000568558 ASTN1O14525 1302 aa17.66■□□□□ 0.42
CLN3-236ENST00000568558 A0A0U1RQG5 324 aaPredicted RBP17.65■□□□□ 0.42
CLN3-236ENST00000568558 ARVCFO00192 962 aa17.65■□□□□ 0.42
CLN3-236ENST00000568558 TNFAIP2Q03169 654 aa17.65■□□□□ 0.42
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