RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 TTF1Q15361 905 aaPredicted RBP19.51■□□□□ 0.71
CLK3-223ENST00000568488 TMEM67Q5HYA8 995 aa19.51■□□□□ 0.71
CLK3-223ENST00000568488 KRT40Q6A162 431 aa19.51■□□□□ 0.71
CLK3-223ENST00000568488 NUP88Q99567 741 aaPredicted RBP19.51■□□□□ 0.71
CLK3-223ENST00000568488 SLF1Q9BQI6 1058 aa19.51■□□□□ 0.71
CLK3-223ENST00000568488 KANSL2Q9H9L4 492 aa19.51■□□□□ 0.71
CLK3-223ENST00000568488 NOP58Q9Y2X3 529 aaKnown RBP19.51■□□□□ 0.71
CLK3-223ENST00000568488 CYP2D7A0A087X1C5 515 aa19.5■□□□□ 0.71
CLK3-223ENST00000568488 PRKAB2O43741 272 aa19.5■□□□□ 0.71
CLK3-223ENST00000568488 GPR37L1O60883 481 aa19.5■□□□□ 0.71
CLK3-223ENST00000568488 CA3P07451 260 aa19.5■□□□□ 0.71
CLK3-223ENST00000568488 ITGA7Q13683 1181 aa19.5■□□□□ 0.71
CLK3-223ENST00000568488 ARMCX2Q7L311 632 aa19.5■□□□□ 0.71
CLK3-223ENST00000568488 AACSQ86V21 672 aa19.5■□□□□ 0.71
CLK3-223ENST00000568488 TMEM57Q8N5G2 664 aa19.5■□□□□ 0.71
CLK3-223ENST00000568488 SLC43A3Q8NBI5 491 aa19.5■□□□□ 0.71
CLK3-223ENST00000568488 KHSRPQ92945 711 aaKnown RBP eCLIP19.5■□□□□ 0.71
CLK3-223ENST00000568488 SCLYQ96I15 445 aa19.5■□□□□ 0.71
CLK3-223ENST00000568488 NOC4LQ9BVI4 516 aaKnown RBP19.5■□□□□ 0.71
CLK3-223ENST00000568488 CTAGE5O15320 804 aa19.49■□□□□ 0.71
CLK3-223ENST00000568488 ZBED4O75132 1171 aa19.49■□□□□ 0.71
CLK3-223ENST00000568488 TNFAIP2Q03169 654 aa19.49■□□□□ 0.71
CLK3-223ENST00000568488 AMOTL1Q8IY63 956 aa19.49■□□□□ 0.71
CLK3-223ENST00000568488 CCDC144CPQ8IYA2 1237 aa19.49■□□□□ 0.71
CLK3-223ENST00000568488 ARNTL2Q8WYA1 636 aa19.49■□□□□ 0.71
CLK3-223ENST00000568488 HLA-CQ95604 372 aa19.49■□□□□ 0.71
CLK3-223ENST00000568488 WNT8AQ9H1J5 351 aa19.49■□□□□ 0.71
CLK3-223ENST00000568488 C11orf16Q9NQ32 467 aa19.49■□□□□ 0.71
CLK3-223ENST00000568488 PRRC2BQ5JSZ5 2229 aaKnown RBP19.48■□□□□ 0.71
CLK3-223ENST00000568488 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.48■□□□□ 0.71
CLK3-223ENST00000568488 B4GALT4O60513 344 aa19.48■□□□□ 0.71
CLK3-223ENST00000568488 CABYRO75952 493 aa19.48■□□□□ 0.71
CLK3-223ENST00000568488 POU3F3P20264 500 aaPredicted RBP19.48■□□□□ 0.71
CLK3-223ENST00000568488 AP5M1Q9H0R1 490 aa19.48■□□□□ 0.71
CLK3-223ENST00000568488 RAVER2Q9HCJ3 691 aaKnown RBP19.48■□□□□ 0.71
CLK3-223ENST00000568488 MYH8P13535 1937 aa19.47■□□□□ 0.71
CLK3-223ENST00000568488 EPOPA6NHQ4 379 aa19.47■□□□□ 0.71
CLK3-223ENST00000568488 USP17L12C9JPN9 530 aa19.47■□□□□ 0.71
CLK3-223ENST00000568488 USP17L21D6R901 530 aa19.47■□□□□ 0.71
CLK3-223ENST00000568488 GOLIM4O00461 696 aa19.47■□□□□ 0.71
CLK3-223ENST00000568488 TTLL4Q14679 1199 aa19.47■□□□□ 0.71
CLK3-223ENST00000568488 C12orf60Q5U649 245 aa19.47■□□□□ 0.71
CLK3-223ENST00000568488 DEFB128Q7Z7B8 93 aa19.47■□□□□ 0.71
CLK3-223ENST00000568488 PRPF38AQ8NAV1 312 aaKnown RBP19.47■□□□□ 0.71
CLK3-223ENST00000568488 FGD4Q96M96 766 aa19.47■□□□□ 0.71
CLK3-223ENST00000568488 DNAJC2Q99543 621 aaKnown RBP19.47■□□□□ 0.71
CLK3-223ENST00000568488 ATP8A2Q9NTI2 1148 aa19.47■□□□□ 0.71
CLK3-223ENST00000568488 GRIN2DO15399 1336 aa19.47■□□□□ 0.71
CLK3-223ENST00000568488 TCRBV5S4A2TA0A5A2 114 aa19.46■□□□□ 0.71
CLK3-223ENST00000568488 DYNC1LI2O43237 492 aaPredicted RBP19.46■□□□□ 0.71
CLK3-223ENST00000568488 MBD4O95243 580 aa19.46■□□□□ 0.71
CLK3-223ENST00000568488 PSMC6P62333 389 aa19.46■□□□□ 0.71
CLK3-223ENST00000568488 FSCN1Q16658 493 aaKnown RBP19.46■□□□□ 0.71
CLK3-223ENST00000568488 C16orf86Q6ZW13 317 aa19.46■□□□□ 0.71
CLK3-223ENST00000568488 KIFC2Q96AC6 838 aa19.46■□□□□ 0.71
CLK3-223ENST00000568488 ASTN1O14525 1302 aa19.46■□□□□ 0.71
CLK3-223ENST00000568488 TRANK1O15050 2925 aa19.45■□□□□ 0.7
CLK3-223ENST00000568488 F5H6K3 240 aa19.45■□□□□ 0.7
CLK3-223ENST00000568488 ZEB2O60315 1214 aa19.45■□□□□ 0.7
CLK3-223ENST00000568488 NKX3-2P78367 333 aa19.45■□□□□ 0.7
CLK3-223ENST00000568488 CNTN2Q02246 1040 aa19.45■□□□□ 0.7
CLK3-223ENST00000568488 KLRC3Q07444 240 aa19.45■□□□□ 0.7
CLK3-223ENST00000568488 SLFNL1Q499Z3 407 aa19.45■□□□□ 0.7
CLK3-223ENST00000568488 TLK2Q86UE8 772 aa19.45■□□□□ 0.7
CLK3-223ENST00000568488 DDRGK1Q96HY6 314 aa19.45■□□□□ 0.7
CLK3-223ENST00000568488 KATNBL1Q9H079 304 aa19.45■□□□□ 0.7
CLK3-223ENST00000568488 BCL11AQ9H165 835 aa19.45■□□□□ 0.7
CLK3-223ENST00000568488 PTGS1P23219 599 aa19.44■□□□□ 0.7
CLK3-223ENST00000568488 VWCEQ96DN2 955 aa19.44■□□□□ 0.7
CLK3-223ENST00000568488 AGBL1Q96MI9 1066 aa19.44■□□□□ 0.7
CLK3-223ENST00000568488 SEZ6LQ9BYH1 1024 aa19.44■□□□□ 0.7
CLK3-223ENST00000568488 HOMER2Q9NSB8 354 aa19.44■□□□□ 0.7
CLK3-223ENST00000568488 FBXO40Q9UH90 709 aa19.44■□□□□ 0.7
CLK3-223ENST00000568488 EXOC6BQ9Y2D4 811 aa19.44■□□□□ 0.7
CLK3-223ENST00000568488 LRRC37A2A6NM11 1700 aa19.44■□□□□ 0.7
CLK3-223ENST00000568488 MCM3APO60318 1980 aa19.44■□□□□ 0.7
CLK3-223ENST00000568488 PI4K2BG5E9Z4 385 aa19.43■□□□□ 0.7
CLK3-223ENST00000568488 ATP2A1O14983 1001 aa19.43■□□□□ 0.7
CLK3-223ENST00000568488 CYP2C9P11712 490 aa19.43■□□□□ 0.7
CLK3-223ENST00000568488 ACTN1P12814 892 aa19.43■□□□□ 0.7
CLK3-223ENST00000568488 TAP1Q03518 808 aa19.43■□□□□ 0.7
CLK3-223ENST00000568488 STK11IPQ8N1F8 1099 aa19.43■□□□□ 0.7
CLK3-223ENST00000568488 CHST13Q8NET6 341 aa19.43■□□□□ 0.7
CLK3-223ENST00000568488 UIMC1Q96RL1 719 aa19.43■□□□□ 0.7
CLK3-223ENST00000568488 IL1RAPL2Q9NP60 686 aa19.43■□□□□ 0.7
CLK3-223ENST00000568488 CD320Q9NPF0 282 aa19.43■□□□□ 0.7
CLK3-223ENST00000568488 ZNF316A6NFI3 1004 aaPredicted RBP19.42■□□□□ 0.7
CLK3-223ENST00000568488 KIF28PB7ZC32 967 aa19.42■□□□□ 0.7
CLK3-223ENST00000568488 NDUFB10O96000 172 aa19.42■□□□□ 0.7
CLK3-223ENST00000568488 PFKMP08237 780 aa19.42■□□□□ 0.7
CLK3-223ENST00000568488 GRB10Q13322 594 aa19.42■□□□□ 0.7
CLK3-223ENST00000568488 ERC1Q8IUD2 1116 aa19.42■□□□□ 0.7
CLK3-223ENST00000568488 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.42■□□□□ 0.7
CLK3-223ENST00000568488 GNEQ9Y223 722 aaKnown RBP19.42■□□□□ 0.7
CLK3-223ENST00000568488 MUC6Q6W4X9 2439 aa19.42■□□□□ 0.7
CLK3-223ENST00000568488 SMPD1P17405 629 aa19.41■□□□□ 0.7
CLK3-223ENST00000568488 SLC9A7Q96T83 725 aa19.41■□□□□ 0.7
CLK3-223ENST00000568488 ALDH8A1Q9H2A2 487 aaPredicted RBP19.41■□□□□ 0.7
CLK3-223ENST00000568488 SLC38A10Q9HBR0 1119 aa19.41■□□□□ 0.7
CLK3-223ENST00000568488 TRMT13Q9NUP7 481 aaKnown RBP19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms