RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 DEFB123Q8N688 67 aa17.67■□□□□ 0.42
VPS39-210ENST00000568357 ENAHQ8N8S7 591 aaPredicted RBP17.67■□□□□ 0.42
VPS39-210ENST00000568357 TRPV1Q8NER1 839 aa17.67■□□□□ 0.42
VPS39-210ENST00000568357 AGBL1Q96MI9 1066 aa17.67■□□□□ 0.42
VPS39-210ENST00000568357 ESYT1Q9BSJ8 1104 aa17.67■□□□□ 0.42
VPS39-210ENST00000568357 CNNM2Q9H8M5 875 aa17.67■□□□□ 0.42
VPS39-210ENST00000568357 GPCPD1Q9NPB8 672 aa17.67■□□□□ 0.42
VPS39-210ENST00000568357 FRMPD2Q68DX3 1309 aaPredicted RBP17.67■□□□□ 0.42
VPS39-210ENST00000568357 SNHG28P0DPA3 235 aa17.66■□□□□ 0.42
VPS39-210ENST00000568357 ZNF792Q3KQV3 632 aa17.66■□□□□ 0.42
VPS39-210ENST00000568357 CCDC178Q5BJE1 867 aa17.66■□□□□ 0.42
VPS39-210ENST00000568357 LHX8Q68G74 356 aa17.66■□□□□ 0.42
VPS39-210ENST00000568357 CYB5R4Q7L1T6 521 aa17.66■□□□□ 0.42
VPS39-210ENST00000568357 MAML3Q96JK9 1138 aa17.66■□□□□ 0.42
VPS39-210ENST00000568357 LSG1Q9H089 658 aaKnown RBP17.66■□□□□ 0.42
VPS39-210ENST00000568357 SLC5A4Q9NY91 659 aa17.66■□□□□ 0.42
VPS39-210ENST00000568357 STXBP5LQ9Y2K9 1186 aa17.66■□□□□ 0.42
VPS39-210ENST00000568357 ZNF543Q08ER8 600 aa17.65■□□□□ 0.42
VPS39-210ENST00000568357 PRAMEF19Q5SWL8 479 aa17.65■□□□□ 0.42
VPS39-210ENST00000568357 CCDC174Q6PII3 467 aa17.65■□□□□ 0.42
VPS39-210ENST00000568357 KIAA1211Q6ZU35 1233 aa17.65■□□□□ 0.42
VPS39-210ENST00000568357 STOX1Q6ZVD7 989 aa17.65■□□□□ 0.42
VPS39-210ENST00000568357 OGDHLQ9ULD0 1010 aa17.65■□□□□ 0.42
VPS39-210ENST00000568357 RBM8AQ9Y5S9 174 aaKnown RBP17.65■□□□□ 0.42
VPS39-210ENST00000568357 TNKSO95271 1327 aa17.65■□□□□ 0.42
VPS39-210ENST00000568357 COL11A1P12107 1806 aaPredicted RBP17.64■□□□□ 0.41
VPS39-210ENST00000568357 DNAJC25-GNG10A0A024R161 153 aa17.64■□□□□ 0.41
VPS39-210ENST00000568357 E7EWF7 191 aa17.64■□□□□ 0.41
VPS39-210ENST00000568357 GOLGA8HP0CJ92 632 aa17.64■□□□□ 0.41
VPS39-210ENST00000568357 CAPN2P17655 700 aa17.64■□□□□ 0.41
VPS39-210ENST00000568357 SYDE2Q5VT97 1194 aa17.64■□□□□ 0.41
VPS39-210ENST00000568357 PNMA1Q8ND90 353 aa17.64■□□□□ 0.41
VPS39-210ENST00000568357 CHST13Q8NET6 341 aa17.64■□□□□ 0.41
VPS39-210ENST00000568357 HOMER2Q9NSB8 354 aa17.64■□□□□ 0.41
VPS39-210ENST00000568357 DIS3Q9Y2L1 958 aaKnown RBP17.64■□□□□ 0.41
VPS39-210ENST00000568357 CYBAP13498 195 aa17.63■□□□□ 0.41
VPS39-210ENST00000568357 TAL1P17542 331 aaPredicted RBP17.63■□□□□ 0.41
VPS39-210ENST00000568357 CNGA1P29973 690 aa17.63■□□□□ 0.41
VPS39-210ENST00000568357 TRDNQ13061 729 aa17.63■□□□□ 0.41
VPS39-210ENST00000568357 SEC23AQ15436 765 aa17.63■□□□□ 0.41
VPS39-210ENST00000568357 GPR153Q6NV75 609 aa17.63■□□□□ 0.41
VPS39-210ENST00000568357 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.63■□□□□ 0.41
VPS39-210ENST00000568357 DIS3LQ8TF46 1054 aaKnown RBP17.63■□□□□ 0.41
VPS39-210ENST00000568357 DDX11Q96FC9 970 aa17.63■□□□□ 0.41
VPS39-210ENST00000568357 PAWRQ96IZ0 340 aaKnown RBP17.63■□□□□ 0.41
VPS39-210ENST00000568357 GDF15Q99988 308 aa17.63■□□□□ 0.41
VPS39-210ENST00000568357 UBAC1Q9BSL1 405 aa17.63■□□□□ 0.41
VPS39-210ENST00000568357 RANBP17Q9H2T7 1088 aaKnown RBP17.63■□□□□ 0.41
VPS39-210ENST00000568357 KAT14Q9H8E8 782 aa17.63■□□□□ 0.41
VPS39-210ENST00000568357 FBXO40Q9UH90 709 aa17.63■□□□□ 0.41
VPS39-210ENST00000568357 ALAS1P13196 640 aa17.62■□□□□ 0.41
VPS39-210ENST00000568357 ANKRD35Q8N283 1001 aa17.62■□□□□ 0.41
VPS39-210ENST00000568357 TRERF1Q96PN7 1200 aa17.62■□□□□ 0.41
VPS39-210ENST00000568357 TINF2Q9BSI4 451 aa17.62■□□□□ 0.41
VPS39-210ENST00000568357 CPVLQ9H3G5 476 aa17.62■□□□□ 0.41
VPS39-210ENST00000568357 RNF146Q9NTX7 359 aa17.62■□□□□ 0.41
VPS39-210ENST00000568357 ZNF236Q9UL36 1845 aa17.62■□□□□ 0.41
VPS39-210ENST00000568357 LAMA4Q16363 1823 aa17.61■□□□□ 0.41
VPS39-210ENST00000568357 ICAM1P05362 532 aa17.61■□□□□ 0.41
VPS39-210ENST00000568357 NECTIN1Q15223 517 aa17.61■□□□□ 0.41
VPS39-210ENST00000568357 MUM1L1Q5H9M0 696 aa17.61■□□□□ 0.41
VPS39-210ENST00000568357 CHST3Q7LGC8 479 aa17.61■□□□□ 0.41
VPS39-210ENST00000568357 ANKLE1Q8NAG6 615 aa17.61■□□□□ 0.41
VPS39-210ENST00000568357 NCOA7Q8NI08 942 aa17.61■□□□□ 0.41
VPS39-210ENST00000568357 UBA5Q9GZZ9 404 aa17.61■□□□□ 0.41
VPS39-210ENST00000568357 ACAD9Q9H845 621 aa17.61■□□□□ 0.41
VPS39-210ENST00000568357 SENP2Q9HC62 589 aa17.61■□□□□ 0.41
VPS39-210ENST00000568357 ANO2Q9NQ90 1003 aa17.61■□□□□ 0.41
VPS39-210ENST00000568357 MTMR10Q9NXD2 777 aa17.61■□□□□ 0.41
VPS39-210ENST00000568357 DDX20Q9UHI6 824 aaKnown RBP17.61■□□□□ 0.41
VPS39-210ENST00000568357 CCPG1Q9ULG6 757 aa17.61■□□□□ 0.41
VPS39-210ENST00000568357 BMP8BP34820 402 aa17.6■□□□□ 0.41
VPS39-210ENST00000568357 TKFCQ3LXA3 575 aa17.6■□□□□ 0.41
VPS39-210ENST00000568357 GPATCH4Q5T3I0 446 aaKnown RBP17.6■□□□□ 0.41
VPS39-210ENST00000568357 IFIT1BQ5T764 474 aaKnown RBP17.6■□□□□ 0.41
VPS39-210ENST00000568357 RALYLQ86SE5 291 aaKnown RBP17.6■□□□□ 0.41
VPS39-210ENST00000568357 FGD4Q96M96 766 aa17.6■□□□□ 0.41
VPS39-210ENST00000568357 A1CFQ9NQ94 594 aaKnown RBP17.6■□□□□ 0.41
VPS39-210ENST00000568357 ZMYND8Q9ULU4 1186 aaPredicted RBP17.6■□□□□ 0.41
VPS39-210ENST00000568357 IFIT3O14879 490 aaKnown RBP17.59■□□□□ 0.41
VPS39-210ENST00000568357 SLC27A2O14975 620 aa17.59■□□□□ 0.41
VPS39-210ENST00000568357 CDC45O75419 566 aa17.59■□□□□ 0.41
VPS39-210ENST00000568357 SNAI1O95863 264 aaPredicted RBP17.59■□□□□ 0.41
VPS39-210ENST00000568357 CENPBP07199 599 aaPredicted RBP17.59■□□□□ 0.41
VPS39-210ENST00000568357 ANTXR2P58335 489 aa17.59■□□□□ 0.41
VPS39-210ENST00000568357 CNTN2Q02246 1040 aa17.59■□□□□ 0.41
VPS39-210ENST00000568357 COL9A3Q14050 684 aaPredicted RBP17.59■□□□□ 0.41
VPS39-210ENST00000568357 ANO1Q5XXA6 986 aa17.59■□□□□ 0.41
VPS39-210ENST00000568357 MAMDC4Q6UXC1 1216 aa17.59■□□□□ 0.41
VPS39-210ENST00000568357 NECAB2Q7Z6G3 386 aa17.59■□□□□ 0.41
VPS39-210ENST00000568357 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.59■□□□□ 0.41
VPS39-210ENST00000568357 MB21D2Q8IYB1 491 aaPredicted RBP17.59■□□□□ 0.41
VPS39-210ENST00000568357 C7orf61Q8IZ16 206 aa17.59■□□□□ 0.41
VPS39-210ENST00000568357 PPP4R2Q9NY27 417 aa17.59■□□□□ 0.41
VPS39-210ENST00000568357 SEPT4O43236 478 aa17.58■□□□□ 0.4
VPS39-210ENST00000568357 PARP1P09874 1014 aaKnown RBP17.58■□□□□ 0.4
VPS39-210ENST00000568357 ZNF865P0CJ78 1059 aaPredicted RBP17.58■□□□□ 0.4
VPS39-210ENST00000568357 CREB3L3Q68CJ9 461 aa17.58■□□□□ 0.4
VPS39-210ENST00000568357 ZNF467Q7Z7K2 595 aaPredicted RBP17.58■□□□□ 0.4
VPS39-210ENST00000568357 STAG2Q8N3U4 1231 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms