RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 SLC43A3Q8NBI5 491 aa14.27□□□□□ -0.13
CLK3-222ENST00000568232 ARNTL2Q8WYA1 636 aa14.27□□□□□ -0.13
CLK3-222ENST00000568232 DDX11Q96FC9 970 aa14.27□□□□□ -0.13
CLK3-222ENST00000568232 NOC4LQ9BVI4 516 aaKnown RBP14.27□□□□□ -0.13
CLK3-222ENST00000568232 CCDC8Q9H0W5 538 aaPredicted RBP14.27□□□□□ -0.13
CLK3-222ENST00000568232 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.27□□□□□ -0.13
CLK3-222ENST00000568232 DBNLQ9UJU6 430 aaKnown RBP14.27□□□□□ -0.13
CLK3-222ENST00000568232 PPP1R9AQ9ULJ8 1098 aa14.27□□□□□ -0.13
CLK3-222ENST00000568232 COL11A1P12107 1806 aaPredicted RBP14.27□□□□□ -0.13
CLK3-222ENST00000568232 PRRC2BQ5JSZ5 2229 aaKnown RBP14.26□□□□□ -0.13
CLK3-222ENST00000568232 GRIN2DO15399 1336 aa14.26□□□□□ -0.13
CLK3-222ENST00000568232 DNAJC25-GNG10A0A024R161 153 aa14.26□□□□□ -0.13
CLK3-222ENST00000568232 PTGS1P23219 599 aa14.26□□□□□ -0.13
CLK3-222ENST00000568232 SLC4A3P48751 1232 aa14.26□□□□□ -0.13
CLK3-222ENST00000568232 SDR42E1Q8WUS8 393 aa14.26□□□□□ -0.13
CLK3-222ENST00000568232 MAGEB6P1A0A0J9YX57 407 aa14.25□□□□□ -0.13
CLK3-222ENST00000568232 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.25□□□□□ -0.13
CLK3-222ENST00000568232 PRR33A8MZF0 331 aa14.25□□□□□ -0.13
CLK3-222ENST00000568232 RAD21O60216 631 aa14.25□□□□□ -0.13
CLK3-222ENST00000568232 B4GALT4O60513 344 aa14.25□□□□□ -0.13
CLK3-222ENST00000568232 GNAI2P04899 355 aa14.25□□□□□ -0.13
CLK3-222ENST00000568232 EEF2P13639 858 aaKnown RBP14.25□□□□□ -0.13
CLK3-222ENST00000568232 OS9Q13438 667 aaPredicted RBP14.25□□□□□ -0.13
CLK3-222ENST00000568232 ITGA7Q13683 1181 aa14.25□□□□□ -0.13
CLK3-222ENST00000568232 FAM83BQ5T0W9 1011 aa14.25□□□□□ -0.13
CLK3-222ENST00000568232 SNRNP48Q6IEG0 339 aaKnown RBP14.25□□□□□ -0.13
CLK3-222ENST00000568232 SPRED2Q7Z698 418 aa14.25□□□□□ -0.13
CLK3-222ENST00000568232 RPUSD2Q8IZ73 545 aaKnown RBP14.25□□□□□ -0.13
CLK3-222ENST00000568232 FGD4Q96M96 766 aa14.25□□□□□ -0.13
CLK3-222ENST00000568232 UIMC1Q96RL1 719 aa14.25□□□□□ -0.13
CLK3-222ENST00000568232 SH2D4AQ9H788 454 aa14.25□□□□□ -0.13
CLK3-222ENST00000568232 PARP14Q460N5 1801 aa14.25□□□□□ -0.13
CLK3-222ENST00000568232 ASTN1O14525 1302 aa14.24□□□□□ -0.13
CLK3-222ENST00000568232 COPB2P35606 906 aa14.24□□□□□ -0.13
CLK3-222ENST00000568232 PSMC6P62333 389 aa14.24□□□□□ -0.13
CLK3-222ENST00000568232 NHLH1Q02575 133 aa14.24□□□□□ -0.13
CLK3-222ENST00000568232 TAP1Q03518 808 aa14.24□□□□□ -0.13
CLK3-222ENST00000568232 GRB10Q13322 594 aa14.24□□□□□ -0.13
CLK3-222ENST00000568232 DEFB128Q7Z7B8 93 aa14.24□□□□□ -0.13
CLK3-222ENST00000568232 AGBL1Q96MI9 1066 aa14.24□□□□□ -0.13
CLK3-222ENST00000568232 CRNKL1Q9BZJ0 848 aaKnown RBP14.24□□□□□ -0.13
CLK3-222ENST00000568232 ABHD16BQ9H3Z7 469 aa14.24□□□□□ -0.13
CLK3-222ENST00000568232 DCP1AQ9NPI6 582 aaPredicted RBP14.24□□□□□ -0.13
CLK3-222ENST00000568232 TNNQ9UQP3 1299 aa14.24□□□□□ -0.13
CLK3-222ENST00000568232 LPXNO60711 386 aa14.23□□□□□ -0.13
CLK3-222ENST00000568232 ARMCX2Q7L311 632 aa14.23□□□□□ -0.13
CLK3-222ENST00000568232 ZNF467Q7Z7K2 595 aaPredicted RBP14.23□□□□□ -0.13
CLK3-222ENST00000568232 EAF2Q96CJ1 260 aaPredicted RBP14.23□□□□□ -0.13
CLK3-222ENST00000568232 NUP88Q99567 741 aaPredicted RBP14.23□□□□□ -0.13
CLK3-222ENST00000568232 TEX13BQ9BXU2 312 aa14.23□□□□□ -0.13
CLK3-222ENST00000568232 KATNBL1Q9H079 304 aa14.23□□□□□ -0.13
CLK3-222ENST00000568232 CYP2D7A0A087X1C5 515 aa14.22□□□□□ -0.13
CLK3-222ENST00000568232 SURF6O75683 361 aaKnown RBP14.22□□□□□ -0.13
CLK3-222ENST00000568232 NKX3-2P78367 333 aa14.22□□□□□ -0.13
CLK3-222ENST00000568232 NOL8Q76FK4 1167 aaKnown RBP14.22□□□□□ -0.13
CLK3-222ENST00000568232 CCDC144CPQ8IYA2 1237 aa14.22□□□□□ -0.13
CLK3-222ENST00000568232 CPXCR1Q8N123 301 aa14.22□□□□□ -0.13
CLK3-222ENST00000568232 FBXL18Q96ME1 805 aa14.22□□□□□ -0.13
CLK3-222ENST00000568232 SWAP70Q9UH65 585 aa14.22□□□□□ -0.13
CLK3-222ENST00000568232 NAV1Q8NEY1 1877 aa14.21□□□□□ -0.13
CLK3-222ENST00000568232 ANP32CO43423 234 aa14.21□□□□□ -0.13
CLK3-222ENST00000568232 BCAR3O75815 825 aa14.21□□□□□ -0.13
CLK3-222ENST00000568232 CYP2C9P11712 490 aa14.21□□□□□ -0.13
CLK3-222ENST00000568232 CDK8P49336 464 aa14.21□□□□□ -0.13
CLK3-222ENST00000568232 TNFAIP2Q03169 654 aa14.21□□□□□ -0.13
CLK3-222ENST00000568232 FSCN1Q16658 493 aaKnown RBP14.21□□□□□ -0.13
CLK3-222ENST00000568232 GJD3Q8N144 294 aa14.21□□□□□ -0.13
CLK3-222ENST00000568232 LCORLQ8N3X6 602 aa14.21□□□□□ -0.13
CLK3-222ENST00000568232 DDX49Q9Y6V7 483 aaKnown RBP14.21□□□□□ -0.13
CLK3-222ENST00000568232 PRKAB2O43741 272 aa14.2□□□□□ -0.14
CLK3-222ENST00000568232 CABYRO75952 493 aa14.2□□□□□ -0.14
CLK3-222ENST00000568232 PDE6AP16499 860 aa14.2□□□□□ -0.14
CLK3-222ENST00000568232 CNTN2Q02246 1040 aa14.2□□□□□ -0.14
CLK3-222ENST00000568232 TMEM63BQ5T3F8 832 aa14.2□□□□□ -0.14
CLK3-222ENST00000568232 SLC9C2Q5TAH2 1124 aa14.2□□□□□ -0.14
CLK3-222ENST00000568232 TLK2Q86UE8 772 aa14.2□□□□□ -0.14
CLK3-222ENST00000568232 FAM178BQ8IXR5 827 aa14.2□□□□□ -0.14
CLK3-222ENST00000568232 ANKRD35Q8N283 1001 aa14.2□□□□□ -0.14
CLK3-222ENST00000568232 ANKS1AQ92625 1134 aa14.2□□□□□ -0.14
CLK3-222ENST00000568232 SLF1Q9BQI6 1058 aa14.2□□□□□ -0.14
CLK3-222ENST00000568232 RAVER2Q9HCJ3 691 aaKnown RBP14.2□□□□□ -0.14
CLK3-222ENST00000568232 GOPCQ9HD26 462 aa14.2□□□□□ -0.14
CLK3-222ENST00000568232 TRMT13Q9NUP7 481 aaKnown RBP14.2□□□□□ -0.14
CLK3-222ENST00000568232 GNEQ9Y223 722 aaKnown RBP14.2□□□□□ -0.14
CLK3-222ENST00000568232 USP34Q70CQ2 3546 aa14.2□□□□□ -0.14
CLK3-222ENST00000568232 ZNF532Q9HCE3 1301 aa14.19□□□□□ -0.14
CLK3-222ENST00000568232 DYNC1LI2O43237 492 aaPredicted RBP14.19□□□□□ -0.14
CLK3-222ENST00000568232 SSTR3P32745 418 aaPredicted RBP14.19□□□□□ -0.14
CLK3-222ENST00000568232 HERC6Q8IVU3 1022 aa14.19□□□□□ -0.14
CLK3-222ENST00000568232 TRMT2AQ8IZ69 625 aaKnown RBP14.19□□□□□ -0.14
CLK3-222ENST00000568232 SSH3Q8TE77 659 aa14.19□□□□□ -0.14
CLK3-222ENST00000568232 ARHGAP45Q92619 1136 aa14.19□□□□□ -0.14
CLK3-222ENST00000568232 CCDC17Q96LX7 622 aa14.19□□□□□ -0.14
CLK3-222ENST00000568232 ALDH8A1Q9H2A2 487 aaPredicted RBP14.19□□□□□ -0.14
CLK3-222ENST00000568232 ARMT1Q9H993 441 aa14.19□□□□□ -0.14
CLK3-222ENST00000568232 KANSL2Q9H9L4 492 aa14.19□□□□□ -0.14
CLK3-222ENST00000568232 LCHNA4D1U4 455 aa14.18□□□□□ -0.14
CLK3-222ENST00000568232 PFKMP08237 780 aa14.18□□□□□ -0.14
CLK3-222ENST00000568232 IL9P15248 144 aa14.18□□□□□ -0.14
CLK3-222ENST00000568232 SMPD1P17405 629 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms