RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 DNAJC18Q9H819 358 aa22.95■■□□□ 1.26
CLN3-230ENST00000568076 GPCPD1Q9NPB8 672 aa22.95■■□□□ 1.26
CLN3-230ENST00000568076 ZNF219Q9P2Y4 722 aaPredicted RBP22.95■■□□□ 1.26
CLN3-230ENST00000568076 BIN2Q9UBW5 565 aaPredicted RBP22.95■■□□□ 1.26
CLN3-230ENST00000568076 SCN9AQ15858 1988 aa22.95■■□□□ 1.26
CLN3-230ENST00000568076 GREB1LQ9C091 1923 aaPredicted RBP22.94■■□□□ 1.26
CLN3-230ENST00000568076 CCNT1O60563 726 aaKnown RBP22.94■■□□□ 1.26
CLN3-230ENST00000568076 CHRNA5P30532 468 aa22.94■■□□□ 1.26
CLN3-230ENST00000568076 KCNJ6P48051 423 aa22.94■■□□□ 1.26
CLN3-230ENST00000568076 ZNF543Q08ER8 600 aa22.94■■□□□ 1.26
CLN3-230ENST00000568076 STRIP1Q5VSL9 837 aa22.94■■□□□ 1.26
CLN3-230ENST00000568076 LRRC15Q8TF66 581 aa22.94■■□□□ 1.26
CLN3-230ENST00000568076 COA7Q96BR5 231 aa22.94■■□□□ 1.26
CLN3-230ENST00000568076 TMEM260Q9NX78 707 aa22.94■■□□□ 1.26
CLN3-230ENST00000568076 ZNF646O15015 1829 aaPredicted RBP22.94■■□□□ 1.26
CLN3-230ENST00000568076 ECE2O60344 883 aa22.94■■□□□ 1.26
CLN3-230ENST00000568076 PTPN14Q15678 1187 aa22.94■■□□□ 1.26
CLN3-230ENST00000568076 CDKAL1Q5VV42 579 aa22.94■■□□□ 1.26
CLN3-230ENST00000568076 JAKMIP3Q5VZ66 844 aa22.94■■□□□ 1.26
CLN3-230ENST00000568076 CEP135Q66GS9 1140 aa22.94■■□□□ 1.26
CLN3-230ENST00000568076 NEK8Q86SG6 692 aa22.94■■□□□ 1.26
CLN3-230ENST00000568076 TBCKQ8TEA7 893 aa22.94■■□□□ 1.26
CLN3-230ENST00000568076 CCSER1Q9C0I3 900 aa22.94■■□□□ 1.26
CLN3-230ENST00000568076 hCG_1984214I3L0E3 225 aa22.93■■□□□ 1.26
CLN3-230ENST00000568076 RPN1P04843 607 aaKnown RBP22.93■■□□□ 1.26
CLN3-230ENST00000568076 NR1I3Q14994 352 aa22.93■■□□□ 1.26
CLN3-230ENST00000568076 ZNF713Q8N859 430 aaPredicted RBP22.93■■□□□ 1.26
CLN3-230ENST00000568076 MRIQ9BWK5 157 aa22.93■■□□□ 1.26
CLN3-230ENST00000568076 EHD4Q9H223 541 aa22.93■■□□□ 1.26
CLN3-230ENST00000568076 A0A1B0GTH6 734 aa22.92■■□□□ 1.26
CLN3-230ENST00000568076 OR52Z1P0C646 297 aa22.92■■□□□ 1.26
CLN3-230ENST00000568076 FKBP1AP62942 108 aaKnown RBP22.92■■□□□ 1.26
CLN3-230ENST00000568076 RRAGBQ5VZM2 374 aa22.92■■□□□ 1.26
CLN3-230ENST00000568076 REXO1Q8N1G1 1221 aaKnown RBP22.92■■□□□ 1.26
CLN3-230ENST00000568076 CTNND2Q9UQB3 1225 aa22.92■■□□□ 1.26
CLN3-230ENST00000568076 SIPA1L1O43166 1804 aa22.92■■□□□ 1.26
CLN3-230ENST00000568076 MPHOSPH10O00566 681 aaKnown RBP22.92■■□□□ 1.26
CLN3-230ENST00000568076 COBLO75128 1261 aa22.92■■□□□ 1.26
CLN3-230ENST00000568076 RXRBP28702 533 aa22.92■■□□□ 1.26
CLN3-230ENST00000568076 UBA7P41226 1012 aa22.92■■□□□ 1.26
CLN3-230ENST00000568076 SPECC1LQ69YQ0 1117 aa22.92■■□□□ 1.26
CLN3-230ENST00000568076 TTBK2Q6IQ55 1244 aa22.92■■□□□ 1.26
CLN3-230ENST00000568076 PLIN2Q99541 437 aa22.92■■□□□ 1.26
CLN3-230ENST00000568076 JMJD4Q9H9V9 463 aa22.92■■□□□ 1.26
CLN3-230ENST00000568076 FAM198AQ9UFP1 575 aa22.92■■□□□ 1.26
CLN3-230ENST00000568076 PSDA5PKW4 1024 aaPredicted RBP22.91■■□□□ 1.26
CLN3-230ENST00000568076 DDTLA6NHG4 134 aaPredicted RBP22.91■■□□□ 1.26
CLN3-230ENST00000568076 PPP1R11O60927 126 aaPredicted RBP22.91■■□□□ 1.26
CLN3-230ENST00000568076 TCP10Q12799 353 aa22.91■■□□□ 1.26
CLN3-230ENST00000568076 SHROOM1Q2M3G4 852 aaPredicted RBP22.91■■□□□ 1.26
CLN3-230ENST00000568076 ZNF658Q5TYW1 1059 aaPredicted RBP22.91■■□□□ 1.26
CLN3-230ENST00000568076 TMEM139Q8IV31 216 aa22.91■■□□□ 1.26
CLN3-230ENST00000568076 ADGRF4Q8IZF3 695 aa22.91■■□□□ 1.26
CLN3-230ENST00000568076 C7orf43Q8WVR3 580 aa22.91■■□□□ 1.26
CLN3-230ENST00000568076 PPP1R13BQ96KQ4 1090 aa22.91■■□□□ 1.26
CLN3-230ENST00000568076 PAXBP1Q9Y5B6 917 aa22.91■■□□□ 1.26
CLN3-230ENST00000568076 FAM196BA6NMK8 535 aa22.9■■□□□ 1.26
CLN3-230ENST00000568076 SH3BP5LQ7L8J4 393 aa22.9■■□□□ 1.26
CLN3-230ENST00000568076 CCDC112Q8NEF3 446 aa22.9■■□□□ 1.26
CLN3-230ENST00000568076 TEX33O43247 280 aa22.9■■□□□ 1.26
CLN3-230ENST00000568076 NRDCO43847 1150 aa22.9■■□□□ 1.26
CLN3-230ENST00000568076 EDIL3O43854 480 aa22.9■■□□□ 1.26
CLN3-230ENST00000568076 ZNF592Q92610 1267 aa22.9■■□□□ 1.26
CLN3-230ENST00000568076 IDI2Q9BXS1 227 aa22.9■■□□□ 1.26
CLN3-230ENST00000568076 RMND1Q9NWS8 449 aa22.9■■□□□ 1.26
CLN3-230ENST00000568076 GDAQ9Y2T3 454 aa22.9■■□□□ 1.26
CLN3-230ENST00000568076 ADCY7P51828 1080 aa22.89■■□□□ 1.26
CLN3-230ENST00000568076 RBM5P52756 815 aaKnown RBP eCLIP22.89■■□□□ 1.26
CLN3-230ENST00000568076 HDLBPQ00341 1268 aaKnown RBP22.89■■□□□ 1.26
CLN3-230ENST00000568076 ATP2B2Q01814 1243 aa22.89■■□□□ 1.26
CLN3-230ENST00000568076 AOC3Q16853 763 aa22.89■■□□□ 1.26
CLN3-230ENST00000568076 RASSF8Q8NHQ8 419 aa22.89■■□□□ 1.26
CLN3-230ENST00000568076 KBTBD4Q9NVX7 518 aa22.89■■□□□ 1.26
CLN3-230ENST00000568076 PNMA6FA0A0J9YX94 578 aa22.89■■□□□ 1.25
CLN3-230ENST00000568076 SLC16A2P36021 539 aa22.89■■□□□ 1.25
CLN3-230ENST00000568076 CABP7Q86V35 215 aa22.89■■□□□ 1.25
CLN3-230ENST00000568076 POTEDQ86YR6 584 aa22.89■■□□□ 1.25
CLN3-230ENST00000568076 TC2NQ8N9U0 490 aa22.89■■□□□ 1.25
CLN3-230ENST00000568076 AK8Q96MA6 479 aa22.89■■□□□ 1.25
CLN3-230ENST00000568076 ADD3Q9UEY8 706 aaKnown RBP22.89■■□□□ 1.25
CLN3-230ENST00000568076 RWDD2AQ9UIY3 292 aa22.89■■□□□ 1.25
CLN3-230ENST00000568076 RGPD3A6NKT7 1758 aaPredicted RBP22.88■■□□□ 1.25
CLN3-230ENST00000568076 RGPD4Q7Z3J3 1758 aa22.88■■□□□ 1.25
CLN3-230ENST00000568076 CTIFO43310 598 aaKnown RBP22.88■■□□□ 1.25
CLN3-230ENST00000568076 KLRC4O43908 158 aa22.88■■□□□ 1.25
CLN3-230ENST00000568076 KCTD1Q719H9 257 aa22.88■■□□□ 1.25
CLN3-230ENST00000568076 CCDC17Q96LX7 622 aa22.88■■□□□ 1.25
CLN3-230ENST00000568076 DHX36Q9H2U1 1008 aaKnown RBP22.88■■□□□ 1.25
CLN3-230ENST00000568076 PLCG1P19174 1290 aa22.87■■□□□ 1.25
CLN3-230ENST00000568076 TECP42680 631 aa22.87■■□□□ 1.25
CLN3-230ENST00000568076 PRCPP42785 496 aa22.87■■□□□ 1.25
CLN3-230ENST00000568076 SLC15A2Q16348 729 aa22.87■■□□□ 1.25
CLN3-230ENST00000568076 ZNF710Q8N1W2 664 aa22.87■■□□□ 1.25
CLN3-230ENST00000568076 CNKSR1Q969H4 720 aa22.87■■□□□ 1.25
CLN3-230ENST00000568076 MYH4Q9Y623 1939 aa22.87■■□□□ 1.25
CLN3-230ENST00000568076 PBX1P40424 430 aa22.87■■□□□ 1.25
CLN3-230ENST00000568076 ADKP55263 362 aaKnown RBP22.87■■□□□ 1.25
CLN3-230ENST00000568076 PAK1Q13153 545 aa22.87■■□□□ 1.25
CLN3-230ENST00000568076 ORC2Q13416 577 aaPredicted RBP22.87■■□□□ 1.25
CLN3-230ENST00000568076 CCDC96Q2M329 555 aa22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms