RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 C11orf49Q9H6J7 331 aa5.67□□□□□ -1.5
CLK3-219ENST00000567805 SLC38A10Q9HBR0 1119 aa5.67□□□□□ -1.5
CLK3-219ENST00000567805 DDX20Q9UHI6 824 aaKnown RBP5.67□□□□□ -1.5
CLK3-219ENST00000567805 FEM1BQ9UK73 627 aa5.67□□□□□ -1.5
CLK3-219ENST00000567805 STX8Q9UNK0 236 aa5.67□□□□□ -1.5
CLK3-219ENST00000567805 DIS3Q9Y2L1 958 aaKnown RBP5.67□□□□□ -1.5
CLK3-219ENST00000567805 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.67□□□□□ -1.5
CLK3-219ENST00000567805 MYH6P13533 1939 aa5.67□□□□□ -1.5
CLK3-219ENST00000567805 SEPT4O43236 478 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 RANBP6O60518 1105 aaKnown RBP5.66□□□□□ -1.5
CLK3-219ENST00000567805 PLA2G6O60733 806 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 ZBED4O75132 1171 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 PCP11498 1178 aaKnown RBP5.66□□□□□ -1.5
CLK3-219ENST00000567805 COL6A1P12109 1028 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 SDSP20132 328 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 CNGA1P29973 690 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 CYP2C19P33261 490 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 SLC1A4P43007 532 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 NOVP48745 357 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 NT5C2P49902 561 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 STAT2P52630 851 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 KCTD2Q14681 263 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 SNRNP48Q6IEG0 339 aaKnown RBP5.66□□□□□ -1.5
CLK3-219ENST00000567805 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.66□□□□□ -1.5
CLK3-219ENST00000567805 FAM160B2Q86V87 743 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 TRPV1Q8NER1 839 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 CHURC1Q8WUH1 139 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 KIFC2Q96AC6 838 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 IL17RBQ9NRM6 502 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 NRBP1Q9UHY1 535 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 PCDHB8Q9UN66 801 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 CTDP1Q9Y5B0 961 aaPredicted RBP5.66□□□□□ -1.5
CLK3-219ENST00000567805 PFASO15067 1338 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 LCTP09848 1927 aa5.66□□□□□ -1.5
CLK3-219ENST00000567805 LRRC37A2A6NM11 1700 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 LTBP2Q14767 1821 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 CEP290O15078 2479 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 DNAJC25-GNG10A0A024R161 153 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 TMEM232C9JQI7 657 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 DNM1LO00429 736 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 NMT2O60551 498 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 PGK2P07205 417 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 MCCP23508 829 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 HAND2P61296 217 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 IKQ13123 557 aaPredicted RBP5.65□□□□□ -1.5
CLK3-219ENST00000567805 ZNF792Q3KQV3 632 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 RRP12Q5JTH9 1297 aaKnown RBP5.65□□□□□ -1.5
CLK3-219ENST00000567805 AKNAD1Q5T1N1 836 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 RCSD1Q6JBY9 416 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 CWC27Q6UX04 472 aaKnown RBP5.65□□□□□ -1.5
CLK3-219ENST00000567805 MFSD6Q6ZSS7 791 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 C7orf61Q8IZ16 206 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 CPXCR1Q8N123 301 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 MSL3Q8N5Y2 521 aaKnown RBP5.65□□□□□ -1.5
CLK3-219ENST00000567805 ARRDC4Q8NCT1 418 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 CHST13Q8NET6 341 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 DCAF4Q8WV16 495 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 STAG1Q8WVM7 1258 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 RNF25Q96BH1 459 aaPredicted RBP5.65□□□□□ -1.5
CLK3-219ENST00000567805 FAM212AQ96EL1 285 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 TINF2Q9BSI4 451 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 RNF41Q9H4P4 317 aaPredicted RBP5.65□□□□□ -1.5
CLK3-219ENST00000567805 INCENPQ9NQS7 918 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 TOMM22Q9NS69 142 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 DIAPH3Q9NSV4 1193 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 TCP11L1Q9NUJ3 509 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 FBXO40Q9UH90 709 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 ISY1Q9ULR0 285 aaKnown RBP5.65□□□□□ -1.5
CLK3-219ENST00000567805 RIPK3Q9Y572 518 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 TACC3Q9Y6A5 838 aa5.65□□□□□ -1.5
CLK3-219ENST00000567805 SYNGAP1Q96PV0 1343 aa5.65□□□□□ -1.51
CLK3-219ENST00000567805 A0A1W2PPC1 479 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 KBTBD13C9JR72 458 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 ZNF213O14771 459 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 PYGBP11216 843 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 TOP1P11387 765 aaKnown RBP5.64□□□□□ -1.51
CLK3-219ENST00000567805 PDE4AP27815 886 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 IRX6P78412 446 aaPredicted RBP5.64□□□□□ -1.51
CLK3-219ENST00000567805 IMMTQ16891 758 aaKnown RBP5.64□□□□□ -1.51
CLK3-219ENST00000567805 TKFCQ3LXA3 575 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 PRAMEF19Q5SWL8 479 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 TTC22Q5TAA0 569 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 MAMDC4Q6UXC1 1216 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 KCTD1Q719H9 257 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 ZNF467Q7Z7K2 595 aaPredicted RBP5.64□□□□□ -1.51
CLK3-219ENST00000567805 ANKRD35Q8N283 1001 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 ESR2Q92731 530 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 DDX11Q96FC9 970 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 TTC14Q96N46 770 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 TMEM47Q9BQJ4 181 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 DSCC1Q9BVC3 393 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 SENP6Q9GZR1 1112 aaPredicted RBP5.64□□□□□ -1.51
CLK3-219ENST00000567805 PRO3102Q9H379 93 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 ACAD9Q9H845 621 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 RAVER2Q9HCJ3 691 aaKnown RBP5.64□□□□□ -1.51
CLK3-219ENST00000567805 RBM27Q9P2N5 1060 aaKnown RBP5.64□□□□□ -1.51
CLK3-219ENST00000567805 PRR12Q9ULL5 1215 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 CNPY2Q9Y2B0 182 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 ZNF536O15090 1300 aa5.64□□□□□ -1.51
CLK3-219ENST00000567805 COL6A3P12111 3177 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms