RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ARHGEF6Q15052 776 aa22.8■■□□□ 1.24
CLN3-225ENST00000566824 FBXO46Q6PJ61 603 aaPredicted RBP22.8■■□□□ 1.24
CLN3-225ENST00000566824 CCAR1Q8IX12 1150 aaKnown RBP22.8■■□□□ 1.24
CLN3-225ENST00000566824 CMTR1Q8N1G2 835 aaKnown RBP22.8■■□□□ 1.24
CLN3-225ENST00000566824 AGXT2Q9BYV1 514 aa22.8■■□□□ 1.24
CLN3-225ENST00000566824 CTDP1Q9Y5B0 961 aaPredicted RBP22.8■■□□□ 1.24
CLN3-225ENST00000566824 SLC12A7Q9Y666 1083 aa22.8■■□□□ 1.24
CLN3-225ENST00000566824 CYP46A1Q9Y6A2 500 aa22.8■■□□□ 1.24
CLN3-225ENST00000566824 PLEKHA8P1O95397 391 aa22.79■■□□□ 1.24
CLN3-225ENST00000566824 MICU3Q86XE3 530 aa22.79■■□□□ 1.24
CLN3-225ENST00000566824 MROH8Q9H579 483 aa22.79■■□□□ 1.24
CLN3-225ENST00000566824 HOMER2Q9NSB8 354 aa22.79■■□□□ 1.24
CLN3-225ENST00000566824 ZNF236Q9UL36 1845 aa22.78■■□□□ 1.24
CLN3-225ENST00000566824 SLC25A27O95847 323 aa22.78■■□□□ 1.24
CLN3-225ENST00000566824 FDX1P10109 184 aa22.78■■□□□ 1.24
CLN3-225ENST00000566824 HOXD10P28358 340 aa22.78■■□□□ 1.24
CLN3-225ENST00000566824 OAZ1P54368 228 aa22.78■■□□□ 1.24
CLN3-225ENST00000566824 CDC37Q16543 378 aaPredicted RBP22.78■■□□□ 1.24
CLN3-225ENST00000566824 TNS4Q8IZW8 715 aa22.78■■□□□ 1.24
CLN3-225ENST00000566824 MAP3K14Q99558 947 aa22.78■■□□□ 1.24
CLN3-225ENST00000566824 KIF2CQ99661 725 aa22.78■■□□□ 1.24
CLN3-225ENST00000566824 CWC22Q9HCG8 908 aaKnown RBP22.78■■□□□ 1.24
CLN3-225ENST00000566824 HPS5Q9UPZ3 1129 aa22.78■■□□□ 1.24
CLN3-225ENST00000566824 PLXNA1Q9UIW2 1896 aa22.77■■□□□ 1.24
CLN3-225ENST00000566824 SLC15A5A6NIM6 579 aa22.77■■□□□ 1.24
CLN3-225ENST00000566824 EIF5BO60841 1220 aaKnown RBP22.77■■□□□ 1.24
CLN3-225ENST00000566824 ICAM1P05362 532 aa22.77■■□□□ 1.24
CLN3-225ENST00000566824 ALAS1P13196 640 aa22.77■■□□□ 1.24
CLN3-225ENST00000566824 ELNP15502 786 aa22.77■■□□□ 1.24
CLN3-225ENST00000566824 CYP2B6P20813 491 aa22.77■■□□□ 1.24
CLN3-225ENST00000566824 FGD1P98174 961 aa22.77■■□□□ 1.24
CLN3-225ENST00000566824 GRB14Q14449 540 aa22.77■■□□□ 1.24
CLN3-225ENST00000566824 PKN2Q16513 984 aaKnown RBP22.77■■□□□ 1.24
CLN3-225ENST00000566824 QRICH1Q2TAL8 776 aa22.77■■□□□ 1.24
CLN3-225ENST00000566824 MUM1L1Q5H9M0 696 aa22.77■■□□□ 1.24
CLN3-225ENST00000566824 FBXL16Q8N461 479 aa22.77■■□□□ 1.24
CLN3-225ENST00000566824 SRBD1Q8N5C6 995 aaKnown RBP22.77■■□□□ 1.24
CLN3-225ENST00000566824 FANCBQ8NB91 859 aa22.77■■□□□ 1.24
CLN3-225ENST00000566824 FAM217BQ9NTX9 383 aaPredicted RBP22.77■■□□□ 1.24
CLN3-225ENST00000566824 PDRG1Q9NUG6 133 aa22.77■■□□□ 1.24
CLN3-225ENST00000566824 CCPG1Q9ULG6 757 aa22.77■■□□□ 1.24
CLN3-225ENST00000566824 LCTP09848 1927 aa22.76■■□□□ 1.23
CLN3-225ENST00000566824 DHX16O60231 1041 aaKnown RBP22.76■■□□□ 1.23
CLN3-225ENST00000566824 PPP1R11O60927 126 aaPredicted RBP22.76■■□□□ 1.23
CLN3-225ENST00000566824 COBLO75128 1261 aa22.76■■□□□ 1.23
CLN3-225ENST00000566824 ADORA2AP29274 412 aa22.76■■□□□ 1.23
CLN3-225ENST00000566824 CCL14Q16627 93 aa22.76■■□□□ 1.23
CLN3-225ENST00000566824 CTCFLQ8NI51 663 aaPredicted RBP22.76■■□□□ 1.23
CLN3-225ENST00000566824 RAET1EQ8TD07 263 aa22.76■■□□□ 1.23
CLN3-225ENST00000566824 SH3TC2Q8TF17 1288 aa22.76■■□□□ 1.23
CLN3-225ENST00000566824 PIBF1Q8WXW3 757 aa22.76■■□□□ 1.23
CLN3-225ENST00000566824 MTMR8Q96EF0 704 aa22.76■■□□□ 1.23
CLN3-225ENST00000566824 C22orf23Q9BZE7 217 aa22.76■■□□□ 1.23
CLN3-225ENST00000566824 RIOX1Q9H6W3 641 aa22.76■■□□□ 1.23
CLN3-225ENST00000566824 RNF146Q9NTX7 359 aa22.76■■□□□ 1.23
CLN3-225ENST00000566824 NAP1L2Q9ULW6 460 aaPredicted RBP22.76■■□□□ 1.23
CLN3-225ENST00000566824 ZBTB43O43298 467 aa22.75■■□□□ 1.23
CLN3-225ENST00000566824 PGK2P07205 417 aa22.75■■□□□ 1.23
CLN3-225ENST00000566824 CDC27P30260 824 aa22.75■■□□□ 1.23
CLN3-225ENST00000566824 PRMT2P55345 433 aa22.75■■□□□ 1.23
CLN3-225ENST00000566824 MAP2K5Q13163 448 aa22.75■■□□□ 1.23
CLN3-225ENST00000566824 NPLOC4Q8TAT6 608 aa22.75■■□□□ 1.23
CLN3-225ENST00000566824 TRERF1Q96PN7 1200 aa22.75■■□□□ 1.23
CLN3-225ENST00000566824 PIGSQ96S52 555 aa22.75■■□□□ 1.23
CLN3-225ENST00000566824 MMP19Q99542 508 aa22.75■■□□□ 1.23
CLN3-225ENST00000566824 NUDT12Q9BQG2 462 aa22.75■■□□□ 1.23
CLN3-225ENST00000566824 BACH2Q9BYV9 841 aa22.75■■□□□ 1.23
CLN3-225ENST00000566824 ADCY3O60266 1144 aa22.74■■□□□ 1.23
CLN3-225ENST00000566824 CALM1P0DP23 149 aa22.74■■□□□ 1.23
CLN3-225ENST00000566824 CALM2P0DP24 149 aa22.74■■□□□ 1.23
CLN3-225ENST00000566824 CALM3P0DP25 149 aa22.74■■□□□ 1.23
CLN3-225ENST00000566824 IRF5Q13568 498 aa22.74■■□□□ 1.23
CLN3-225ENST00000566824 USH1GQ495M9 461 aa22.74■■□□□ 1.23
CLN3-225ENST00000566824 FLRT1Q9NZU1 646 aa22.74■■□□□ 1.23
CLN3-225ENST00000566824 IVNS1ABPQ9Y6Y0 642 aa22.74■■□□□ 1.23
CLN3-225ENST00000566824 hCG_1642624A0A1W2PR95 340 aa22.73■■□□□ 1.23
CLN3-225ENST00000566824 GOLGA8AA7E2F4 631 aa22.73■■□□□ 1.23
CLN3-225ENST00000566824 GOLGA8BA8MQT2 603 aa22.73■■□□□ 1.23
CLN3-225ENST00000566824 FCER1AP12319 257 aa22.73■■□□□ 1.23
CLN3-225ENST00000566824 KIF5BP33176 963 aa22.73■■□□□ 1.23
CLN3-225ENST00000566824 EVCP57679 992 aa22.73■■□□□ 1.23
CLN3-225ENST00000566824 TRIM32Q13049 653 aa22.73■■□□□ 1.23
CLN3-225ENST00000566824 SYNE3Q6ZMZ3 975 aa22.73■■□□□ 1.23
CLN3-225ENST00000566824 TMTC3Q6ZXV5 915 aa22.73■■□□□ 1.23
CLN3-225ENST00000566824 HOMER1Q86YM7 354 aa22.73■■□□□ 1.23
CLN3-225ENST00000566824 CCDC82Q8N4S0 544 aa22.73■■□□□ 1.23
CLN3-225ENST00000566824 SOCS4Q8WXH5 440 aa22.73■■□□□ 1.23
CLN3-225ENST00000566824 CLEC4DQ8WXI8 215 aa22.73■■□□□ 1.23
CLN3-225ENST00000566824 ABHD8Q96I13 439 aa22.73■■□□□ 1.23
CLN3-225ENST00000566824 CENPFP49454 3210 aa22.72■■□□□ 1.23
CLN3-225ENST00000566824 NFIBO00712 420 aa22.72■■□□□ 1.23
CLN3-225ENST00000566824 STRNO43815 780 aa22.72■■□□□ 1.23
CLN3-225ENST00000566824 PDIA3P30101 505 aaKnown RBP22.72■■□□□ 1.23
CLN3-225ENST00000566824 COPB2P35606 906 aa22.72■■□□□ 1.23
CLN3-225ENST00000566824 ADD1P35611 737 aaKnown RBP22.72■■□□□ 1.23
CLN3-225ENST00000566824 RBM25P49756 843 aaKnown RBP22.72■■□□□ 1.23
CLN3-225ENST00000566824 FUT2Q10981 343 aa22.72■■□□□ 1.23
CLN3-225ENST00000566824 RTN1Q16799 776 aa22.72■■□□□ 1.23
CLN3-225ENST00000566824 ABRAQ8N0Z2 381 aa22.72■■□□□ 1.23
CLN3-225ENST00000566824 CHST13Q8NET6 341 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms