RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 ZBBXA8MT70 800 aa20.27■□□□□ 0.84
CDH3-205ENST00000566808 TLL1O43897 1013 aa20.27■□□□□ 0.84
CDH3-205ENST00000566808 CCL23P55773 120 aa20.27■□□□□ 0.84
CDH3-205ENST00000566808 ATP8B2P98198 1209 aa20.27■□□□□ 0.84
CDH3-205ENST00000566808 ARMCX2Q7L311 632 aa20.27■□□□□ 0.84
CDH3-205ENST00000566808 MYH7P12883 1935 aa20.27■□□□□ 0.84
CDH3-205ENST00000566808 MYH4Q9Y623 1939 aa20.27■□□□□ 0.84
CDH3-205ENST00000566808 ZNF532Q9HCE3 1301 aa20.27■□□□□ 0.83
CDH3-205ENST00000566808 SCN5AQ14524 2016 aa20.26■□□□□ 0.83
CDH3-205ENST00000566808 ATP2A1O14983 1001 aa20.26■□□□□ 0.83
CDH3-205ENST00000566808 PFKMP08237 780 aa20.26■□□□□ 0.83
CDH3-205ENST00000566808 TMEM67Q5HYA8 995 aa20.26■□□□□ 0.83
CDH3-205ENST00000566808 CXCL17Q6UXB2 119 aa20.26■□□□□ 0.83
CDH3-205ENST00000566808 AMOTL1Q8IY63 956 aa20.26■□□□□ 0.83
CDH3-205ENST00000566808 FGD4Q96M96 766 aa20.26■□□□□ 0.83
CDH3-205ENST00000566808 RIPK3Q9Y572 518 aa20.26■□□□□ 0.83
CDH3-205ENST00000566808 FAM86C2PA6NEL3 165 aa20.25■□□□□ 0.83
CDH3-205ENST00000566808 RAD21O60216 631 aa20.25■□□□□ 0.83
CDH3-205ENST00000566808 BCAR3O75815 825 aa20.25■□□□□ 0.83
CDH3-205ENST00000566808 CA3P07451 260 aa20.25■□□□□ 0.83
CDH3-205ENST00000566808 CDK8P49336 464 aa20.25■□□□□ 0.83
CDH3-205ENST00000566808 BEX3Q00994 111 aa20.25■□□□□ 0.83
CDH3-205ENST00000566808 ITGA7Q13683 1181 aa20.25■□□□□ 0.83
CDH3-205ENST00000566808 C16orf86Q6ZW13 317 aa20.25■□□□□ 0.83
CDH3-205ENST00000566808 HLA-CQ95604 372 aa20.25■□□□□ 0.83
CDH3-205ENST00000566808 KATNBL1Q9H079 304 aa20.25■□□□□ 0.83
CDH3-205ENST00000566808 ATP8A2Q9NTI2 1148 aa20.25■□□□□ 0.83
CDH3-205ENST00000566808 TNNQ9UQP3 1299 aa20.25■□□□□ 0.83
CDH3-205ENST00000566808 TCRBV5S4A2TA0A5A2 114 aa20.24■□□□□ 0.83
CDH3-205ENST00000566808 KHSRPQ92945 711 aaKnown RBP eCLIP20.24■□□□□ 0.83
CDH3-205ENST00000566808 CLUAP1Q96AJ1 413 aa20.24■□□□□ 0.83
CDH3-205ENST00000566808 FBXO40Q9UH90 709 aa20.24■□□□□ 0.83
CDH3-205ENST00000566808 RFXAPO00287 272 aa20.23■□□□□ 0.83
CDH3-205ENST00000566808 B4GALT4O60513 344 aa20.23■□□□□ 0.83
CDH3-205ENST00000566808 TNFAIP2Q03169 654 aa20.23■□□□□ 0.83
CDH3-205ENST00000566808 FSCN1Q16658 493 aaKnown RBP20.23■□□□□ 0.83
CDH3-205ENST00000566808 C12orf60Q5U649 245 aa20.23■□□□□ 0.83
CDH3-205ENST00000566808 TLK2Q86UE8 772 aa20.23■□□□□ 0.83
CDH3-205ENST00000566808 AACSQ86V21 672 aa20.23■□□□□ 0.83
CDH3-205ENST00000566808 ALYREFQ86V81 257 aaKnown RBP20.23■□□□□ 0.83
CDH3-205ENST00000566808 CCDC144CPQ8IYA2 1237 aa20.23■□□□□ 0.83
CDH3-205ENST00000566808 ANKRD35Q8N283 1001 aa20.23■□□□□ 0.83
CDH3-205ENST00000566808 PRPF38AQ8NAV1 312 aaKnown RBP20.23■□□□□ 0.83
CDH3-205ENST00000566808 VWCEQ96DN2 955 aa20.23■□□□□ 0.83
CDH3-205ENST00000566808 TRPV6Q9H1D0 765 aa20.23■□□□□ 0.83
CDH3-205ENST00000566808 ASTN1O14525 1302 aa20.23■□□□□ 0.83
CDH3-205ENST00000566808 EPOPA6NHQ4 379 aa20.22■□□□□ 0.83
CDH3-205ENST00000566808 FRAT1Q92837 279 aaPredicted RBP20.22■□□□□ 0.83
CDH3-205ENST00000566808 SLC9A7Q96T83 725 aa20.22■□□□□ 0.83
CDH3-205ENST00000566808 NUP88Q99567 741 aaPredicted RBP20.22■□□□□ 0.83
CDH3-205ENST00000566808 ARMT1Q9H993 441 aa20.22■□□□□ 0.83
CDH3-205ENST00000566808 GRIN2DO15399 1336 aa20.22■□□□□ 0.83
CDH3-205ENST00000566808 WDFY4Q6ZS81 3184 aa20.21■□□□□ 0.83
CDH3-205ENST00000566808 CYP2D7A0A087X1C5 515 aa20.21■□□□□ 0.83
CDH3-205ENST00000566808 PI4K2BG5E9Z4 385 aa20.21■□□□□ 0.83
CDH3-205ENST00000566808 ZEB2O60315 1214 aa20.21■□□□□ 0.83
CDH3-205ENST00000566808 TTLL4Q14679 1199 aa20.21■□□□□ 0.83
CDH3-205ENST00000566808 NOL8Q76FK4 1167 aaKnown RBP20.21■□□□□ 0.83
CDH3-205ENST00000566808 ERC1Q8IUD2 1116 aa20.21■□□□□ 0.83
CDH3-205ENST00000566808 CPXCR1Q8N123 301 aa20.21■□□□□ 0.83
CDH3-205ENST00000566808 TMEM57Q8N5G2 664 aa20.21■□□□□ 0.83
CDH3-205ENST00000566808 CHST13Q8NET6 341 aa20.21■□□□□ 0.83
CDH3-205ENST00000566808 SCLYQ96I15 445 aa20.21■□□□□ 0.83
CDH3-205ENST00000566808 AGBL1Q96MI9 1066 aa20.21■□□□□ 0.83
CDH3-205ENST00000566808 C1orf115Q9H7X2 142 aa20.21■□□□□ 0.83
CDH3-205ENST00000566808 CERS4Q9HA82 394 aa20.21■□□□□ 0.83
CDH3-205ENST00000566808 GNEQ9Y223 722 aaKnown RBP20.21■□□□□ 0.83
CDH3-205ENST00000566808 CTDP1Q9Y5B0 961 aaPredicted RBP20.21■□□□□ 0.83
CDH3-205ENST00000566808 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.2■□□□□ 0.82
CDH3-205ENST00000566808 SMIM22K7EJ46 135 aa20.2■□□□□ 0.82
CDH3-205ENST00000566808 ZBED4O75132 1171 aa20.2■□□□□ 0.82
CDH3-205ENST00000566808 MBD4O95243 580 aa20.2■□□□□ 0.82
CDH3-205ENST00000566808 SLC4A3P48751 1232 aa20.2■□□□□ 0.82
CDH3-205ENST00000566808 OAZ1P54368 228 aa20.2■□□□□ 0.82
CDH3-205ENST00000566808 KRT40Q6A162 431 aa20.2■□□□□ 0.82
CDH3-205ENST00000566808 DDRGK1Q96HY6 314 aa20.2■□□□□ 0.82
CDH3-205ENST00000566808 AP5M1Q9H0R1 490 aa20.2■□□□□ 0.82
CDH3-205ENST00000566808 SLC38A10Q9HBR0 1119 aa20.2■□□□□ 0.82
CDH3-205ENST00000566808 PTPRSQ13332 1948 aa20.19■□□□□ 0.82
CDH3-205ENST00000566808 PRR33A8MZF0 331 aa20.19■□□□□ 0.82
CDH3-205ENST00000566808 PRKAB2O43741 272 aa20.19■□□□□ 0.82
CDH3-205ENST00000566808 NDUFB10O96000 172 aa20.19■□□□□ 0.82
CDH3-205ENST00000566808 ACTN1P12814 892 aa20.19■□□□□ 0.82
CDH3-205ENST00000566808 ARNTL2Q8WYA1 636 aa20.19■□□□□ 0.82
CDH3-205ENST00000566808 ALDH8A1Q9H2A2 487 aaPredicted RBP20.19■□□□□ 0.82
CDH3-205ENST00000566808 USP17L12C9JPN9 530 aa20.18■□□□□ 0.82
CDH3-205ENST00000566808 USP17L21D6R901 530 aa20.18■□□□□ 0.82
CDH3-205ENST00000566808 GOLIM4O00461 696 aa20.18■□□□□ 0.82
CDH3-205ENST00000566808 TAP1Q03518 808 aa20.18■□□□□ 0.82
CDH3-205ENST00000566808 PHOSPHO2Q8TCD6 241 aa20.18■□□□□ 0.82
CDH3-205ENST00000566808 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.18■□□□□ 0.82
CDH3-205ENST00000566808 DNAJC2Q99543 621 aaKnown RBP20.18■□□□□ 0.82
CDH3-205ENST00000566808 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.18■□□□□ 0.82
CDH3-205ENST00000566808 RAVER2Q9HCJ3 691 aaKnown RBP20.18■□□□□ 0.82
CDH3-205ENST00000566808 ZBED9Q6R2W3 1325 aa20.18■□□□□ 0.82
CDH3-205ENST00000566808 F5H6K3 240 aa20.17■□□□□ 0.82
CDH3-205ENST00000566808 SUPT20HL2P0C7V6 817 aa20.17■□□□□ 0.82
CDH3-205ENST00000566808 PSMC6P62333 389 aa20.17■□□□□ 0.82
CDH3-205ENST00000566808 KLRC3Q07444 240 aa20.17■□□□□ 0.82
CDH3-205ENST00000566808 FAM133AQ8N9E0 248 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms