RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 NLGN1Q8N2Q7 840 aa7.05□□□□□ -1.28
CLN3-223ENST00000566472 IGSF22Q8N9C0 903 aa7.05□□□□□ -1.28
CLN3-223ENST00000566472 FLAD1Q8NFF5 587 aa7.05□□□□□ -1.28
CLN3-223ENST00000566472 NELFBQ8WX92 580 aa7.05□□□□□ -1.28
CLN3-223ENST00000566472 TSC1Q92574 1164 aa7.05□□□□□ -1.28
CLN3-223ENST00000566472 IQCDQ96DY2 449 aa7.05□□□□□ -1.28
CLN3-223ENST00000566472 CEP95Q96GE4 821 aa7.05□□□□□ -1.28
CLN3-223ENST00000566472 DHTKD1Q96HY7 919 aaPredicted RBP7.05□□□□□ -1.28
CLN3-223ENST00000566472 MTRQ99707 1265 aa7.05□□□□□ -1.28
CLN3-223ENST00000566472 NAP1L4Q99733 375 aaKnown RBP7.05□□□□□ -1.28
CLN3-223ENST00000566472 TUBB2BQ9BVA1 445 aa7.05□□□□□ -1.28
CLN3-223ENST00000566472 MRIQ9BWK5 157 aa7.05□□□□□ -1.28
CLN3-223ENST00000566472 GLT8D2Q9H1C3 349 aa7.05□□□□□ -1.28
CLN3-223ENST00000566472 EHD4Q9H223 541 aa7.05□□□□□ -1.28
CLN3-223ENST00000566472 THAP9Q9H5L6 903 aa7.05□□□□□ -1.28
CLN3-223ENST00000566472 KBTBD4Q9NVX7 518 aa7.05□□□□□ -1.28
CLN3-223ENST00000566472 STK17AQ9UEE5 414 aa7.05□□□□□ -1.28
CLN3-223ENST00000566472 POLLQ9UGP5 575 aa7.05□□□□□ -1.28
CLN3-223ENST00000566472 ZNF215Q9UL58 517 aaPredicted RBP7.05□□□□□ -1.28
CLN3-223ENST00000566472 BICDL2A1A5D9 508 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 SMCO2A6NFE2 343 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 C6orf229H3BNL8 230 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 KLRC4O43908 158 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 NPM3O75607 178 aaKnown RBP7.04□□□□□ -1.28
CLN3-223ENST00000566472 HLA-DOAP06340 250 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 PDHBP11177 359 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 VEGFAP15692 232 aaPredicted RBP7.04□□□□□ -1.28
CLN3-223ENST00000566472 ALDH1B1P30837 517 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 CASQ1P31415 396 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 FXR2P51116 673 aaKnown RBP eCLIP7.04□□□□□ -1.28
CLN3-223ENST00000566472 ADCY7P51828 1080 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 STX17P56962 302 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 KARSQ15046 597 aaKnown RBP7.04□□□□□ -1.28
CLN3-223ENST00000566472 KRT31Q15323 416 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 NAALADL2Q58DX5 795 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 TCP11X2Q5H9J9 407 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 FAM182BQ5T319 152 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 GPATCH4Q5T3I0 446 aaKnown RBP7.04□□□□□ -1.28
CLN3-223ENST00000566472 HHIPL2Q6UWX4 724 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 CABP7Q86V35 215 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 TMTC1Q8IUR5 882 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 FAM114A1Q8IWE2 563 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 SMAP1Q8IYB5 467 aaPredicted RBP7.04□□□□□ -1.28
CLN3-223ENST00000566472 REXO1Q8N1G1 1221 aaKnown RBP7.04□□□□□ -1.28
CLN3-223ENST00000566472 GIMAP8Q8ND71 665 aaPredicted RBP7.04□□□□□ -1.28
CLN3-223ENST00000566472 RASSF8Q8NHQ8 419 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 RASGRP4Q8TDF6 673 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 CCDC17Q96LX7 622 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 GPR101Q96P66 508 aaPredicted RBP7.04□□□□□ -1.28
CLN3-223ENST00000566472 C7orf25Q9BPX7 421 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 RAB34Q9BZG1 259 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 LRRC27Q9C0I9 530 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 BLZF1Q9H2G9 400 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 TMEM60Q9H2L4 133 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 MTMR4Q9NYA4 1195 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 TTF2Q9UNY4 1162 aaKnown RBP7.04□□□□□ -1.28
CLN3-223ENST00000566472 FOCADQ5VW36 1801 aa7.04□□□□□ -1.28
CLN3-223ENST00000566472 ABCB11O95342 1321 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 LGALS16A8MUM7 142 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 EFCAB8A8MWE9 144 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 KCNJ18B7U540 433 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 N4BP3O15049 544 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 ADAMTS3O15072 1205 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 TEX33O43247 280 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 TTLL1O95922 423 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 SRGNP10124 158 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 GCFC2P16383 781 aaKnown RBP7.03□□□□□ -1.28
CLN3-223ENST00000566472 CCNE1P24864 410 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 CASP1P29466 404 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 PDE6BP35913 854 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 ADKP55263 362 aaKnown RBP7.03□□□□□ -1.28
CLN3-223ENST00000566472 TUBB4BP68371 445 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 GTF2IP78347 998 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 HDLBPQ00341 1268 aaKnown RBP7.03□□□□□ -1.28
CLN3-223ENST00000566472 RBL2Q08999 1139 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 KCNJ12Q14500 433 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 TMEM266Q2M3C6 531 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 SLC4A8Q2Y0W8 1093 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 KMT5BQ4FZB7 885 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 MCTP2Q6DN12 878 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 CNNM4Q6P4Q7 775 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 USP17L2Q6R6M4 530 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 RASGRP2Q7LDG7 609 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 KRT27Q7Z3Y8 459 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 TEX2Q8IWB9 1127 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 SMYD4Q8IYR2 804 aaPredicted RBP7.03□□□□□ -1.28
CLN3-223ENST00000566472 RETREG2Q8NC44 543 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 MNS1Q8NEH6 495 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 CALML4Q96GE6 196 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 PIGSQ96S52 555 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 NUP58Q9BVL2 599 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 ZC3H12CQ9C0D7 883 aaKnown RBP7.03□□□□□ -1.28
CLN3-223ENST00000566472 TMX4Q9H1E5 349 aaPredicted RBP7.03□□□□□ -1.28
CLN3-223ENST00000566472 EXOC1Q9NV70 894 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 ARGLU1Q9NWB6 273 aaPredicted RBP7.03□□□□□ -1.28
CLN3-223ENST00000566472 OGFRQ9NZT2 677 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 MYO1AQ9UBC5 1043 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 MAGEC2Q9UBF1 373 aaPredicted RBP7.03□□□□□ -1.28
CLN3-223ENST00000566472 SERPINB13Q9UIV8 391 aa7.03□□□□□ -1.28
CLN3-223ENST00000566472 ADGRG1Q9Y653 693 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms