RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 MCM5P33992 734 aa20.19■□□□□ 0.82
CLN3-217ENST00000565354 NOVP48745 357 aa20.19■□□□□ 0.82
CLN3-217ENST00000565354 ATN1P54259 1190 aaPredicted RBP20.19■□□□□ 0.82
CLN3-217ENST00000565354 CHST3Q7LGC8 479 aa20.19■□□□□ 0.82
CLN3-217ENST00000565354 MB21D2Q8IYB1 491 aaPredicted RBP20.19■□□□□ 0.82
CLN3-217ENST00000565354 PRKAG2Q9UGJ0 569 aa20.19■□□□□ 0.82
CLN3-217ENST00000565354 CTDP1Q9Y5B0 961 aaPredicted RBP20.19■□□□□ 0.82
CLN3-217ENST00000565354 CDH23Q9H251 3354 aa20.18■□□□□ 0.82
CLN3-217ENST00000565354 SPDYE16A6NNV3 312 aaPredicted RBP20.18■□□□□ 0.82
CLN3-217ENST00000565354 HSPA4P34932 840 aa20.18■□□□□ 0.82
CLN3-217ENST00000565354 WTAPQ15007 396 aa20.18■□□□□ 0.82
CLN3-217ENST00000565354 RCSD1Q6JBY9 416 aa20.18■□□□□ 0.82
CLN3-217ENST00000565354 ENAHQ8N8S7 591 aaPredicted RBP20.18■□□□□ 0.82
CLN3-217ENST00000565354 DCAF4Q8WV16 495 aa20.18■□□□□ 0.82
CLN3-217ENST00000565354 GMCL1Q96IK5 515 aa20.18■□□□□ 0.82
CLN3-217ENST00000565354 NEK1Q96PY6 1258 aa20.18■□□□□ 0.82
CLN3-217ENST00000565354 FEM1BQ9UK73 627 aa20.18■□□□□ 0.82
CLN3-217ENST00000565354 DNM1LO00429 736 aa20.17■□□□□ 0.82
CLN3-217ENST00000565354 PRC1O43663 620 aa20.17■□□□□ 0.82
CLN3-217ENST00000565354 HOXC6P09630 235 aa20.17■□□□□ 0.82
CLN3-217ENST00000565354 PTPREP23469 700 aa20.17■□□□□ 0.82
CLN3-217ENST00000565354 CNGA1P29973 690 aa20.17■□□□□ 0.82
CLN3-217ENST00000565354 DSG3P32926 999 aa20.17■□□□□ 0.82
CLN3-217ENST00000565354 RTP1P59025 263 aa20.17■□□□□ 0.82
CLN3-217ENST00000565354 TMEM67Q5HYA8 995 aa20.17■□□□□ 0.82
CLN3-217ENST00000565354 WDR78Q5VTH9 848 aa20.17■□□□□ 0.82
CLN3-217ENST00000565354 RASEFQ8IZ41 740 aa20.17■□□□□ 0.82
CLN3-217ENST00000565354 PNMA1Q8ND90 353 aa20.17■□□□□ 0.82
CLN3-217ENST00000565354 SLF1Q9BQI6 1058 aa20.17■□□□□ 0.82
CLN3-217ENST00000565354 USP26Q9BXU7 913 aa20.17■□□□□ 0.82
CLN3-217ENST00000565354 FBXO28Q9NVF7 368 aa20.17■□□□□ 0.82
CLN3-217ENST00000565354 TMEM232C9JQI7 657 aa20.16■□□□□ 0.82
CLN3-217ENST00000565354 STAT2P52630 851 aa20.16■□□□□ 0.82
CLN3-217ENST00000565354 TSGA10IPQ3SY00 556 aa20.16■□□□□ 0.82
CLN3-217ENST00000565354 KCTD1Q719H9 257 aa20.16■□□□□ 0.82
CLN3-217ENST00000565354 FAM160B2Q86V87 743 aa20.16■□□□□ 0.82
CLN3-217ENST00000565354 CHURC1Q8WUH1 139 aa20.16■□□□□ 0.82
CLN3-217ENST00000565354 ANKS1AQ92625 1134 aa20.16■□□□□ 0.82
CLN3-217ENST00000565354 KIFC2Q96AC6 838 aa20.16■□□□□ 0.82
CLN3-217ENST00000565354 ATG4CQ96DT6 458 aa20.16■□□□□ 0.82
CLN3-217ENST00000565354 CDX2Q99626 313 aaPredicted RBP20.16■□□□□ 0.82
CLN3-217ENST00000565354 PPP1R9AQ9ULJ8 1098 aa20.16■□□□□ 0.82
CLN3-217ENST00000565354 IVNS1ABPQ9Y6Y0 642 aa20.16■□□□□ 0.82
CLN3-217ENST00000565354 GRB14Q14449 540 aa20.15■□□□□ 0.82
CLN3-217ENST00000565354 PLS1Q14651 629 aa20.15■□□□□ 0.82
CLN3-217ENST00000565354 LBX2Q6XYB7 198 aa20.15■□□□□ 0.82
CLN3-217ENST00000565354 NFXL1Q6ZNB6 911 aa20.15■□□□□ 0.82
CLN3-217ENST00000565354 MB21D1Q8N884 522 aa20.15■□□□□ 0.82
CLN3-217ENST00000565354 PRPF38AQ8NAV1 312 aaKnown RBP20.15■□□□□ 0.82
CLN3-217ENST00000565354 TMEM87BQ96K49 555 aa20.15■□□□□ 0.82
CLN3-217ENST00000565354 JAKMIP1Q96N16 626 aaKnown RBP20.15■□□□□ 0.82
CLN3-217ENST00000565354 SNX14Q9Y5W7 946 aa20.15■□□□□ 0.82
CLN3-217ENST00000565354 FRMPD2Q68DX3 1309 aaPredicted RBP20.15■□□□□ 0.82
CLN3-217ENST00000565354 HMGB1P09429 215 aaKnown RBP20.14■□□□□ 0.81
CLN3-217ENST00000565354 PSMA5P28066 241 aa20.14■□□□□ 0.81
CLN3-217ENST00000565354 CYP2C19P33261 490 aa20.14■□□□□ 0.81
CLN3-217ENST00000565354 ANTXR2P58335 489 aa20.14■□□□□ 0.81
CLN3-217ENST00000565354 FGD1P98174 961 aa20.14■□□□□ 0.81
CLN3-217ENST00000565354 SEC23AQ15436 765 aa20.14■□□□□ 0.81
CLN3-217ENST00000565354 ADCK5Q3MIX3 580 aa20.14■□□□□ 0.81
CLN3-217ENST00000565354 TRPV1Q8NER1 839 aa20.14■□□□□ 0.81
CLN3-217ENST00000565354 NPLOC4Q8TAT6 608 aa20.14■□□□□ 0.81
CLN3-217ENST00000565354 MTA3Q9BTC8 594 aa20.14■□□□□ 0.81
CLN3-217ENST00000565354 SEMA6BQ9H3T3 888 aa20.14■□□□□ 0.81
CLN3-217ENST00000565354 GPCPD1Q9NPB8 672 aa20.14■□□□□ 0.81
CLN3-217ENST00000565354 BTBD7Q9P203 1132 aa20.14■□□□□ 0.81
CLN3-217ENST00000565354 ATP11BQ9Y2G3 1177 aa20.14■□□□□ 0.81
CLN3-217ENST00000565354 CCDC69A6NI79 296 aa20.13■□□□□ 0.81
CLN3-217ENST00000565354 ZBED4O75132 1171 aa20.13■□□□□ 0.81
CLN3-217ENST00000565354 IGHA2P01877 340 aa20.13■□□□□ 0.81
CLN3-217ENST00000565354 PDHBP11177 359 aa20.13■□□□□ 0.81
CLN3-217ENST00000565354 CYBAP13498 195 aa20.13■□□□□ 0.81
CLN3-217ENST00000565354 SHHQ15465 462 aa20.13■□□□□ 0.81
CLN3-217ENST00000565354 BLOC1S2Q6QNY1 142 aa20.13■□□□□ 0.81
CLN3-217ENST00000565354 RASGRP2Q7LDG7 609 aa20.13■□□□□ 0.81
CLN3-217ENST00000565354 CATIPQ7Z7H3 387 aa20.13■□□□□ 0.81
CLN3-217ENST00000565354 ARRDC4Q8NCT1 418 aa20.13■□□□□ 0.81
CLN3-217ENST00000565354 MAFAQ8NHW3 353 aaPredicted RBP20.13■□□□□ 0.81
CLN3-217ENST00000565354 KCNB2Q92953 911 aa20.13■□□□□ 0.81
CLN3-217ENST00000565354 ZNF236Q9UL36 1845 aa20.13■□□□□ 0.81
CLN3-217ENST00000565354 GPATCH4Q5T3I0 446 aaKnown RBP20.12■□□□□ 0.81
CLN3-217ENST00000565354 GJC2Q5T442 439 aaPredicted RBP20.12■□□□□ 0.81
CLN3-217ENST00000565354 DHX32Q7L7V1 743 aaKnown RBP20.12■□□□□ 0.81
CLN3-217ENST00000565354 TMTC2Q8N394 836 aa20.12■□□□□ 0.81
CLN3-217ENST00000565354 LRRC2Q9BYS8 371 aa20.12■□□□□ 0.81
CLN3-217ENST00000565354 PARP14Q460N5 1801 aa20.11■□□□□ 0.81
CLN3-217ENST00000565354 KBTBD13C9JR72 458 aa20.11■□□□□ 0.81
CLN3-217ENST00000565354 VWA5AO00534 786 aa20.11■□□□□ 0.81
CLN3-217ENST00000565354 SH2B2O14492 632 aaPredicted RBP20.11■□□□□ 0.81
CLN3-217ENST00000565354 PARP1P09874 1014 aaKnown RBP20.11■□□□□ 0.81
CLN3-217ENST00000565354 FDX1P10109 184 aa20.11■□□□□ 0.81
CLN3-217ENST00000565354 ZNF543Q08ER8 600 aa20.11■□□□□ 0.81
CLN3-217ENST00000565354 C9orf50Q5SZB4 431 aa20.11■□□□□ 0.81
CLN3-217ENST00000565354 SLC39A5Q6ZMH5 540 aa20.11■□□□□ 0.81
CLN3-217ENST00000565354 IGDCC4Q8TDY8 1250 aa20.11■□□□□ 0.81
CLN3-217ENST00000565354 SPATC1LQ9H0A9 340 aa20.11■□□□□ 0.81
CLN3-217ENST00000565354 WDR19Q8NEZ3 1342 aa20.1■□□□□ 0.81
CLN3-217ENST00000565354 PLA2G6O60733 806 aa20.1■□□□□ 0.81
CLN3-217ENST00000565354 GOLGA8HP0CJ92 632 aa20.1■□□□□ 0.81
CLN3-217ENST00000565354 CASTP20810 708 aaKnown RBP20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms