RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 NMIQ13287 307 aaPredicted RBP20.36■□□□□ 0.85
VPS9D1-203ENST00000563798 TRIM60Q495X7 471 aa20.36■□□□□ 0.85
VPS9D1-203ENST00000563798 CCSAPQ6IQ19 270 aaPredicted RBP20.36■□□□□ 0.85
VPS9D1-203ENST00000563798 ZNF589Q86UQ0 364 aaPredicted RBP20.36■□□□□ 0.85
VPS9D1-203ENST00000563798 PLEKHM2Q8IWE5 1019 aa20.36■□□□□ 0.85
VPS9D1-203ENST00000563798 FAM133AQ8N9E0 248 aa20.36■□□□□ 0.85
VPS9D1-203ENST00000563798 KLHDC9Q8NEP7 349 aa20.36■□□□□ 0.85
VPS9D1-203ENST00000563798 ABHD16BQ9H3Z7 469 aa20.36■□□□□ 0.85
VPS9D1-203ENST00000563798 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.36■□□□□ 0.85
VPS9D1-203ENST00000563798 CCDC171Q6TFL3 1326 aa20.35■□□□□ 0.85
VPS9D1-203ENST00000563798 DUSP11O75319 330 aaKnown RBP20.35■□□□□ 0.85
VPS9D1-203ENST00000563798 IGHDP01880 384 aa20.35■□□□□ 0.85
VPS9D1-203ENST00000563798 SLC4A3P48751 1232 aa20.35■□□□□ 0.85
VPS9D1-203ENST00000563798 ACVR2BQ13705 512 aa20.35■□□□□ 0.85
VPS9D1-203ENST00000563798 BTNL9Q6UXG8 535 aa20.35■□□□□ 0.85
VPS9D1-203ENST00000563798 DCAF4Q8WV16 495 aa20.35■□□□□ 0.85
VPS9D1-203ENST00000563798 FERMT2Q96AC1 680 aa20.35■□□□□ 0.85
VPS9D1-203ENST00000563798 AGBL1Q96MI9 1066 aa20.35■□□□□ 0.85
VPS9D1-203ENST00000563798 PDLIM7Q9NR12 457 aa20.35■□□□□ 0.85
VPS9D1-203ENST00000563798 PRR12Q9ULL5 1215 aa20.35■□□□□ 0.85
VPS9D1-203ENST00000563798 LTBP2Q14767 1821 aa20.34■□□□□ 0.85
VPS9D1-203ENST00000563798 SYNRGQ9UMZ2 1314 aa20.34■□□□□ 0.85
VPS9D1-203ENST00000563798 TRIM6-TRIM34B2RNG4 842 aa20.34■□□□□ 0.85
VPS9D1-203ENST00000563798 MYCNP04198 464 aaPredicted RBP20.34■□□□□ 0.85
VPS9D1-203ENST00000563798 SDSP20132 328 aa20.34■□□□□ 0.85
VPS9D1-203ENST00000563798 CST5P28325 142 aaPredicted RBP20.34■□□□□ 0.85
VPS9D1-203ENST00000563798 NKX3-2P78367 333 aa20.34■□□□□ 0.85
VPS9D1-203ENST00000563798 KCTD1Q719H9 257 aa20.34■□□□□ 0.85
VPS9D1-203ENST00000563798 YTHDC1Q96MU7 727 aaKnown RBP20.34■□□□□ 0.85
VPS9D1-203ENST00000563798 KATNBL1Q9H079 304 aa20.34■□□□□ 0.85
VPS9D1-203ENST00000563798 A1CFQ9NQ94 594 aaKnown RBP20.34■□□□□ 0.85
VPS9D1-203ENST00000563798 RNF146Q9NTX7 359 aa20.34■□□□□ 0.85
VPS9D1-203ENST00000563798 A0A1W2PQ45 241 aaPredicted RBP20.33■□□□□ 0.85
VPS9D1-203ENST00000563798 A0A1W2PQY0 241 aa20.33■□□□□ 0.85
VPS9D1-203ENST00000563798 MOXD2PA6NHM9 499 aa20.33■□□□□ 0.85
VPS9D1-203ENST00000563798 TOP1P11387 765 aaKnown RBP20.33■□□□□ 0.85
VPS9D1-203ENST00000563798 NT5C2P49902 561 aa20.33■□□□□ 0.85
VPS9D1-203ENST00000563798 MFAP1P55081 439 aaKnown RBP20.33■□□□□ 0.85
VPS9D1-203ENST00000563798 TLE2Q04725 743 aa20.33■□□□□ 0.85
VPS9D1-203ENST00000563798 B4GALNT3Q6L9W6 998 aa20.33■□□□□ 0.85
VPS9D1-203ENST00000563798 ARMCX2Q7L311 632 aa20.33■□□□□ 0.85
VPS9D1-203ENST00000563798 LENG1Q96BZ8 264 aaPredicted RBP20.33■□□□□ 0.85
VPS9D1-203ENST00000563798 TTC14Q96N46 770 aa20.33■□□□□ 0.85
VPS9D1-203ENST00000563798 UPF3AQ9H1J1 476 aaKnown RBP20.33■□□□□ 0.85
VPS9D1-203ENST00000563798 ZHX1Q9UKY1 873 aaPredicted RBP20.33■□□□□ 0.85
VPS9D1-203ENST00000563798 POTEB2H3BUK9 544 aa20.32■□□□□ 0.84
VPS9D1-203ENST00000563798 ACLYP53396 1101 aa20.32■□□□□ 0.84
VPS9D1-203ENST00000563798 IKQ13123 557 aaPredicted RBP20.32■□□□□ 0.84
VPS9D1-203ENST00000563798 AKNAD1Q5T1N1 836 aa20.32■□□□□ 0.84
VPS9D1-203ENST00000563798 CCDC144CPQ8IYA2 1237 aa20.32■□□□□ 0.84
VPS9D1-203ENST00000563798 EXOC6Q8TAG9 804 aa20.32■□□□□ 0.84
VPS9D1-203ENST00000563798 RILPL2Q969X0 211 aa20.32■□□□□ 0.84
VPS9D1-203ENST00000563798 TOX2Q96NM4 488 aa20.32■□□□□ 0.84
VPS9D1-203ENST00000563798 TRERF1Q96PN7 1200 aa20.32■□□□□ 0.84
VPS9D1-203ENST00000563798 TMEM47Q9BQJ4 181 aa20.32■□□□□ 0.84
VPS9D1-203ENST00000563798 RANBP17Q9H2T7 1088 aaKnown RBP20.32■□□□□ 0.84
VPS9D1-203ENST00000563798 HOMER2Q9NSB8 354 aa20.32■□□□□ 0.84
VPS9D1-203ENST00000563798 TRIM43BA6NCK2 446 aa20.31■□□□□ 0.84
VPS9D1-203ENST00000563798 SOWAHBA6NEL2 793 aa20.31■□□□□ 0.84
VPS9D1-203ENST00000563798 ICAM1P05362 532 aa20.31■□□□□ 0.84
VPS9D1-203ENST00000563798 GJA9P57773 515 aa20.31■□□□□ 0.84
VPS9D1-203ENST00000563798 CNTN2Q02246 1040 aa20.31■□□□□ 0.84
VPS9D1-203ENST00000563798 CCDC144BQ3MJ40 725 aa20.31■□□□□ 0.84
VPS9D1-203ENST00000563798 RASGRP2Q7LDG7 609 aa20.31■□□□□ 0.84
VPS9D1-203ENST00000563798 ANKRD33Q7Z3H0 272 aa20.31■□□□□ 0.84
VPS9D1-203ENST00000563798 NUP133Q8WUM0 1156 aa20.31■□□□□ 0.84
VPS9D1-203ENST00000563798 TRIM43Q96BQ3 446 aaPredicted RBP20.31■□□□□ 0.84
VPS9D1-203ENST00000563798 ISY1Q9ULR0 285 aaKnown RBP20.31■□□□□ 0.84
VPS9D1-203ENST00000563798 ASB14A6NK59 587 aa20.3■□□□□ 0.84
VPS9D1-203ENST00000563798 KIAA0355O15063 1070 aa20.3■□□□□ 0.84
VPS9D1-203ENST00000563798 ADCY6O43306 1168 aa20.3■□□□□ 0.84
VPS9D1-203ENST00000563798 ALAS1P13196 640 aa20.3■□□□□ 0.84
VPS9D1-203ENST00000563798 KCNA10Q16322 511 aa20.3■□□□□ 0.84
VPS9D1-203ENST00000563798 FAM109BQ6ICB4 259 aaPredicted RBP20.3■□□□□ 0.84
VPS9D1-203ENST00000563798 MFSD6Q6ZSS7 791 aa20.3■□□□□ 0.84
VPS9D1-203ENST00000563798 SH3RF1Q7Z6J0 888 aa20.3■□□□□ 0.84
VPS9D1-203ENST00000563798 RNF41Q9H4P4 317 aaPredicted RBP20.3■□□□□ 0.84
VPS9D1-203ENST00000563798 TOMM22Q9NS69 142 aa20.3■□□□□ 0.84
VPS9D1-203ENST00000563798 ELP1O95163 1332 aa20.29■□□□□ 0.84
VPS9D1-203ENST00000563798 CLTBP09497 229 aa20.29■□□□□ 0.84
VPS9D1-203ENST00000563798 SNHG28P0DPA3 235 aa20.29■□□□□ 0.84
VPS9D1-203ENST00000563798 MUM1L1Q5H9M0 696 aa20.29■□□□□ 0.84
VPS9D1-203ENST00000563798 RRP12Q5JTH9 1297 aaKnown RBP20.29■□□□□ 0.84
VPS9D1-203ENST00000563798 CCDC174Q6PII3 467 aa20.29■□□□□ 0.84
VPS9D1-203ENST00000563798 TBC1D10CQ8IV04 446 aa20.29■□□□□ 0.84
VPS9D1-203ENST00000563798 DEFB123Q8N688 67 aa20.29■□□□□ 0.84
VPS9D1-203ENST00000563798 PCSK9Q8NBP7 692 aaKnown RBP20.29■□□□□ 0.84
VPS9D1-203ENST00000563798 BADQ92934 168 aa20.29■□□□□ 0.84
VPS9D1-203ENST00000563798 PRDM5Q9NQX1 630 aaPredicted RBP20.29■□□□□ 0.84
VPS9D1-203ENST00000563798 STARD7Q9NQZ5 370 aa20.29■□□□□ 0.84
VPS9D1-203ENST00000563798 CYP39A1Q9NYL5 469 aa20.29■□□□□ 0.84
VPS9D1-203ENST00000563798 PNMA2Q9UL42 364 aa20.29■□□□□ 0.84
VPS9D1-203ENST00000563798 ASTN1O14525 1302 aa20.28■□□□□ 0.84
VPS9D1-203ENST00000563798 MYADML2A6NDP7 307 aa20.28■□□□□ 0.84
VPS9D1-203ENST00000563798 HIP1O00291 1037 aa20.28■□□□□ 0.84
VPS9D1-203ENST00000563798 CTAGE5O15320 804 aa20.28■□□□□ 0.84
VPS9D1-203ENST00000563798 PDHBP11177 359 aa20.28■□□□□ 0.84
VPS9D1-203ENST00000563798 HAND2P61296 217 aa20.28■□□□□ 0.84
VPS9D1-203ENST00000563798 CCDC96Q2M329 555 aa20.28■□□□□ 0.84
VPS9D1-203ENST00000563798 SYDE2Q5VT97 1194 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms