RNA–Protein interactions for RNA: ENST00000563790.5

HDGFL3-204, Transcript of HDGF like 3, humanhuman

TSL 3

Gene HDGFL3, Length 934 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-204ENST00000563790 UPF3AQ9H1J1 476 aaKnown RBP13.55□□□□□ -0.24
HDGFL3-204ENST00000563790 DDX4Q9NQI0 724 aaKnown RBP13.55□□□□□ -0.24
HDGFL3-204ENST00000563790 CLSPNQ9HAW4 1339 aa13.55□□□□□ -0.24
HDGFL3-204ENST00000563790 ASNSP08243 561 aa13.54□□□□□ -0.24
HDGFL3-204ENST00000563790 WDR5P61964 334 aaKnown RBP13.54□□□□□ -0.24
HDGFL3-204ENST00000563790 IFIT5Q13325 482 aaKnown RBP13.54□□□□□ -0.24
HDGFL3-204ENST00000563790 KDF1Q8NAX2 398 aaPredicted RBP13.54□□□□□ -0.24
HDGFL3-204ENST00000563790 PHF7Q9BWX1 381 aaPredicted RBP13.54□□□□□ -0.24
HDGFL3-204ENST00000563790 TIMELESSQ9UNS1 1208 aa13.54□□□□□ -0.24
HDGFL3-204ENST00000563790 KIF16BQ96L93 1317 aa13.54□□□□□ -0.24
HDGFL3-204ENST00000563790 ASXL3Q9C0F0 2248 aa13.54□□□□□ -0.24
HDGFL3-204ENST00000563790 H3BNC9 293 aa13.53□□□□□ -0.24
HDGFL3-204ENST00000563790 ERCC3P19447 782 aa13.53□□□□□ -0.24
HDGFL3-204ENST00000563790 GJA9P57773 515 aa13.53□□□□□ -0.24
HDGFL3-204ENST00000563790 HYAL1Q12794 435 aa13.53□□□□□ -0.24
HDGFL3-204ENST00000563790 GCKRQ14397 625 aa13.53□□□□□ -0.24
HDGFL3-204ENST00000563790 SOWAHCQ53LP3 525 aaPredicted RBP13.53□□□□□ -0.24
HDGFL3-204ENST00000563790 GNASQ5JWF2 1037 aa13.53□□□□□ -0.24
HDGFL3-204ENST00000563790 USP17L2Q6R6M4 530 aa13.53□□□□□ -0.24
HDGFL3-204ENST00000563790 CATSPERGQ6ZRH7 1159 aa13.53□□□□□ -0.24
HDGFL3-204ENST00000563790 UBALD2Q8IYN6 164 aa13.53□□□□□ -0.24
HDGFL3-204ENST00000563790 SMRP1Q8NCR6 262 aa13.53□□□□□ -0.24
HDGFL3-204ENST00000563790 ANKFY1Q9P2R3 1169 aa13.53□□□□□ -0.24
HDGFL3-204ENST00000563790 FAM184BQ9ULE4 1060 aa13.53□□□□□ -0.24
HDGFL3-204ENST00000563790 GRIN2DO15399 1336 aa13.53□□□□□ -0.24
HDGFL3-204ENST00000563790 SPDYE16A6NNV3 312 aaPredicted RBP13.52□□□□□ -0.25
HDGFL3-204ENST00000563790 ITGA7Q13683 1181 aa13.52□□□□□ -0.25
HDGFL3-204ENST00000563790 ZC3H14Q6PJT7 736 aaKnown RBP13.52□□□□□ -0.25
HDGFL3-204ENST00000563790 LDHAL6AQ6ZMR3 332 aa13.52□□□□□ -0.25
HDGFL3-204ENST00000563790 SUMF1Q8NBK3 374 aa13.52□□□□□ -0.25
HDGFL3-204ENST00000563790 RPGRIP1Q96KN7 1286 aa13.52□□□□□ -0.25
HDGFL3-204ENST00000563790 C12orf42Q96LP6 360 aa13.52□□□□□ -0.25
HDGFL3-204ENST00000563790 SPC25Q9HBM1 224 aa13.52□□□□□ -0.25
HDGFL3-204ENST00000563790 CNPY2Q9Y2B0 182 aa13.52□□□□□ -0.25
HDGFL3-204ENST00000563790 SALL1Q9NSC2 1324 aa13.51□□□□□ -0.25
HDGFL3-204ENST00000563790 CASP7P55210 303 aa13.51□□□□□ -0.25
HDGFL3-204ENST00000563790 RRP1P56182 461 aaKnown RBP13.51□□□□□ -0.25
HDGFL3-204ENST00000563790 DEFB103AP81534 67 aa13.51□□□□□ -0.25
HDGFL3-204ENST00000563790 EPC2Q52LR7 807 aa13.51□□□□□ -0.25
HDGFL3-204ENST00000563790 ZBTB33Q86T24 672 aa13.51□□□□□ -0.25
HDGFL3-204ENST00000563790 DTWD2Q8NBA8 298 aa13.51□□□□□ -0.25
HDGFL3-204ENST00000563790 CDCA7LQ96GN5 454 aa13.51□□□□□ -0.25
HDGFL3-204ENST00000563790 SAMD11Q96NU1 681 aa13.51□□□□□ -0.25
HDGFL3-204ENST00000563790 FTOQ9C0B1 505 aaKnown RBP eCLIP13.51□□□□□ -0.25
HDGFL3-204ENST00000563790 CNNM1Q9NRU3 951 aa13.51□□□□□ -0.25
HDGFL3-204ENST00000563790 MAP3K2Q9Y2U5 619 aa13.51□□□□□ -0.25
HDGFL3-204ENST00000563790 COL12A1Q99715 3063 aa13.51□□□□□ -0.25
HDGFL3-204ENST00000563790 NEURL1BA8MQ27 555 aa13.5□□□□□ -0.25
HDGFL3-204ENST00000563790 CTAGE5O15320 804 aa13.5□□□□□ -0.25
HDGFL3-204ENST00000563790 PER1O15534 1290 aaPredicted RBP13.5□□□□□ -0.25
HDGFL3-204ENST00000563790 NKX3-2P78367 333 aa13.5□□□□□ -0.25
HDGFL3-204ENST00000563790 ZNF200P98182 395 aaPredicted RBP13.5□□□□□ -0.25
HDGFL3-204ENST00000563790 GPM6BQ13491 265 aa13.5□□□□□ -0.25
HDGFL3-204ENST00000563790 CWF19L2Q2TBE0 894 aaKnown RBP13.5□□□□□ -0.25
HDGFL3-204ENST00000563790 CAVIN4Q5BKX8 364 aa13.5□□□□□ -0.25
HDGFL3-204ENST00000563790 WDR66Q8TBY9 1149 aa13.5□□□□□ -0.25
HDGFL3-204ENST00000563790 SPATC1LQ9H0A9 340 aa13.5□□□□□ -0.25
HDGFL3-204ENST00000563790 MROH8Q9H579 483 aa13.5□□□□□ -0.25
HDGFL3-204ENST00000563790 DIS3Q9Y2L1 958 aaKnown RBP13.5□□□□□ -0.25
HDGFL3-204ENST00000563790 UBR5O95071 2799 aaPredicted RBP13.49□□□□□ -0.25
HDGFL3-204ENST00000563790 SCN10AQ9Y5Y9 1956 aa13.49□□□□□ -0.25
HDGFL3-204ENST00000563790 CABYRO75952 493 aa13.49□□□□□ -0.25
HDGFL3-204ENST00000563790 DDX58O95786 925 aaKnown RBP13.49□□□□□ -0.25
HDGFL3-204ENST00000563790 PICALMQ13492 652 aa13.49□□□□□ -0.25
HDGFL3-204ENST00000563790 CWF19L1Q69YN2 538 aaKnown RBP13.49□□□□□ -0.25
HDGFL3-204ENST00000563790 PLEKHF1Q96S99 279 aa13.49□□□□□ -0.25
HDGFL3-204ENST00000563790 CRBNQ96SW2 442 aa13.49□□□□□ -0.25
HDGFL3-204ENST00000563790 SIL1Q9H173 461 aa13.49□□□□□ -0.25
HDGFL3-204ENST00000563790 MFSD1Q9H3U5 465 aa13.49□□□□□ -0.25
HDGFL3-204ENST00000563790 SRRM3A6NNA2 597 aaPredicted RBP13.48□□□□□ -0.25
HDGFL3-204ENST00000563790 ADCY6O43306 1168 aa13.48□□□□□ -0.25
HDGFL3-204ENST00000563790 FCER1AP12319 257 aa13.48□□□□□ -0.25
HDGFL3-204ENST00000563790 AOC1P19801 751 aa13.48□□□□□ -0.25
HDGFL3-204ENST00000563790 PRDX5P30044 214 aa13.48□□□□□ -0.25
HDGFL3-204ENST00000563790 JAG1P78504 1218 aa13.48□□□□□ -0.25
HDGFL3-204ENST00000563790 COASYQ13057 564 aa13.48□□□□□ -0.25
HDGFL3-204ENST00000563790 ADAM15Q13444 863 aa13.48□□□□□ -0.25
HDGFL3-204ENST00000563790 MTMR3Q13615 1198 aa13.48□□□□□ -0.25
HDGFL3-204ENST00000563790 UNQ6494/PRO21346Q6UXR6 183 aa13.48□□□□□ -0.25
HDGFL3-204ENST00000563790 KREMEN2Q8NCW0 462 aa13.48□□□□□ -0.25
HDGFL3-204ENST00000563790 INCENPQ9NQS7 918 aa13.48□□□□□ -0.25
HDGFL3-204ENST00000563790 USP15Q9Y4E8 981 aaPredicted RBP13.48□□□□□ -0.25
HDGFL3-204ENST00000563790 LAMA1P25391 3075 aa13.48□□□□□ -0.25
HDGFL3-204ENST00000563790 C1QTNF9BB2RNN3 333 aa13.47□□□□□ -0.25
HDGFL3-204ENST00000563790 CHL1O00533 1208 aa13.47□□□□□ -0.25
HDGFL3-204ENST00000563790 LINC01565O15544 149 aa13.47□□□□□ -0.25
HDGFL3-204ENST00000563790 BRD1O95696 1058 aa13.47□□□□□ -0.25
HDGFL3-204ENST00000563790 IQCF3P0C7M6 154 aa13.47□□□□□ -0.25
HDGFL3-204ENST00000563790 C1QTNF9P0C862 333 aa13.47□□□□□ -0.25
HDGFL3-204ENST00000563790 CYP2C9P11712 490 aa13.47□□□□□ -0.25
HDGFL3-204ENST00000563790 ATF7P17544 494 aaPredicted RBP13.47□□□□□ -0.25
HDGFL3-204ENST00000563790 CXCL17Q6UXB2 119 aa13.47□□□□□ -0.25
HDGFL3-204ENST00000563790 ZNF594Q96JF6 807 aaPredicted RBP13.47□□□□□ -0.25
HDGFL3-204ENST00000563790 ALDH8A1Q9H2A2 487 aaPredicted RBP13.47□□□□□ -0.25
HDGFL3-204ENST00000563790 GINM1Q9NU53 330 aa13.47□□□□□ -0.25
HDGFL3-204ENST00000563790 NCDNQ9UBB6 729 aa13.47□□□□□ -0.25
HDGFL3-204ENST00000563790 HERC5Q9UII4 1024 aaKnown RBP13.47□□□□□ -0.25
HDGFL3-204ENST00000563790 SORCS3Q9UPU3 1222 aa13.47□□□□□ -0.25
HDGFL3-204ENST00000563790 FOCADQ5VW36 1801 aa13.47□□□□□ -0.25
HDGFL3-204ENST00000563790 PITPNM1O00562 1244 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms