RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 GSTA5Q7RTV2 222 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 AFAP1L2Q8N4X5 818 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 MMADHCQ9H3L0 296 aaPredicted RBP6.84□□□□□ -1.31
CLK3-212ENST00000563418 MMRN2Q9H8L6 949 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 RTEL1Q9NZ71 1219 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 TROQ12816 1431 aaPredicted RBP6.84□□□□□ -1.31
CLK3-212ENST00000563418 SYCP2Q9BX26 1530 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 KRT5P13647 590 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 MTA1Q13330 715 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 MCMDC2Q4G0Z9 681 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 PEX26Q7Z412 305 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 AFAP1Q8N556 730 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 FERMT2Q96AC1 680 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 OSBPL3Q9H4L5 887 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 PFDN4Q9NQP4 134 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 DLGAP2Q9P1A6 1054 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 USP27XA6NNY8 438 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 MYBL2P10244 700 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 EEF1GP26641 437 aaKnown RBP6.84□□□□□ -1.31
CLK3-212ENST00000563418 AARSP49588 968 aaKnown RBP eCLIP6.84□□□□□ -1.31
CLK3-212ENST00000563418 PSMC1P62191 440 aaKnown RBP6.84□□□□□ -1.31
CLK3-212ENST00000563418 PTGISQ16647 500 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 CC2D2BQ6DHV5 1058 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 KLHL7Q8IXQ5 586 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 HELBQ8NG08 1087 aaPredicted RBP6.84□□□□□ -1.31
CLK3-212ENST00000563418 RIOK1Q9BRS2 568 aaKnown RBP6.84□□□□□ -1.31
CLK3-212ENST00000563418 EFHD1Q9BUP0 239 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 LRCH1Q9Y2L9 728 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 SH3GLB1Q9Y371 365 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 ATP6V0A2Q9Y487 856 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 COMMD3-BMI1R4GMX3 469 aa6.84□□□□□ -1.31
CLK3-212ENST00000563418 PASKQ96RG2 1323 aa6.84□□□□□ -1.32
CLK3-212ENST00000563418 ADCY3O60266 1144 aa6.84□□□□□ -1.32
CLK3-212ENST00000563418 SERPINB4P48594 390 aa6.84□□□□□ -1.32
CLK3-212ENST00000563418 CCDC144BQ3MJ40 725 aa6.84□□□□□ -1.32
CLK3-212ENST00000563418 CNNM4Q6P4Q7 775 aa6.84□□□□□ -1.32
CLK3-212ENST00000563418 TMTC3Q6ZXV5 915 aa6.84□□□□□ -1.32
CLK3-212ENST00000563418 RBM12BQ8IXT5 1001 aaKnown RBP6.84□□□□□ -1.32
CLK3-212ENST00000563418 CCDC144CPQ8IYA2 1237 aa6.84□□□□□ -1.32
CLK3-212ENST00000563418 ICA1LQ8NDH6 482 aa6.84□□□□□ -1.32
CLK3-212ENST00000563418 ENOX1Q8TC92 643 aaKnown RBP6.84□□□□□ -1.32
CLK3-212ENST00000563418 EPB41L5Q9HCM4 733 aa6.84□□□□□ -1.32
CLK3-212ENST00000563418 ATP6V1G2O95670 118 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 CCDC159P0C7I6 412 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 SEC16BQ96JE7 1060 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 USP40Q9NVE5 1235 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 TRAPPC8Q9Y2L5 1435 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 IFT140Q96RY7 1462 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 CCDC188H7C350 402 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 FESP07332 822 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 SCTRP47872 440 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 AP1B1Q10567 949 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 CWF19L1Q69YN2 538 aaKnown RBP6.83□□□□□ -1.32
CLK3-212ENST00000563418 CTAGE3PQ8IX95 158 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 RAPGEF4Q8WZA2 1011 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 KIFC3Q9BVG8 833 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 TBKBP1A7MCY6 615 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 ECM2O94769 699 aaPredicted RBP6.83□□□□□ -1.32
CLK3-212ENST00000563418 KRT15P19012 456 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 USH1GQ495M9 461 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 KRT80Q6KB66 452 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 TRAIPQ9BWF2 469 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 MBIPQ9NS73 344 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 ARL2BPQ9Y2Y0 163 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 CBFA2T3O75081 653 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 SERPINB8P50452 374 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 TUBA1BP68363 451 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 TUBA1AQ71U36 451 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 TRPM8Q7Z2W7 1104 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 DDI1Q8WTU0 396 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 SERPINI1Q99574 410 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 ETNK1Q9HBU6 452 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 KCNJ18B7U540 433 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 PGRMC1O00264 195 aaKnown RBP6.83□□□□□ -1.32
CLK3-212ENST00000563418 KCNJ12Q14500 433 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 E4F1Q66K89 784 aaPredicted RBP6.83□□□□□ -1.32
CLK3-212ENST00000563418 SIRT1Q96EB6 747 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 NR1H4Q96RI1 486 aaPredicted RBP6.83□□□□□ -1.32
CLK3-212ENST00000563418 FMO2Q99518 471 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 FANCLQ9NW38 375 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 TMOD2Q9NZR1 351 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 LCMT1Q9UIC8 334 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 DBNLQ9UJU6 430 aaKnown RBP6.83□□□□□ -1.32
CLK3-212ENST00000563418 NSFL1CQ9UNZ2 370 aaKnown RBP6.83□□□□□ -1.32
CLK3-212ENST00000563418 TRAF3IP3Q9Y228 551 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 KLF18A0A0U1RQI7 1052 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 SBNO1A3KN83 1393 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 WDR46O15213 610 aaKnown RBP6.83□□□□□ -1.32
CLK3-212ENST00000563418 STK10O94804 968 aaKnown RBP6.83□□□□□ -1.32
CLK3-212ENST00000563418 CCDC166P0CW27 439 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 MCF2P10911 925 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 GSPT1P15170 499 aaKnown RBP6.83□□□□□ -1.32
CLK3-212ENST00000563418 RAP1GDS1P52306 607 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 MED21Q13503 144 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 FAM43BQ6ZT52 329 aaPredicted RBP6.83□□□□□ -1.32
CLK3-212ENST00000563418 NDEL1Q9GZM8 345 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 POLE3Q9NRF9 147 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 CTNNAL1Q9UBT7 734 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 SH3BP1Q9Y3L3 701 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 NOC2LQ9Y3T9 749 aaKnown RBP6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms