RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 RNF146Q9NTX7 359 aa19.83■□□□□ 0.77
CLK3-210ENST00000563112 RBM27Q9P2N5 1060 aaKnown RBP19.83■□□□□ 0.77
CLK3-210ENST00000563112 ZMYND8Q9ULU4 1186 aaPredicted RBP19.83■□□□□ 0.77
CLK3-210ENST00000563112 SYNGAP1Q96PV0 1343 aa19.82■□□□□ 0.76
CLK3-210ENST00000563112 ALAS1P13196 640 aa19.82■□□□□ 0.76
CLK3-210ENST00000563112 RUFY2Q8WXA3 655 aa19.82■□□□□ 0.76
CLK3-210ENST00000563112 AGBL1Q96MI9 1066 aa19.82■□□□□ 0.76
CLK3-210ENST00000563112 AKR1A1P14550 325 aa19.81■□□□□ 0.76
CLK3-210ENST00000563112 LRRC26Q2I0M4 334 aa19.81■□□□□ 0.76
CLK3-210ENST00000563112 MAMDC4Q6UXC1 1216 aa19.81■□□□□ 0.76
CLK3-210ENST00000563112 IQCA1Q86XH1 822 aa19.81■□□□□ 0.76
CLK3-210ENST00000563112 TRERF1Q96PN7 1200 aa19.81■□□□□ 0.76
CLK3-210ENST00000563112 XPNPEP3Q9NQH7 507 aa19.81■□□□□ 0.76
CLK3-210ENST00000563112 SMCHD1A6NHR9 2005 aa19.81■□□□□ 0.76
CLK3-210ENST00000563112 ZNF536O15090 1300 aa19.8■□□□□ 0.76
CLK3-210ENST00000563112 NEDD4P46934 1319 aa19.8■□□□□ 0.76
CLK3-210ENST00000563112 POTEB2H3BUK9 544 aa19.8■□□□□ 0.76
CLK3-210ENST00000563112 ZNF865P0CJ78 1059 aaPredicted RBP19.8■□□□□ 0.76
CLK3-210ENST00000563112 GSPT1P15170 499 aaKnown RBP19.8■□□□□ 0.76
CLK3-210ENST00000563112 TAL1P17542 331 aaPredicted RBP19.8■□□□□ 0.76
CLK3-210ENST00000563112 SNAP25P60880 206 aa19.8■□□□□ 0.76
CLK3-210ENST00000563112 LRRC41Q15345 812 aa19.8■□□□□ 0.76
CLK3-210ENST00000563112 SYDE2Q5VT97 1194 aa19.8■□□□□ 0.76
CLK3-210ENST00000563112 BTNL9Q6UXG8 535 aa19.8■□□□□ 0.76
CLK3-210ENST00000563112 RASGRP2Q7LDG7 609 aa19.8■□□□□ 0.76
CLK3-210ENST00000563112 RNF180Q86T96 592 aa19.8■□□□□ 0.76
CLK3-210ENST00000563112 DGKHQ86XP1 1220 aa19.8■□□□□ 0.76
CLK3-210ENST00000563112 GPCPD1Q9NPB8 672 aa19.8■□□□□ 0.76
CLK3-210ENST00000563112 ZHX1Q9UKY1 873 aaPredicted RBP19.8■□□□□ 0.76
CLK3-210ENST00000563112 FAM184BQ9ULE4 1060 aa19.8■□□□□ 0.76
CLK3-210ENST00000563112 CCPG1Q9ULG6 757 aa19.8■□□□□ 0.76
CLK3-210ENST00000563112 FRMPD2Q68DX3 1309 aaPredicted RBP19.79■□□□□ 0.76
CLK3-210ENST00000563112 RAD50Q92878 1312 aa19.79■□□□□ 0.76
CLK3-210ENST00000563112 A0A1W2PPC1 479 aa19.79■□□□□ 0.76
CLK3-210ENST00000563112 KDM4AO75164 1064 aa19.79■□□□□ 0.76
CLK3-210ENST00000563112 SYN1P17600 705 aa19.79■□□□□ 0.76
CLK3-210ENST00000563112 SLC16A2P36021 539 aa19.79■□□□□ 0.76
CLK3-210ENST00000563112 FXR1P51114 621 aaKnown RBP eCLIP19.79■□□□□ 0.76
CLK3-210ENST00000563112 ATN1P54259 1190 aaPredicted RBP19.79■□□□□ 0.76
CLK3-210ENST00000563112 TTBK2Q6IQ55 1244 aa19.79■□□□□ 0.76
CLK3-210ENST00000563112 ZKSCAN3Q9BRR0 538 aa19.79■□□□□ 0.76
CLK3-210ENST00000563112 KRT23Q9C075 422 aa19.79■□□□□ 0.76
CLK3-210ENST00000563112 PRO3102Q9H379 93 aa19.79■□□□□ 0.76
CLK3-210ENST00000563112 CNNM2Q9H8M5 875 aa19.79■□□□□ 0.76
CLK3-210ENST00000563112 PNMA2Q9UL42 364 aa19.79■□□□□ 0.76
CLK3-210ENST00000563112 LAMA4Q16363 1823 aa19.79■□□□□ 0.76
CLK3-210ENST00000563112 SNAI1O95863 264 aaPredicted RBP19.78■□□□□ 0.76
CLK3-210ENST00000563112 ICAM1P05362 532 aa19.78■□□□□ 0.76
CLK3-210ENST00000563112 PDHBP11177 359 aa19.78■□□□□ 0.76
CLK3-210ENST00000563112 RANBP17Q9H2T7 1088 aaKnown RBP19.78■□□□□ 0.76
CLK3-210ENST00000563112 ABHD16BQ9H3Z7 469 aa19.78■□□□□ 0.76
CLK3-210ENST00000563112 A1CFQ9NQ94 594 aaKnown RBP19.78■□□□□ 0.76
CLK3-210ENST00000563112 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.78■□□□□ 0.76
CLK3-210ENST00000563112 B4E1Z4 1266 aa19.77■□□□□ 0.76
CLK3-210ENST00000563112 ADCYAP1R1P41586 468 aa19.77■□□□□ 0.76
CLK3-210ENST00000563112 ZNF543Q08ER8 600 aa19.77■□□□□ 0.76
CLK3-210ENST00000563112 ACVR2BQ13705 512 aa19.77■□□□□ 0.76
CLK3-210ENST00000563112 ARMCX2Q7L311 632 aa19.77■□□□□ 0.76
CLK3-210ENST00000563112 FAM133AQ8N9E0 248 aa19.77■□□□□ 0.76
CLK3-210ENST00000563112 GDF15Q99988 308 aa19.77■□□□□ 0.76
CLK3-210ENST00000563112 KAT14Q9H8E8 782 aa19.77■□□□□ 0.76
CLK3-210ENST00000563112 ASB14A6NK59 587 aa19.76■□□□□ 0.75
CLK3-210ENST00000563112 PGK1P00558 417 aa19.76■□□□□ 0.75
CLK3-210ENST00000563112 SNHG28P0DPA3 235 aa19.76■□□□□ 0.75
CLK3-210ENST00000563112 CHMLP26374 656 aa19.76■□□□□ 0.75
CLK3-210ENST00000563112 BMP8BP34820 402 aa19.76■□□□□ 0.75
CLK3-210ENST00000563112 CNTN2Q02246 1040 aa19.76■□□□□ 0.75
CLK3-210ENST00000563112 GPATCH4Q5T3I0 446 aaKnown RBP19.76■□□□□ 0.75
CLK3-210ENST00000563112 NSMFQ6X4W1 530 aa19.76■□□□□ 0.75
CLK3-210ENST00000563112 SLC39A5Q6ZMH5 540 aa19.76■□□□□ 0.75
CLK3-210ENST00000563112 FERMT2Q96AC1 680 aa19.76■□□□□ 0.75
CLK3-210ENST00000563112 ZSCAN10Q96SZ4 725 aaPredicted RBP19.76■□□□□ 0.75
CLK3-210ENST00000563112 PRKAG2Q9UGJ0 569 aa19.76■□□□□ 0.75
CLK3-210ENST00000563112 RTP1P59025 263 aa19.75■□□□□ 0.75
CLK3-210ENST00000563112 MUM1L1Q5H9M0 696 aa19.75■□□□□ 0.75
CLK3-210ENST00000563112 CCDC144CPQ8IYA2 1237 aa19.75■□□□□ 0.75
CLK3-210ENST00000563112 PNMA1Q8ND90 353 aa19.75■□□□□ 0.75
CLK3-210ENST00000563112 ANKS1AQ92625 1134 aa19.75■□□□□ 0.75
CLK3-210ENST00000563112 FGD4Q96M96 766 aa19.75■□□□□ 0.75
CLK3-210ENST00000563112 UBAC1Q9BSL1 405 aa19.75■□□□□ 0.75
CLK3-210ENST00000563112 SPC25Q9HBM1 224 aa19.75■□□□□ 0.75
CLK3-210ENST00000563112 ZSWIM5Q9P217 1185 aa19.75■□□□□ 0.75
CLK3-210ENST00000563112 PHF24Q9UPV7 400 aa19.75■□□□□ 0.75
CLK3-210ENST00000563112 ATP11BQ9Y2G3 1177 aa19.75■□□□□ 0.75
CLK3-210ENST00000563112 DUSP11O75319 330 aaKnown RBP19.74■□□□□ 0.75
CLK3-210ENST00000563112 MAGEA10P43363 369 aaPredicted RBP19.74■□□□□ 0.75
CLK3-210ENST00000563112 TRDNQ13061 729 aa19.74■□□□□ 0.75
CLK3-210ENST00000563112 TSEN34Q9BSV6 310 aaKnown RBP19.74■□□□□ 0.75
CLK3-210ENST00000563112 IL25Q9H293 177 aa19.74■□□□□ 0.75
CLK3-210ENST00000563112 CYP39A1Q9NYL5 469 aa19.74■□□□□ 0.75
CLK3-210ENST00000563112 U3KPZ7 1027 aaPredicted RBP19.74■□□□□ 0.75
CLK3-210ENST00000563112 SOWAHBA6NEL2 793 aa19.73■□□□□ 0.75
CLK3-210ENST00000563112 CCDC144BQ3MJ40 725 aa19.73■□□□□ 0.75
CLK3-210ENST00000563112 LBHD1Q9BQE6 289 aaPredicted RBP19.73■□□□□ 0.75
CLK3-210ENST00000563112 UBE2OQ9C0C9 1292 aaKnown RBP19.73■□□□□ 0.75
CLK3-210ENST00000563112 ADD3Q9UEY8 706 aaKnown RBP19.73■□□□□ 0.75
CLK3-210ENST00000563112 MCM3APO60318 1980 aa19.73■□□□□ 0.75
CLK3-210ENST00000563112 TNKSO95271 1327 aa19.73■□□□□ 0.75
CLK3-210ENST00000563112 RANBP2P49792 3224 aaKnown RBP19.72■□□□□ 0.75
CLK3-210ENST00000563112 ADAMTS4O75173 837 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms