RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 SLF1Q9BQI6 1058 aa15.6■□□□□ 0.09
VPS39-206ENST00000562662 GBA2Q9HCG7 927 aaPredicted RBP15.6■□□□□ 0.09
VPS39-206ENST00000562662 BRMS1Q9HCU9 246 aa15.6■□□□□ 0.09
VPS39-206ENST00000562662 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.6■□□□□ 0.09
VPS39-206ENST00000562662 PCDHA4Q9UN74 947 aa15.6■□□□□ 0.09
VPS39-206ENST00000562662 KCNH4Q9UQ05 1017 aa15.6■□□□□ 0.09
VPS39-206ENST00000562662 A0A0G2JLL6 359 aaPredicted RBP15.59■□□□□ 0.09
VPS39-206ENST00000562662 SMCO2A6NFE2 343 aa15.59■□□□□ 0.09
VPS39-206ENST00000562662 DDX11L8A8MPP1 907 aa15.59■□□□□ 0.09
VPS39-206ENST00000562662 IRF6O14896 467 aa15.59■□□□□ 0.09
VPS39-206ENST00000562662 CELF2O95319 508 aaKnown RBP15.59■□□□□ 0.09
VPS39-206ENST00000562662 EARS2Q5JPH6 523 aaKnown RBP15.59■□□□□ 0.09
VPS39-206ENST00000562662 ATL3Q6DD88 541 aa15.59■□□□□ 0.09
VPS39-206ENST00000562662 PRRT2Q7Z6L0 340 aaPredicted RBP15.59■□□□□ 0.09
VPS39-206ENST00000562662 OTUD5Q96G74 571 aa15.59■□□□□ 0.09
VPS39-206ENST00000562662 ZNF396Q96N95 335 aaPredicted RBP15.59■□□□□ 0.09
VPS39-206ENST00000562662 USP28Q96RU2 1077 aa15.59■□□□□ 0.09
VPS39-206ENST00000562662 GDPD2Q9HCC8 539 aa15.59■□□□□ 0.09
VPS39-206ENST00000562662 TMOD4Q9NZQ9 345 aa15.59■□□□□ 0.09
VPS39-206ENST00000562662 PPP1R9AQ9ULJ8 1098 aa15.59■□□□□ 0.09
VPS39-206ENST00000562662 MYH7BA7E2Y1 1941 aa15.58■□□□□ 0.09
VPS39-206ENST00000562662 GOLGA6L22H0YM25 854 aa15.58■□□□□ 0.08
VPS39-206ENST00000562662 CXCL11O14625 94 aa15.58■□□□□ 0.08
VPS39-206ENST00000562662 FIBPO43427 364 aa15.58■□□□□ 0.08
VPS39-206ENST00000562662 NCLP19338 710 aaKnown RBP15.58■□□□□ 0.08
VPS39-206ENST00000562662 GJA5P36382 358 aa15.58■□□□□ 0.08
VPS39-206ENST00000562662 NOM1Q5C9Z4 860 aaKnown RBP15.58■□□□□ 0.08
VPS39-206ENST00000562662 FBXO11Q86XK2 927 aa15.58■□□□□ 0.08
VPS39-206ENST00000562662 PRPF38AQ8NAV1 312 aaKnown RBP15.58■□□□□ 0.08
VPS39-206ENST00000562662 OPTNQ96CV9 577 aa15.58■□□□□ 0.08
VPS39-206ENST00000562662 AMNQ9BXJ7 453 aa15.58■□□□□ 0.08
VPS39-206ENST00000562662 FTOQ9C0B1 505 aaKnown RBP eCLIP15.58■□□□□ 0.08
VPS39-206ENST00000562662 TANGO6Q9C0B7 1094 aa15.58■□□□□ 0.08
VPS39-206ENST00000562662 C6orf50Q9HD87 102 aa15.58■□□□□ 0.08
VPS39-206ENST00000562662 LMBRD1Q9NUN5 540 aa15.58■□□□□ 0.08
VPS39-206ENST00000562662 TFIP11Q9UBB9 837 aaKnown RBP15.58■□□□□ 0.08
VPS39-206ENST00000562662 FAM205CA6NFA0 338 aa15.57■□□□□ 0.08
VPS39-206ENST00000562662 KIF3CO14782 793 aa15.57■□□□□ 0.08
VPS39-206ENST00000562662 FLOT1O75955 427 aa15.57■□□□□ 0.08
VPS39-206ENST00000562662 GNA11P29992 359 aa15.57■□□□□ 0.08
VPS39-206ENST00000562662 CST9Q5W186 159 aa15.57■□□□□ 0.08
VPS39-206ENST00000562662 CATSPERGQ6ZRH7 1159 aa15.57■□□□□ 0.08
VPS39-206ENST00000562662 C2orf69Q8N8R5 385 aa15.57■□□□□ 0.08
VPS39-206ENST00000562662 RASGRP4Q8TDF6 673 aa15.57■□□□□ 0.08
VPS39-206ENST00000562662 GPBP1L1Q9HC44 474 aaPredicted RBP15.57■□□□□ 0.08
VPS39-206ENST00000562662 RIC8AQ9NPQ8 531 aa15.57■□□□□ 0.08
VPS39-206ENST00000562662 PCDHA6Q9UN73 950 aa15.57■□□□□ 0.08
VPS39-206ENST00000562662 PCDHA8Q9Y5H6 950 aa15.57■□□□□ 0.08
VPS39-206ENST00000562662 PCDHA1Q9Y5I3 950 aa15.57■□□□□ 0.08
VPS39-206ENST00000562662 USP17L15C9J2P7 530 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 USP17L13C9JLJ4 530 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 USP17L11C9JVI0 530 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 USP17L18D6R9N7 530 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 USP17L22D6RA61 530 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 USP17L17D6RBQ6 530 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 USP17L19D6RCP7 530 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 USP17L20D6RJB6 530 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 TAL1P17542 331 aaPredicted RBP15.56■□□□□ 0.08
VPS39-206ENST00000562662 DSG3P32926 999 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 TOB1P50616 345 aaPredicted RBP15.56■□□□□ 0.08
VPS39-206ENST00000562662 ADCY7P51828 1080 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 USP17L24Q0WX57 530 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 MOGSQ13724 837 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 TREML2Q5T2D2 321 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 CCDC174Q6PII3 467 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 PROCA1Q8NCQ7 364 aaPredicted RBP15.56■□□□□ 0.08
VPS39-206ENST00000562662 LEO1Q8WVC0 666 aaPredicted RBP15.56■□□□□ 0.08
VPS39-206ENST00000562662 SLC10A4Q96EP9 437 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 SCAND2PQ9GZW5 306 aaPredicted RBP15.56■□□□□ 0.08
VPS39-206ENST00000562662 SLC38A10Q9HBR0 1119 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 POLR3EQ9NVU0 708 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 RTEL1Q9NZ71 1219 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 CFAP45Q9UL16 551 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 ZNF536O15090 1300 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 PASKQ96RG2 1323 aa15.56■□□□□ 0.08
VPS39-206ENST00000562662 ELP1O95163 1332 aa15.55■□□□□ 0.08
VPS39-206ENST00000562662 MYPNQ86TC9 1320 aa15.55■□□□□ 0.08
VPS39-206ENST00000562662 PRPF40AO75400 957 aaKnown RBP15.55■□□□□ 0.08
VPS39-206ENST00000562662 FDX1P10109 184 aa15.55■□□□□ 0.08
VPS39-206ENST00000562662 PTMSP20962 102 aa15.55■□□□□ 0.08
VPS39-206ENST00000562662 NASPP49321 788 aaPredicted RBP15.55■□□□□ 0.08
VPS39-206ENST00000562662 CLK2P49760 499 aaKnown RBP15.55■□□□□ 0.08
VPS39-206ENST00000562662 USH1GQ495M9 461 aa15.55■□□□□ 0.08
VPS39-206ENST00000562662 RILPL1Q5EBL4 403 aa15.55■□□□□ 0.08
VPS39-206ENST00000562662 SAMD1Q6SPF0 538 aaPredicted RBP15.55■□□□□ 0.08
VPS39-206ENST00000562662 REPS2Q8NFH8 660 aa15.55■□□□□ 0.08
VPS39-206ENST00000562662 BICD2Q8TD16 824 aa15.55■□□□□ 0.08
VPS39-206ENST00000562662 ATG4CQ96DT6 458 aa15.55■□□□□ 0.08
VPS39-206ENST00000562662 WNK4Q96J92 1243 aa15.55■□□□□ 0.08
VPS39-206ENST00000562662 RCOR1Q9UKL0 485 aa15.55■□□□□ 0.08
VPS39-206ENST00000562662 ADAMTS5Q9UNA0 930 aa15.55■□□□□ 0.08
VPS39-206ENST00000562662 CLIC4Q9Y696 253 aa15.55■□□□□ 0.08
VPS39-206ENST00000562662 OPLAHO14841 1288 aa15.54■□□□□ 0.08
VPS39-206ENST00000562662 ICAM1P05362 532 aa15.54■□□□□ 0.08
VPS39-206ENST00000562662 CEBPZQ03701 1054 aaKnown RBP15.54■□□□□ 0.08
VPS39-206ENST00000562662 TRAF1Q13077 416 aa15.54■□□□□ 0.08
VPS39-206ENST00000562662 CSPP1Q1MSJ5 1256 aa15.54■□□□□ 0.08
VPS39-206ENST00000562662 ANO1Q5XXA6 986 aa15.54■□□□□ 0.08
VPS39-206ENST00000562662 GADL1Q6ZQY3 521 aa15.54■□□□□ 0.08
VPS39-206ENST00000562662 PIK3AP1Q6ZUJ8 805 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 104.3 ms