RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PANK2Q9BZ23 570 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 NT5C3AQ9H0P0 336 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 GOLPH3LQ9H4A5 285 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 CBX8Q9HC52 389 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 ZNF70Q9UC06 446 aaPredicted RBP8.52□□□□□ -1.05
VPS39-204ENST00000561818 STK17AQ9UEE5 414 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 PCDHB6Q9Y5E3 794 aa8.52□□□□□ -1.05
VPS39-204ENST00000561818 PSMD14O00487 310 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 POLR2DO15514 142 aaKnown RBP8.51□□□□□ -1.05
VPS39-204ENST00000561818 CCP110O43303 1012 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 CYTH3O43739 400 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 KIF20AO95235 890 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 ADCY5O95622 1261 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 TUBB4AP04350 444 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 BMP3P12645 472 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 KCNA3P22001 575 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 CLCN1P35523 988 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 USP14P54578 494 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 NFIAQ12857 509 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 NPY5RQ15761 445 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 HAUS3Q68CZ6 603 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 USP17L2Q6R6M4 530 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 DEFB132Q7Z7B7 95 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 STAG2Q8N3U4 1231 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 SPDYE1Q8NFV5 336 aaPredicted RBP8.51□□□□□ -1.05
VPS39-204ENST00000561818 SPATA20Q8TB22 786 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 TRIM5Q9C035 493 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 FTOQ9C0B1 505 aaKnown RBP eCLIP8.51□□□□□ -1.05
VPS39-204ENST00000561818 DNAJC25Q9H1X3 360 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 AS3MTQ9HBK9 375 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 MYOZ2Q9NPC6 264 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 FEM1BQ9UK73 627 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 PCDHA6Q9UN73 950 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 ZKSCAN5Q9Y2L8 839 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 TMX2Q9Y320 296 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 PCDHA8Q9Y5H6 950 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 FER1L6Q2WGJ9 1857 aa8.51□□□□□ -1.05
VPS39-204ENST00000561818 ARFGEF1Q9Y6D6 1849 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 SCN9AQ15858 1988 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 YDJCA8MPS7 323 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 F5H6K3 240 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 H7C1D1 291 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 PIK3CDO00329 1044 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 EEF2P13639 858 aaKnown RBP8.5□□□□□ -1.05
VPS39-204ENST00000561818 MUTP22033 750 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 MCM7P33993 719 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 BRCA1P38398 1863 aaKnown RBP8.5□□□□□ -1.05
VPS39-204ENST00000561818 STAT6P42226 847 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 KLRC3Q07444 240 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 IKQ13123 557 aaPredicted RBP8.5□□□□□ -1.05
VPS39-204ENST00000561818 KCNB1Q14721 858 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 SYDE2Q5VT97 1194 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 FOXR2Q6PJQ5 311 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.5□□□□□ -1.05
VPS39-204ENST00000561818 HOMER1Q86YM7 354 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 ADGRF4Q8IZF3 695 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 CMTR1Q8N1G2 835 aaKnown RBP8.5□□□□□ -1.05
VPS39-204ENST00000561818 LRRC47Q8N1G4 583 aaKnown RBP8.5□□□□□ -1.05
VPS39-204ENST00000561818 CCDC150Q8NCX0 1101 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 CCDC112Q8NEF3 446 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 ERMNQ8TAM6 284 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 NKX2-3Q8TAU0 364 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 ENOX1Q8TC92 643 aaKnown RBP8.5□□□□□ -1.05
VPS39-204ENST00000561818 NOC3LQ8WTT2 800 aaKnown RBP8.5□□□□□ -1.05
VPS39-204ENST00000561818 IQCDQ96DY2 449 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 ZBED3Q96IU2 234 aaPredicted RBP8.5□□□□□ -1.05
VPS39-204ENST00000561818 CSRNP2Q9H175 543 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 TDRD3Q9H7E2 651 aaKnown RBP8.5□□□□□ -1.05
VPS39-204ENST00000561818 PSTPIP2Q9H939 334 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 DISC1Q9NRI5 854 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 ZNF277Q9NRM2 450 aaPredicted RBP8.5□□□□□ -1.05
VPS39-204ENST00000561818 GJB4Q9NTQ9 266 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 CLEC11AQ9Y240 323 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 PITPNM2Q9BZ72 1349 aa8.5□□□□□ -1.05
VPS39-204ENST00000561818 ZC3H4Q9UPT8 1303 aaKnown RBP8.5□□□□□ -1.05
VPS39-204ENST00000561818 VWA3AA6NCI4 1184 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 DDTLA6NHG4 134 aaPredicted RBP8.49□□□□□ -1.05
VPS39-204ENST00000561818 SPDYE3A6NKU9 549 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 USP17L5A8MUK1 530 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 FZD9O00144 591 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 WDR46O15213 610 aaKnown RBP8.49□□□□□ -1.05
VPS39-204ENST00000561818 GTPBP6O43824 516 aaPredicted RBP8.49□□□□□ -1.05
VPS39-204ENST00000561818 ZNF500O60304 480 aaPredicted RBP8.49□□□□□ -1.05
VPS39-204ENST00000561818 CCNT1O60563 726 aaKnown RBP8.49□□□□□ -1.05
VPS39-204ENST00000561818 CTNND1O60716 968 aaKnown RBP8.49□□□□□ -1.05
VPS39-204ENST00000561818 PPFIA3O75145 1194 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 RAD17O75943 681 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 FGFR1OPO95684 399 aaKnown RBP8.49□□□□□ -1.05
VPS39-204ENST00000561818 TPM2P07951 284 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 KCNJ6P48051 423 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 SARSP49591 514 aaKnown RBP8.49□□□□□ -1.05
VPS39-204ENST00000561818 SETQ01105 290 aaPredicted RBP8.49□□□□□ -1.05
VPS39-204ENST00000561818 ATP2B2Q01814 1243 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 TCP10Q12799 353 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 IQCB1Q15051 598 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 CALCRLQ16602 461 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 RRAGBQ5VZM2 374 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 KRT79Q5XKE5 535 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 FBXO11Q86XK2 927 aa8.49□□□□□ -1.05
VPS39-204ENST00000561818 PLA2G4DQ86XP0 818 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms