RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 KRT23Q9C075 422 aa18.41■□□□□ 0.54
VPS39-203ENST00000561797 ZSWIM5Q9P217 1185 aa18.41■□□□□ 0.54
VPS39-203ENST00000561797 DNAJC25-GNG10A0A024R161 153 aa18.4■□□□□ 0.54
VPS39-203ENST00000561797 CCDC178Q5BJE1 867 aa18.4■□□□□ 0.54
VPS39-203ENST00000561797 SYDE2Q5VT97 1194 aa18.4■□□□□ 0.54
VPS39-203ENST00000561797 DGKHQ86XP1 1220 aa18.4■□□□□ 0.54
VPS39-203ENST00000561797 TRERF1Q96PN7 1200 aa18.4■□□□□ 0.54
VPS39-203ENST00000561797 ZSCAN10Q96SZ4 725 aaPredicted RBP18.4■□□□□ 0.54
VPS39-203ENST00000561797 ACAD9Q9H845 621 aa18.4■□□□□ 0.54
VPS39-203ENST00000561797 CNNM2Q9H8M5 875 aa18.4■□□□□ 0.54
VPS39-203ENST00000561797 RNF146Q9NTX7 359 aa18.4■□□□□ 0.54
VPS39-203ENST00000561797 NR2E3Q9Y5X4 410 aa18.4■□□□□ 0.54
VPS39-203ENST00000561797 SGSM2O43147 1006 aa18.39■□□□□ 0.53
VPS39-203ENST00000561797 SEPT4O43236 478 aa18.39■□□□□ 0.53
VPS39-203ENST00000561797 MYCNP04198 464 aaPredicted RBP18.39■□□□□ 0.53
VPS39-203ENST00000561797 TAL1P17542 331 aaPredicted RBP18.39■□□□□ 0.53
VPS39-203ENST00000561797 ZNF543Q08ER8 600 aa18.39■□□□□ 0.53
VPS39-203ENST00000561797 BTNL9Q6UXG8 535 aa18.39■□□□□ 0.53
VPS39-203ENST00000561797 KAT14Q9H8E8 782 aa18.39■□□□□ 0.53
VPS39-203ENST00000561797 CCPG1Q9ULG6 757 aa18.39■□□□□ 0.53
VPS39-203ENST00000561797 PFASO15067 1338 aa18.39■□□□□ 0.53
VPS39-203ENST00000561797 CYP21A2P08686 494 aa18.38■□□□□ 0.53
VPS39-203ENST00000561797 GOLGA8HP0CJ92 632 aa18.38■□□□□ 0.53
VPS39-203ENST00000561797 NT5C2P49902 561 aa18.38■□□□□ 0.53
VPS39-203ENST00000561797 TKFCQ3LXA3 575 aa18.38■□□□□ 0.53
VPS39-203ENST00000561797 MUM1L1Q5H9M0 696 aa18.38■□□□□ 0.53
VPS39-203ENST00000561797 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.38■□□□□ 0.53
VPS39-203ENST00000561797 C7orf61Q8IZ16 206 aa18.38■□□□□ 0.53
VPS39-203ENST00000561797 ENAHQ8N8S7 591 aaPredicted RBP18.38■□□□□ 0.53
VPS39-203ENST00000561797 PNMA1Q8ND90 353 aa18.38■□□□□ 0.53
VPS39-203ENST00000561797 UBAC1Q9BSL1 405 aa18.38■□□□□ 0.53
VPS39-203ENST00000561797 RANBP17Q9H2T7 1088 aaKnown RBP18.38■□□□□ 0.53
VPS39-203ENST00000561797 U3KPZ7 1027 aaPredicted RBP18.38■□□□□ 0.53
VPS39-203ENST00000561797 TNKSO95271 1327 aa18.38■□□□□ 0.53
VPS39-203ENST00000561797 CEP290O15078 2479 aa18.37■□□□□ 0.53
VPS39-203ENST00000561797 COL6A1P12109 1028 aa18.37■□□□□ 0.53
VPS39-203ENST00000561797 GJC2Q5T442 439 aaPredicted RBP18.37■□□□□ 0.53
VPS39-203ENST00000561797 CYB5R4Q7L1T6 521 aa18.37■□□□□ 0.53
VPS39-203ENST00000561797 A1CFQ9NQ94 594 aaKnown RBP18.37■□□□□ 0.53
VPS39-203ENST00000561797 CNPY2Q9Y2B0 182 aa18.37■□□□□ 0.53
VPS39-203ENST00000561797 POTEB2H3BUK9 544 aa18.36■□□□□ 0.53
VPS39-203ENST00000561797 SNAI1O95863 264 aaPredicted RBP18.36■□□□□ 0.53
VPS39-203ENST00000561797 ICAM1P05362 532 aa18.36■□□□□ 0.53
VPS39-203ENST00000561797 ZNF865P0CJ78 1059 aaPredicted RBP18.36■□□□□ 0.53
VPS39-203ENST00000561797 SNHG28P0DPA3 235 aa18.36■□□□□ 0.53
VPS39-203ENST00000561797 CNTN2Q02246 1040 aa18.36■□□□□ 0.53
VPS39-203ENST00000561797 TRDNQ13061 729 aa18.36■□□□□ 0.53
VPS39-203ENST00000561797 MSL3Q8N5Y2 521 aaKnown RBP18.36■□□□□ 0.53
VPS39-203ENST00000561797 ARRDC4Q8NCT1 418 aa18.36■□□□□ 0.53
VPS39-203ENST00000561797 ANKS1AQ92625 1134 aa18.36■□□□□ 0.53
VPS39-203ENST00000561797 FGD4Q96M96 766 aa18.36■□□□□ 0.53
VPS39-203ENST00000561797 SENP6Q9GZR1 1112 aaPredicted RBP18.36■□□□□ 0.53
VPS39-203ENST00000561797 UBA5Q9GZZ9 404 aa18.36■□□□□ 0.53
VPS39-203ENST00000561797 CPVLQ9H3G5 476 aa18.36■□□□□ 0.53
VPS39-203ENST00000561797 NRBP1Q9UHY1 535 aa18.36■□□□□ 0.53
VPS39-203ENST00000561797 SYNGAP1Q96PV0 1343 aa18.35■□□□□ 0.53
VPS39-203ENST00000561797 MAMDC4Q6UXC1 1216 aa18.35■□□□□ 0.53
VPS39-203ENST00000561797 NSMFQ6X4W1 530 aa18.35■□□□□ 0.53
VPS39-203ENST00000561797 ZNF467Q7Z7K2 595 aaPredicted RBP18.35■□□□□ 0.53
VPS39-203ENST00000561797 CCDC136Q96JN2 1154 aa18.35■□□□□ 0.53
VPS39-203ENST00000561797 ZHX1Q9UKY1 873 aaPredicted RBP18.35■□□□□ 0.53
VPS39-203ENST00000561797 COLQQ9Y215 455 aaPredicted RBP18.35■□□□□ 0.53
VPS39-203ENST00000561797 TAF6LQ9Y6J9 622 aa18.35■□□□□ 0.53
VPS39-203ENST00000561797 LRRC37A2A6NM11 1700 aa18.35■□□□□ 0.53
VPS39-203ENST00000561797 KBTBD13C9JR72 458 aa18.34■□□□□ 0.53
VPS39-203ENST00000561797 DNM1LO00429 736 aa18.34■□□□□ 0.53
VPS39-203ENST00000561797 RARBP10826 455 aa18.34■□□□□ 0.53
VPS39-203ENST00000561797 AKR1A1P14550 325 aa18.34■□□□□ 0.53
VPS39-203ENST00000561797 LRRC26Q2I0M4 334 aa18.34■□□□□ 0.53
VPS39-203ENST00000561797 GPATCH4Q5T3I0 446 aaKnown RBP18.34■□□□□ 0.53
VPS39-203ENST00000561797 IFIT1BQ5T764 474 aaKnown RBP18.34■□□□□ 0.53
VPS39-203ENST00000561797 CHRDL2Q6WN34 429 aa18.34■□□□□ 0.53
VPS39-203ENST00000561797 KIAA1211Q6ZU35 1233 aa18.34■□□□□ 0.53
VPS39-203ENST00000561797 FAM133AQ8N9E0 248 aa18.34■□□□□ 0.53
VPS39-203ENST00000561797 MAP4K1Q92918 833 aa18.34■□□□□ 0.53
VPS39-203ENST00000561797 XPNPEP3Q9NQH7 507 aa18.34■□□□□ 0.53
VPS39-203ENST00000561797 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.34■□□□□ 0.53
VPS39-203ENST00000561797 RBM8AQ9Y5S9 174 aaKnown RBP18.34■□□□□ 0.53
VPS39-203ENST00000561797 SOWAHBA6NEL2 793 aa18.33■□□□□ 0.52
VPS39-203ENST00000561797 E7EWF7 191 aa18.33■□□□□ 0.52
VPS39-203ENST00000561797 ATN1P54259 1190 aaPredicted RBP18.33■□□□□ 0.52
VPS39-203ENST00000561797 LRRC41Q15345 812 aa18.33■□□□□ 0.52
VPS39-203ENST00000561797 SEC23AQ15436 765 aa18.33■□□□□ 0.52
VPS39-203ENST00000561797 HABP4Q5JVS0 413 aaKnown RBP18.33■□□□□ 0.52
VPS39-203ENST00000561797 ARMCX2Q7L311 632 aa18.33■□□□□ 0.52
VPS39-203ENST00000561797 CCDC144CPQ8IYA2 1237 aa18.33■□□□□ 0.52
VPS39-203ENST00000561797 NCOA7Q8NI08 942 aa18.33■□□□□ 0.52
VPS39-203ENST00000561797 LENG1Q96BZ8 264 aaPredicted RBP18.33■□□□□ 0.52
VPS39-203ENST00000561797 ESYT1Q9BSJ8 1104 aa18.33■□□□□ 0.52
VPS39-203ENST00000561797 CYP39A1Q9NYL5 469 aa18.33■□□□□ 0.52
VPS39-203ENST00000561797 ZMYND8Q9ULU4 1186 aaPredicted RBP18.33■□□□□ 0.52
VPS39-203ENST00000561797 PGK1P00558 417 aa18.32■□□□□ 0.52
VPS39-203ENST00000561797 PARP1P09874 1014 aaKnown RBP18.32■□□□□ 0.52
VPS39-203ENST00000561797 SYN1P17600 705 aa18.32■□□□□ 0.52
VPS39-203ENST00000561797 ACVR2BQ13705 512 aa18.32■□□□□ 0.52
VPS39-203ENST00000561797 BMP2KLQ5H9B9 411 aa18.32■□□□□ 0.52
VPS39-203ENST00000561797 STOX1Q6ZVD7 989 aa18.32■□□□□ 0.52
VPS39-203ENST00000561797 CHST3Q7LGC8 479 aa18.32■□□□□ 0.52
VPS39-203ENST00000561797 RALYLQ86SE5 291 aaKnown RBP18.32■□□□□ 0.52
VPS39-203ENST00000561797 FAM184BQ9ULE4 1060 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms